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Search of human proteins with 25777671
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
(940 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 1999 0.0
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 129 1e-29
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 119 2e-26
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 119 2e-26
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 118 2e-26
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 118 2e-26
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 118 2e-26
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 117 5e-26
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 116 9e-26
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 115 2e-25
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 115 2e-25
gi|48762934 alpha 2 type I collagen [Homo sapiens] 114 3e-25
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 112 2e-24
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 111 4e-24
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 108 2e-23
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 108 2e-23
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 108 3e-23
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 108 3e-23
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 108 3e-23
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 106 1e-22
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 106 1e-22
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 105 2e-22
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 105 3e-22
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 105 3e-22
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 105 3e-22
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 105 3e-22
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 104 3e-22
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 104 3e-22
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 104 4e-22
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 103 6e-22
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 1999 bits (5179), Expect = 0.0
Identities = 940/940 (100%), Positives = 940/940 (100%)
Query: 1 MGSGPIDPKELLKGLDSFLNRDGEVKSVDGISKIFSLMKEARKMVSRCTYLNILLQTRSP 60
MGSGPIDPKELLKGLDSFLNRDGEVKSVDGISKIFSLMKEARKMVSRCTYLNILLQTRSP
Sbjct: 1 MGSGPIDPKELLKGLDSFLNRDGEVKSVDGISKIFSLMKEARKMVSRCTYLNILLQTRSP 60
Query: 61 EILVKFIDVGGYKLLNNWLTYSKTTNNIPLLQQILLTLQHLPLTVDHLKQNNTAKLVKQL 120
EILVKFIDVGGYKLLNNWLTYSKTTNNIPLLQQILLTLQHLPLTVDHLKQNNTAKLVKQL
Sbjct: 61 EILVKFIDVGGYKLLNNWLTYSKTTNNIPLLQQILLTLQHLPLTVDHLKQNNTAKLVKQL 120
Query: 121 SKSSEDEELRKLASVLVSDWMAVIRSQSSTQPAEKDKKKRKDEGKSRTTLPERPLTEVKA 180
SKSSEDEELRKLASVLVSDWMAVIRSQSSTQPAEKDKKKRKDEGKSRTTLPERPLTEVKA
Sbjct: 121 SKSSEDEELRKLASVLVSDWMAVIRSQSSTQPAEKDKKKRKDEGKSRTTLPERPLTEVKA 180
Query: 181 ETRAEEAPEKKREKPKSLRTTAPSHAKFRSTGLELETPSLVPVKKNASTVVVSDKYNLKP 240
ETRAEEAPEKKREKPKSLRTTAPSHAKFRSTGLELETPSLVPVKKNASTVVVSDKYNLKP
Sbjct: 181 ETRAEEAPEKKREKPKSLRTTAPSHAKFRSTGLELETPSLVPVKKNASTVVVSDKYNLKP 240
Query: 241 IPLKRQSNVAAPGDATPPAEKKYKPLNTTPNATKEIKVKIIPPQPMEGLGFLDALNSAPV 300
IPLKRQSNVAAPGDATPPAEKKYKPLNTTPNATKEIKVKIIPPQPMEGLGFLDALNSAPV
Sbjct: 241 IPLKRQSNVAAPGDATPPAEKKYKPLNTTPNATKEIKVKIIPPQPMEGLGFLDALNSAPV 300
Query: 301 PGIKIKKKKKVLSPTAAKPSPFEGKTSTEPSTAKPSSPEPAPPSEAMDADRPGTPVPPVE 360
PGIKIKKKKKVLSPTAAKPSPFEGKTSTEPSTAKPSSPEPAPPSEAMDADRPGTPVPPVE
Sbjct: 301 PGIKIKKKKKVLSPTAAKPSPFEGKTSTEPSTAKPSSPEPAPPSEAMDADRPGTPVPPVE 360
Query: 361 VPELMDTASLEPGALDAKPVESPGDPNQLTRKGRKRKSVTWPEEGKLREYFYFELDETER 420
VPELMDTASLEPGALDAKPVESPGDPNQLTRKGRKRKSVTWPEEGKLREYFYFELDETER
Sbjct: 361 VPELMDTASLEPGALDAKPVESPGDPNQLTRKGRKRKSVTWPEEGKLREYFYFELDETER 420
Query: 421 VNVNKIKDFGEAAKREILSDRHAFETARRLSHDNMEEKVPWVCPRPLVLPSPLVTPGSNS 480
VNVNKIKDFGEAAKREILSDRHAFETARRLSHDNMEEKVPWVCPRPLVLPSPLVTPGSNS
Sbjct: 421 VNVNKIKDFGEAAKREILSDRHAFETARRLSHDNMEEKVPWVCPRPLVLPSPLVTPGSNS 480
Query: 481 QERYIQAEREKGILQELFLNKESPHEPDPEPYEPIPPKLIPLDEECSMDETPYVETLEPG 540
QERYIQAEREKGILQELFLNKESPHEPDPEPYEPIPPKLIPLDEECSMDETPYVETLEPG
Sbjct: 481 QERYIQAEREKGILQELFLNKESPHEPDPEPYEPIPPKLIPLDEECSMDETPYVETLEPG 540
