| Name: COL13A1 | Sequence: fasta or formatted (703aa) | NCBI GI: 22027583 | |
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Description: alpha 1 type XIII collagen isoform 7
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Referenced in:
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Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19 | |||
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 7.1 50 3 C cysteine 1.1 8 1 D aspartate 3.3 23 1 E glutamate 6.1 43 1 F phenylalanine 0.9 6 1 G glycine 25.5 179 3 H histidine 1.6 11 1 I isoleucine 2.7 19 2 K lysine 6.5 46 2 L leucine 7.4 52 2 M methionine 1.8 13 1 N asparagine 1.6 11 1 P proline 16.5 116 3 Q glutamine 4.1 29 2 R arginine 5.0 35 4 S serine 3.4 24 2 T threonine 2.4 17 1 V valine 2.3 16 1 W tryptophan 0.3 2 1 Y tyrosine 0.4 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 7 COL13A1 0.993 alpha 1 type XIII collagen isoform 1 COL13A1 0.988 alpha 1 type XIII collagen isoform 20 COL13A1 0.981 alpha 1 type XIII collagen isoform 6 COL13A1 0.976 alpha 1 type XIII collagen isoform 12 COL13A1 0.971 alpha 1 type XIII collagen isoform 2 COL13A1 0.970 alpha 1 type XIII collagen isoform 8 COL13A1 0.962 alpha 1 type XIII collagen isoform 4 COL13A1 0.962 alpha 1 type XIII collagen isoform 3 COL13A1 0.957 alpha 1 type XIII collagen isoform 13 COL13A1 0.956 alpha 1 type XIII collagen isoform 5 COL13A1 0.942 alpha 1 type XIII collagen isoform 9 COL13A1 0.938 alpha 1 type XIII collagen isoform 11 COL13A1 0.928 alpha 1 type XIII collagen isoform 10 COL13A1 0.920 alpha 1 type XIII collagen isoform 15 COL13A1 0.905 alpha 1 type XIII collagen isoform 14 COL13A1 0.894 alpha 1 type XIII collagen isoform 16 COL13A1 0.888 alpha 1 type XIII collagen isoform 17 COL13A1 0.886 alpha 1 type XIII collagen isoform 18 COL13A1 0.815 alpha 1 type XIII collagen isoform 19 COL4A5 0.295 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.293 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.292 type IV collagen alpha 5 isoform 3 precursor COL5A1 0.292 alpha 1 type V collagen preproprotein COL5A2 0.286 alpha 2 type V collagen preproprotein COL11A1 0.283 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.283 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.283 alpha 1 type XI collagen isoform A preproprotein [Ho... COL4A1 0.283 alpha 1 type IV collagen preproprotein COL25A1 0.281 collagen, type XXV, alpha 1 isoform 1Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