Query: 541 GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEEL 600
GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEEL
Sbjct: 541 GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEEL 600
Query: 601 LKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGG 660
LKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGG
Sbjct: 601 LKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGG 660
Query: 661 PVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPP 720
PVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPP
Sbjct: 661 PVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPP 720
Query: 721 PFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSG 780
PFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSG
Sbjct: 721 PFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSG 780
Query: 781 HRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
HRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG
Sbjct: 781 HRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
Query: 841 GSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGH 900
GSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGH
Sbjct: 841 GSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGH 900
Query: 901 SHGGDMSNRPVCRHFMMKGNCRYENNCAFYHPGVNGPPLP 940
SHGGDMSNRPVCRHFMMKGNCRYENNCAFYHPGVNGPPLP
Sbjct: 901 SHGGDMSNRPVCRHFMMKGNCRYENNCAFYHPGVNGPPLP 940
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 129 bits (325), Expect = 1e-29
Identities = 143/415 (34%), Positives = 163/415 (39%), Gaps = 72/415 (17%)
Query: 539 PGGSG-----GSPDGAG--GSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGS 591
PGG G GSP G G G PP GS G P PG G Q +MG
Sbjct: 530 PGGPGMRGMPGSPGGPGSDGKPGPP------GSQGESGRPGPPGPSGPRGQP---GVMGF 580
Query: 592 PNSHPSEELLKQ-----------PDYSDKIKQMLVPHGLLGPGPIANGFPPG--GPGGPK 638
P ++ + P P G PGP G G GP GP+
Sbjct: 581 PGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQG--PPGPTGPGGDKGDTGPPGPQ 638
Query: 639 GMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRG-GDPFWDGPGDP--MRGGP-MRG 694
G+Q P G GGP PG +G PG P G P P G GD G P + G P +RG
Sbjct: 639 GLQGLP-GTGGP-PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRG 696
Query: 695 GPGPGPGPYHRGRGGRGGNEPPPPPPP--------FRGARGGRSGGGPPNGRGGPGG--- 743
G GP PGP GG+G PP PP G RGG GP +G PGG
Sbjct: 697 GAGP-PGP----EGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGA 751
Query: 744 -GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMG----------SGHRPHEGPGGSMG 792
G+ G G R GP G G +G +G GG G G R GP G G
Sbjct: 752 DGVPGKDGPRGPTGPIGPPG-PAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAG 810
Query: 793 GGGGHRPHEGPGG-GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGP 851
G + PGG G G G + GP G G GG P GP G G G GP
Sbjct: 811 FPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP-AGPPGPQGVKGERGSPGGP 869
Query: 852 GHGGPHGHRPHDVPGHRG-HDHRGPP-PHEHRGHDGPGHGGGGHRGHDGGHSHGG 904
G G G R +PG G + + GPP P G DGP G G+ G G G
Sbjct: 870 GAAGFPGAR--GLPGPPGSNGNPGPPGPSGSPGKDGP-PGPAGNTGAPGSPGVSG 921
Score = 123 bits (309), Expect = 7e-28
Identities = 143/463 (30%), Positives = 169/463 (36%), Gaps = 108/463 (23%)
Query: 516 PPKLIPLDEECSM-DETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGP 574
P IP E C++ + P T P G G P G G PP + G G P P
Sbjct: 75 PNPEIPFGECCAVCPQPPTAPTRPPNGQG--PQGPKGDPGPPGIPGRNGDPGIPGQPGSP 132
Query: 575 GGGGINVQEILTSIMGSPNSHPSEELLKQPDY-SDKIKQMLVPHGLLGPGPIANGFPPGG 633
G G G S P+ P Y S +K + GL G +P G
Sbjct: 133 GSPGPP---------GICESCPTGPQNYSPQYDSYDVKSGVAVGGLAG-------YP--G 174
Query: 634 PGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMR 693
P GP G PPGP PG G PG P P GPP G+P GP P G P
Sbjct: 175 PAGPPG----PPGP----PGTSGHPGSPGSPGYQGPP-----GEPGQAGPSGPP-GPPGA 220
Query: 694 GGP-GPGPGPYHRGRGGRGGNEPPPPPPPFRGARG--------------GRSG------- 731
GP GP GR GR G P PP +G G GR+G
Sbjct: 221 IGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGA 280
Query: 732 ---------------GGPPNGRGGPG----GGMVGGGGHRPHEGPGGGMGNSSGHRPHEG 772
GP RG PG G+ G G R ++G G G P G
Sbjct: 281 PGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGP-PG 339
Query: 773 PGGGMGS-GHRPHEGPGGSMGGGG-----------GHRPHEGPGG--GISGGSGHRPHEG 818
G GS G + GP GS G G GH +GP G GI+G G + G
Sbjct: 340 TAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMG 399
Query: 819 PGGGMGAGG--GHRPHEGPGGS------MGGSGGHRPHEGPGHGGPHGHRPH----DVPG 866
P G GA G G R GP G+ GG+G + G GP G R VPG
Sbjct: 400 PAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPG 459
Query: 867 HRGHDHRGPPPHEHRGHDGPG----HGGGGHRGHDGGHSHGGD 905
+G D + P E + PG G G RG G + G+
Sbjct: 460 AKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGE 502
Score = 122 bits (305), Expect = 2e-27
Identities = 142/422 (33%), Positives = 156/422 (36%), Gaps = 98/422 (23%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGP--QGPGGGGINVQEILTSIMGSPNSHP 596
PG G DG GS P L G+ G P +GP G PN P
Sbjct: 458 PGAKG--EDGKDGSPGEPGANGLPGAAGERGAPGFRGPAG---------------PNGIP 500
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLG-PGPIANGFPPGGPGGPKGMQHFPPGPGGP----M 651
E K P P G G PG G PGGP GM+ P PGGP
Sbjct: 501 GE---KGPAGERGAPGPAGPRGAAGEPGR------DGVPGGP-GMRGMPGSPGGPGSDGK 550
Query: 652 PGPHG--------GPGGPVGPRLLGPP-----PPPRGGDPFWDGPGDPMRGGPMRGGPGP 698
PGP G GP GP GPR G P P P+G D G P + G RGGPG
Sbjct: 551 PGPPGSQGESGRPGPPGPSGPR--GQPGVMGFPGPKGND------GAPGKNGE-RGGPG- 600
Query: 699 GPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPN--------GRGGPGG-----GM 745
GPGP +G G+ G P PP G G + GPP G GGP G G
Sbjct: 601 GPGP--QGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGE 658
Query: 746 VGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG- 804
G G G GG G++ PG G R GP G GG G P PG
Sbjct: 659 PGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGA 718
Query: 805 -------------GGISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHE 849
GG+ G G + +G GG GA G G GP G +G G
Sbjct: 719 AGTPGLQGMPGERGGL-GSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPG 777
Query: 850 GPGHGGPHG----HRPHDVPGHRGHDHRGPP-PHEHRGHDGPG--HGGGGHRGHDGGHSH 902
G GG G P PG RG GPP P G G GG G RG G
Sbjct: 778 DKGEGGAPGLPGIAGPRGSPGERG--ETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGE 835
Query: 903 GG 904
GG
Sbjct: 836 GG 837
Score = 120 bits (302), Expect = 5e-27
Identities = 138/405 (34%), Positives = 148/405 (36%), Gaps = 83/405 (20%)
Query: 538 EPGGSG--GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSH 595
EPGG G G+P G G PP +A G G GP GP G + G S
Sbjct: 820 EPGGKGERGAP-GEKGEGGPPGVAGPPGGSGPA-GPPGPQG-----------VKGERGSP 866
Query: 596 PSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPH 655
P GL GP P +NG P GP GP G PG GP PGP
Sbjct: 867 GGPGAAGFPG----------ARGLPGP-PGSNGNP--GPPGPSGS----PGKDGP-PGPA 908
Query: 656 GGPGGPVGPRLLGPP----PPPRGGDPFWDGP-GDP-------------MRGGPMRGGPG 697
G G P P + GP P G P GP G P + G P GP
Sbjct: 909 GNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPR 968
Query: 698 PGPGPY-------HRGRGGRGGNEPPPPP---PPFRGARGGRSGGGPPNGRGGPG-GGMV 746
PGP G G G PP P P G G G P G PG G
Sbjct: 969 GSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSP 1028
Query: 747 GGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMG-SGHRPHEGPGGSMG--GGGGHRPHEGP 803
GG G R G G G + GH GP G G SG R GP G G G G R GP
Sbjct: 1029 GGKGDRGENGSPGAPG-APGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP 1087
Query: 804 GG--------GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGG 855
G G G +G + H G G GA G GP G G G P G G
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS----PGPAGQQGAIGSPGPAGPRGPVG 1143
Query: 856 PHGHRPHDVPGHRGHDHR-GPP-PHEHRGHDGPGHGGGGHRGHDG 898
P G P G GH GPP P +RG G G GH G G
Sbjct: 1144 PSG--PPGKDGTSGHPGPIGPPGPRGNRGERG-SEGSPGHPGQPG 1185
Score = 115 bits (288), Expect = 2e-25
Identities = 135/397 (34%), Positives = 158/397 (39%), Gaps = 87/397 (21%)
Query: 539 PGGSGGS----PDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNS 594
PG GG+ P+G G+ PP G+ G +G G GG +GSP
Sbjct: 692 PGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGL-QGMPGERGG-----------LGSPG- 738
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGP--GPIANGFP----PGGPGGPKGMQHFPPGPG 648
P G G GP A+G P P GP GP G PPGP
Sbjct: 739 ---------------------PKGDKGEPGGPGADGVPGKDGPRGPTGPIG----PPGPA 773
Query: 649 GPMPGPHGGPGGPVGPRLLGP--PPPPRG--GDPFWDG-PGDPMRGGPMRGGPGPGPGPY 703
G PG G G P P + GP P RG G P G PG P + G GG G P
Sbjct: 774 G-QPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGE-PGGKGERGAPG 831
Query: 704 HRGRGG-------RGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPHE 755
+G GG GG+ P PP P +G +G R G P G PG G+ G G +
Sbjct: 832 EKGEGGPPGVAGPPGGSGPAGPPGP-QGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNP 890
Query: 756 GPGGGMGNSSGHRPHEGPGGGMG-------SGHRPHEGPGGSMGGGGGHRPHEGPGG-GI 807
GP G G S G GP G G SG + G G G G P PG GI
Sbjct: 891 GPPGPSG-SPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGI 949
Query: 808 SGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGH 867
+G +G R GP G G G GP G G SG + G GP G P +PG
Sbjct: 950 AGITGARGLAGPPGMPGPRGS----PGPQGVKGESGKPGANGLSGERGPPG--PQGLPGL 1003
Query: 868 RGHDHRGPPPHE-HRGHDG-PGH----GGGGHRGHDG 898
G G P + + G DG PG GG G RG +G
Sbjct: 1004 AG--TAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENG 1038
Score = 109 bits (273), Expect = 1e-23
Identities = 122/363 (33%), Positives = 139/363 (38%), Gaps = 51/363 (14%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
PG +G P G G PP L G G G GP PG G + G+P + +
Sbjct: 620 PGPTG--PGGDKGDTGPPGPQGLQGLPGTG-GP--PGENGKPGEPGPKGDAGAPGAPGGK 674
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP-------- 650
P P GL G + G P GP G KG PPGP G
Sbjct: 675 GDAGAPGERG-------PPGLAGAPGLRGGAGPPGPEGGKGAAG-PPGPPGAAGTPGLQG 726
Query: 651 MPGPHGGPGGPVGPR--LLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRG 708
MPG GG G P GP+ P P G P DGP P GP+ G PGP P +G G
Sbjct: 727 MPGERGGLGSP-GPKGDKGEPGGPGADGVPGKDGPRGPT--GPI-GPPGPAGQPGDKGEG 782
Query: 709 GRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG----GMVGGGGHRPHEGPGGGMGNS 764
G G P RG+ G R GPP G PG G GG G R G G G
Sbjct: 783 GAPGLPGIAGP---RGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP 839
Query: 765 SGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG-GISGGSGHRPHEGPGGGM 823
P PGG +G +G G G GG PG G+ G G + GP G
Sbjct: 840 GVAGP---PGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPS 896
Query: 824 GAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGH 883
G+ G P GP G+ G G PG GP G PG +G PP G
Sbjct: 897 GSPGKDGP-PGPAGNTGAPGS------PGVSGPKGDAGQ--PGEKGSPGAQGPP----GA 943
Query: 884 DGP 886
GP
Sbjct: 944 PGP 946
Score = 103 bits (256), Expect = 1e-21
Identities = 104/307 (33%), Positives = 119/307 (38%), Gaps = 45/307 (14%)
Query: 633 GPGGPKGMQHFPPGPGGPMP-GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDP-MRGG 690
GP GP G FP PG GP G PG P G P P +G PG P + G
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP-QGHAGAQGPPGPPGINGS 391
Query: 691 PM-RGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG-----GPGG- 743
P +G GP P G G G PP P GA G R G G P G GP G
Sbjct: 392 PGGKGEMGPAGIP---GAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE 448
Query: 744 ----GMVGGGGHRPHEGPGG--------GMGNSSGHRPHEGPGGGMGSGHRPHE-GPGGS 790
G+ G G + +G G G+ ++G R G G G P E GP G
Sbjct: 449 RGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGE 508
Query: 791 MGGGGGHRPHEGPG----GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHR 846
G G P G G+ GG G R G GG G+ G GP GS G SG
Sbjct: 509 RGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDG----KPGPPGSQGESGRPG 564
Query: 847 PHEGPGHGGPHGH-RPHDVPGHRGHDHRGPPPHEHRGHDGPG-------HGGGGHRGHDG 898
P PG GP G PG +G+D E G GPG +G G +G G
Sbjct: 565 P---PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPG 621
Query: 899 GHSHGGD 905
GGD
Sbjct: 622 PTGPGGD 628
Score = 82.4 bits (202), Expect = 2e-15
Identities = 100/301 (33%), Positives = 113/301 (37%), Gaps = 46/301 (15%)
Query: 541 GSGGSPDGAG--GSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
G GSP G G+ P +A + G+ G P PG G + + G P ++
Sbjct: 930 GEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLS 989
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGP--KGMQHFPPGPGGPMP-GPH 655
P P GL PG PG G P G+ PGG G +
Sbjct: 990 GERGPPG----------PQGL--PGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGEN 1037
Query: 656 GGPGGPVGPRLLGPPPP--PRG--GDPFWDGPGDPMRG-GPM--RGGPGP-GPGPYHRGR 707
G PG P P GPP P P G GD GP P GP RG PGP GP
Sbjct: 1038 GSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGET 1097
Query: 708 GGRG-----------GNEPPPPPPPFRGARGGRSGGGPPNGRG--GPGG--GMVGGGGHR 752
G RG GN P P G +G GP RG GP G G G GH
Sbjct: 1098 GERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHP 1157
Query: 753 PHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG---GGGGHRPHEGPGGGISG 809
GP G GN G R EG G G P GP G+ G GG G G GG +G
Sbjct: 1158 GPIGPPGPRGN-RGERGSEGSPGHPGQPGPP--GPPGAPGPCCGGVGAAAIAGIGGEKAG 1214
Query: 810 G 810
G
Sbjct: 1215 G 1215
Score = 68.9 bits (167), Expect = 2e-11
Identities = 90/269 (33%), Positives = 96/269 (35%), Gaps = 49/269 (18%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSP--NSHP 596
P GS G P G G P L G G GPQG G L G P + +P
Sbjct: 967 PRGSPG-PQGVKGESGKPGANGLSGERGP-PGPQGLPG--------LAGTAGEPGRDGNP 1016
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFP-PGGPGGPKGMQ--HFPPGPGGPM-- 651
+ L D S K +G G P A G P P GP GP G GP GP
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPG-APGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGA 1075
Query: 652 PGPHGGPG--GPVGPRLLGPPPPPRG--------------GDPFWDGP-------GDPMR 688
PGP G G GP GPR RG G P GP G P
Sbjct: 1076 PGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGP 1135
Query: 689 GGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-----G 743
GP RG GP P G G G PP P RG RG G P G PG G
Sbjct: 1136 AGP-RGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPG 1194
Query: 744 GMVGGGGHRPHEGPGGGMGNSSGHRPHEG 772
GG G G GG + G P+ G
Sbjct: 1195 PCCGGVGAAAIAGIGG--EKAGGFAPYYG 1221
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 119 bits (297), Expect = 2e-26
Identities = 141/429 (32%), Positives = 159/429 (37%), Gaps = 74/429 (17%)
Query: 539 PGGSG-GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGS------ 591
PG G P GA G + P LA G GA P PG G+ LT G
Sbjct: 518 PGQDGLAGPKGAPGERGPSGLA---GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 574
Query: 592 --PNSHPSEELLKQPDYSDKIKQMLVPHGLLG-PGPI-ANGFP--------PGGPG---- 635
P+ P E+ P + G++G PGP ANG P PG PG
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARGQ---PGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGL 631
Query: 636 ----GPKGMQHFPPGPGGPMP--GPHGGPGGPVGPRLLGPPPPP-RGGDPFWDG-PGDPM 687
G G PPGP GP G G PG L GPP PP GG P G PG+
Sbjct: 632 PGKDGETGAAG-PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA- 689
Query: 688 RGGPMRGGPGPGPG-PYHRGRGGRGGNEPP---PPPPPFRGARGGRSGGGPPNGRGGPG- 742
G P GP G P RG G G + P P P G +G GPP +G PG
Sbjct: 690 -GAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGL 748
Query: 743 GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG--GHRPH 800
GM G G GP G G+ P PG G G GP G G G G
Sbjct: 749 QGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP 808
Query: 801 EGPGG--GISGGSGHRPHEGPGGGMGAGG--------GHRPHEGPGGSMGGSGGHRPHEG 850
GP G G G G R GP G G G G + +G G G +G P
Sbjct: 809 PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGP 868
Query: 851 PGHGGPHGHRPHDVPGHRG-HDHRGPP-------------PHEHRGHDGPGHGGGGHRGH 896
G GP G P V G +G +GPP P G+ GP G G G
Sbjct: 869 SGAPGPQG--PTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP-PGPPGPSGK 925
Query: 897 DGGHSHGGD 905
DG GD
Sbjct: 926 DGPKGARGD 934
Score = 109 bits (273), Expect = 1e-23
Identities = 138/458 (30%), Positives = 168/458 (36%), Gaps = 87/458 (18%)
Query: 508 DPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGA 567
D + ++P P ++ D + + E ++ S P G P LA G
Sbjct: 43 DKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPTDLATASGQ--- 99
Query: 568 GKGPQGPGGGGINVQEILTSIMGSPNSH-PSEELLKQPDYSDKIKQMLVPHGLLGPGPIA 626
GP+G G ++++I+ G P P+ E + D DK ++ PGP
Sbjct: 100 -PGPKGQKGEPGDIKDIVGP-KGPPGPQGPAGEQGPRGDRGDKGEKG-------APGPRG 150
Query: 627 NGFPPGGPGGPKGMQHFPPGPGGPMPGPHG--------------------------GPGG 660
PG PG P PPGP GP PGP G GP G
Sbjct: 151 RDGEPGTPGNPG-----PPGPPGP-PGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMG 204
Query: 661 PVGPRLLGPPPP-----PRGGDPFWDGPGDPMRGGPM--RGGPGPGPGPY---HRGRGGR 710
P+GPR GPP P P+G PG+P GPM RG PGP P G+ G+
Sbjct: 205 PMGPR--GPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 262
Query: 711 GGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG----------GGMVGGGGHRPHEGPGGG 760
G PP P RG G G RG PG G+ G G G G
Sbjct: 263 AGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGP 322
Query: 761 MG--NSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEG 818
MG G R GP G G+ R ++G G G G P GP G G G + G
Sbjct: 323 MGPRGLPGERGRTGPAGAAGA--RGNDGQPGPAGPPGPVGPAGGP--GFPGAPGAKGEAG 378
Query: 819 PGGGMGAGGGHRPHEGPG-----GSMGGSGGHRPHEGPGHGGPHGHRP-HDVPGHRGHDH 872
P G G G P PG G G SG PG G G PG G
Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG--P 436
Query: 873 RGPP-PHEHRGHDGP-GHGG----GGHRGHDGGHSHGG 904
RGPP P G GP G G G +G G G
Sbjct: 437 RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474
Score = 108 bits (270), Expect = 2e-23
Identities = 121/387 (31%), Positives = 139/387 (35%), Gaps = 78/387 (20%)
Query: 539 PGGSGGSP--DGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G P DG G+K A G GA GPQGP G + T + G +
Sbjct: 832 PAGFAGPPGADGQPGAKGEQGEAGQKGDAGA-PGPQGPSGAP--GPQGPTGVTGPKGARG 888
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLG-PGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPH 655
++ P G G PG PPG G P PPGP GP
Sbjct: 889 AQG----------------PPGATGFPGAAGRVGPPGSNGNPG-----PPGPPGP----- 922
Query: 656 GGPGGPVGPRLLGPPPPPRGGDPFWDGP-------GDPMRGGPMRGGPGPGPG------- 701
G GP G R PP R G+P GP G+P GP PGP
Sbjct: 923 SGKDGPKGARG-DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 981
Query: 702 ----PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGP 757
P RG G G P P +GA G GPP G P G+ G G EG
Sbjct: 982 IVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPP--GLTGPAGEPGREGS 1039
Query: 758 GGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPH 816
G G PG +G + G G++G G P PG G +G G R
Sbjct: 1040 PGADG---------PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGE 1090
Query: 817 EGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG----HDH 872
G G MG GP G+ G G P G G G R + GHRG
Sbjct: 1091 AGAQGPMGP-------SGPAGARGIQGPQGPRGDKGEAGEPGER--GLKGHRGFTGLQGL 1141
Query: 873 RGPP-PHEHRGHDGPGHGGGGHRGHDG 898
GPP P +G GP G G RG G
Sbjct: 1142 PGPPGPSGDQGASGPA-GPSGPRGPPG 1167
Score = 98.6 bits (244), Expect = 2e-20
Identities = 136/441 (30%), Positives = 154/441 (34%), Gaps = 93/441 (21%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG-------PGGGGINVQEILTSIMGS 591
P G G P GA G+K G GA +GP+G PG G + I G+
Sbjct: 361 PAGGPGFP-GAPGAKGEAGPTGARGPEGA-QGPRGEPGTPGSPGPAGASGNPGTDGIPGA 418
Query: 592 PNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPG-----GPGGPKGMQHFPP 645
S + + P + + P G GP GP PG G GPKG P
Sbjct: 419 KGSAGAPGIAGAPGFPGP-RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKG----EP 473
Query: 646 GPGGPM--PGPHGGPG--------GPVGPRLLGPP----PPPRGGDPFWDGPGDPMRGGP 691
GP GP PGP G G G VGP +GPP P G P DG P +G P
Sbjct: 474 GPAGPQGAPGPAGEEGKRGARGEPGGVGP--IGPPGERGAPGNRGFPGQDGLAGP-KGAP 530
Query: 692 MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRGGPGGGMVGGG 749
GP GP G G+ P P GARG GR G P G+ GP G G
Sbjct: 531 GERGPSGLAGPK-----GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP-GED 584
Query: 750 GHRPHEGPGGGMGNSSGHRPHEGPGGGMGS-------------GHRPHEGPGGSMGGGGG 796
G GP G G G GP G G G R G G G G
Sbjct: 585 GRPGPPGPQGARGQP-GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGP 643
Query: 797 HRPHEGPGG-----GISGGSGHRPHEGPGGGMGAGG--------------------GHRP 831
P GP G G G SG + GP G G GG G R
Sbjct: 644 PGP-AGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERG 702
Query: 832 HEGPGGSMGGSGGHRPHEGPGHGGPHGHR----PHDVPGHRGHDHRGPPPHEH--RGHDG 885
G GS G G P PG G G + P PG +G P E G G
Sbjct: 703 FPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAG 762
Query: 886 P--GHGGGGHRGHDGGHSHGG 904
P G G +G +G G
Sbjct: 763 PKGDRGDVGEKGPEGAPGKDG 783
Score = 95.9 bits (237), Expect = 2e-19
Identities = 128/418 (30%), Positives = 146/418 (34%), Gaps = 86/418 (20%)
Query: 542 SGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEELL 601
+GG + AGG++L V+ MG MG +GP GP G G+P P E +
Sbjct: 184 AGGFDEKAGGAQLG-VMQGPMGPMGP-RGPPGPAGAPGP-----QGFQGNPGE-PGEPGV 235
Query: 602 KQPDYSDKIKQMLVPHGLLGP----GPIANGFPPG-----GPGGPKGMQHFPPGPGGP-- 650
P + P G GP G PG GP GP+G + FP PG P
Sbjct: 236 SGP---------MGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGV 286
Query: 651 --------------------------MPGPHGGPGGPVGPRLLGPPPPPRG--------- 675
PG +G PG P+GPR L P RG
Sbjct: 287 KGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG-PMGPRGL---PGERGRTGPAGAAG 342
Query: 676 -----GDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRS 730
G P GP P+ GP GGPG P +G G G P RG G
Sbjct: 343 ARGNDGQPGPAGPPGPV--GP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 399
Query: 731 GGGPPNGRGGPG-GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGS-GHRPHEGPG 788
GP G PG G+ G G G G G G R GP G G G + G
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPG-FPGPRGPPGPQGATGPLGPKGQTGEP 458
Query: 789 GSMGGGGGHRPHEGPG-GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRP 847
G G G P PG G G G EG G G GG P GP G G G
Sbjct: 459 GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGP-IGPPGERGAPGN--- 514
Query: 848 HEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGG-GGHRGHDGGHSHGG 904
PG G G P PG RG P + PG G G RG G G
Sbjct: 515 RGFPGQDGLAG--PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG 570
Score = 73.2 bits (178), Expect = 1e-12
Identities = 94/275 (34%), Positives = 101/275 (36%), Gaps = 53/275 (19%)
Query: 538 EPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
EPG G GA G + PP GP GP G LT G P S
Sbjct: 1003 EPGKQGAP--GASGDRGPP-------------GPVGPPG--------LTGPAGEPGREGS 1039
Query: 598 EELLKQP--DYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--GPKGMQ--HFPPGPGGPM 651
P D + +K G +G P A G PPG PG GP G Q G GPM
Sbjct: 1040 PGADGPPGRDGAAGVKGDRGETGAVG-APGAPG-PPGSPGPAGPTGKQGDRGEAGAQGPM 1097
Query: 652 PGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRG 711
GP GP G R + P PRG PG+ RG G HRG G
Sbjct: 1098 -----GPSGPAGARGIQGPQGPRGDKGEAGEPGE-------RGLKG------HRGFTGLQ 1139
Query: 712 GNEPPPPPPPFRGARG--GRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRP 769
G PP P +GA G G SG P G GP G G G GP G G S P
Sbjct: 1140 GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP-SGKDGANGIPGPIGPPGPRGRSGETGP 1198
Query: 770 HEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHE-GP 803
PG G GPG M G P E GP
Sbjct: 1199 AGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1233
Score = 47.0 bits (110), Expect = 8e-05
Identities = 57/177 (32%), Positives = 64/177 (36%), Gaps = 52/177 (29%)
Query: 539 PGGSG--GSPDGAG--GSKLPPVLANLMGSMGAG--------KGPQGPGGG--------- 577
PG G GSP AG G + A G MG +GPQGP G
Sbjct: 1067 PGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGE 1126
Query: 578 -GINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-GPI-------ANG 628
G+ T + G P P P G GP GP+ ANG
Sbjct: 1127 RGLKGHRGFTGLQGLPGP-------PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANG 1179
Query: 629 FP-PGGPGGPKGMQHFPPGPGGPM--PGPHGGPGGP-----------VGPRLLGPPP 671
P P GP GP+G GP GP PGP G PG P +GPR GP P
Sbjct: 1180 IPGPIGPPGPRGRSG-ETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1235
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 119 bits (297), Expect = 2e-26
Identities = 141/429 (32%), Positives = 159/429 (37%), Gaps = 74/429 (17%)
Query: 539 PGGSG-GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGS------ 591
PG G P GA G + P LA G GA P PG G+ LT G
Sbjct: 449 PGQDGLAGPKGAPGERGPSGLA---GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 505
Query: 592 --PNSHPSEELLKQPDYSDKIKQMLVPHGLLG-PGPI-ANGFP--------PGGPG---- 635
P+ P E+ P + G++G PGP ANG P PG PG
Sbjct: 506 VGPSGAPGEDGRPGPPGPQGARGQ---PGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGL 562
Query: 636 ----GPKGMQHFPPGPGGPMP--GPHGGPGGPVGPRLLGPPPPP-RGGDPFWDG-PGDPM 687
G G PPGP GP G G PG L GPP PP GG P G PG+
Sbjct: 563 PGKDGETGAAG-PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA- 620
Query: 688 RGGPMRGGPGPGPG-PYHRGRGGRGGNEPP---PPPPPFRGARGGRSGGGPPNGRGGPG- 742
G P GP G P RG G G + P P P G +G GPP +G PG
Sbjct: 621 -GAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGL 679
Query: 743 GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG--GHRPH 800
GM G G GP G G+ P PG G G GP G G G G
Sbjct: 680 QGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP 739
Query: 801 EGPGG--GISGGSGHRPHEGPGGGMGAGG--------GHRPHEGPGGSMGGSGGHRPHEG 850
GP G G G G R GP G G G G + +G G G +G P
Sbjct: 740 PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGP 799
Query: 851 PGHGGPHGHRPHDVPGHRG-HDHRGPP-------------PHEHRGHDGPGHGGGGHRGH 896
G GP G P V G +G +GPP P G+ GP G G G
Sbjct: 800 SGAPGPQG--PTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP-PGPPGPSGK 856
Query: 897 DGGHSHGGD 905
DG GD
Sbjct: 857 DGPKGARGD 865
Score = 108 bits (270), Expect = 2e-23
Identities = 121/387 (31%), Positives = 139/387 (35%), Gaps = 78/387 (20%)
Query: 539 PGGSGGSP--DGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G P DG G+K A G GA GPQGP G + T + G +
Sbjct: 763 PAGFAGPPGADGQPGAKGEQGEAGQKGDAGA-PGPQGPSGAP--GPQGPTGVTGPKGARG 819
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLG-PGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPH 655
++ P G G PG PPG G P PPGP GP
Sbjct: 820 AQG----------------PPGATGFPGAAGRVGPPGSNGNPG-----PPGPPGP----- 853
Query: 656 GGPGGPVGPRLLGPPPPPRGGDPFWDGP-------GDPMRGGPMRGGPGPGPG------- 701
G GP G R PP R G+P GP G+P GP PGP
Sbjct: 854 SGKDGPKGARG-DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 912
Query: 702 ----PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGP 757
P RG G G P P +GA G GPP G P G+ G G EG
Sbjct: 913 IVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPP--GLTGPAGEPGREGS 970
Query: 758 GGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPH 816
G G PG +G + G G++G G P PG G +G G R
Sbjct: 971 PGADG---------PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGE 1021
Query: 817 EGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG----HDH 872
G G MG GP G+ G G P G G G R + GHRG
Sbjct: 1022 AGAQGPMGP-------SGPAGARGIQGPQGPRGDKGEAGEPGER--GLKGHRGFTGLQGL 1072
Query: 873 RGPP-PHEHRGHDGPGHGGGGHRGHDG 898
GPP P +G GP G G RG G
Sbjct: 1073 PGPPGPSGDQGASGPA-GPSGPRGPPG 1098
Score = 108 bits (269), Expect = 3e-23
Identities = 126/396 (31%), Positives = 147/396 (37%), Gaps = 83/396 (20%)
Query: 570 GPQGPGGGGINVQEILTSIMGSPNSH-PSEELLKQPDYSDKIKQMLVPHGLLGPGPIANG 628
GP+G G ++++I+ G P P+ E + D DK ++ PGP
Sbjct: 32 GPKGQKGEPGDIKDIVGP-KGPPGPQGPAGEQGPRGDRGDKGEKG-------APGPRGRD 83
Query: 629 FPPGGPGGPKGMQHFPPGPGGPMPGPHG--------------------------GPGGPV 662
PG PG P PPGP GP PGP G GP GP+
Sbjct: 84 GEPGTPGNPG-----PPGPPGP-PGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPM 137
Query: 663 GPRLLGPPPP-----PRGGDPFWDGPGDPMRGGPM--RGGPGPGPGPY---HRGRGGRGG 712
GPR GPP P P+G PG+P GPM RG PGP P G+ G+ G
Sbjct: 138 GPR--GPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAG 195
Query: 713 NEPPPPPPPFRGARGGRSGGGPPNGRGGPG----------GGMVGGGGHRPHEGPGGGMG 762
PP P RG G G RG PG G+ G G G G MG
Sbjct: 196 ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMG 255
Query: 763 --NSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPG 820
G R GP G G+ R ++G G G G P GP G G G + GP
Sbjct: 256 PRGLPGERGRTGPAGAAGA--RGNDGQPGPAGPPGPVGPAGGP--GFPGAPGAKGEAGPT 311
Query: 821 GGMGAGGGHRPHEGPG-----GSMGGSGGHRPHEGPGHGGPHGHRP-HDVPGHRGHDHRG 874
G G G P PG G G SG PG G G PG G RG
Sbjct: 312 GARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG--PRG 369
Query: 875 PP-PHEHRGHDGP-GHGG----GGHRGHDGGHSHGG 904
PP P G GP G G G +G G G
Sbjct: 370 PPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 405
Score = 98.6 bits (244), Expect = 2e-20
Identities = 136/441 (30%), Positives = 154/441 (34%), Gaps = 93/441 (21%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG-------PGGGGINVQEILTSIMGS 591
P G G P GA G+K G GA +GP+G PG G + I G+
Sbjct: 292 PAGGPGFP-GAPGAKGEAGPTGARGPEGA-QGPRGEPGTPGSPGPAGASGNPGTDGIPGA 349
Query: 592 PNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPG-----GPGGPKGMQHFPP 645
S + + P + + P G GP GP PG G GPKG P
Sbjct: 350 KGSAGAPGIAGAPGFPGP-RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKG----EP 404
Query: 646 GPGGPM--PGPHGGPG--------GPVGPRLLGPP----PPPRGGDPFWDGPGDPMRGGP 691
GP GP PGP G G G VGP +GPP P G P DG P +G P
Sbjct: 405 GPAGPQGAPGPAGEEGKRGARGEPGGVGP--IGPPGERGAPGNRGFPGQDGLAGP-KGAP 461
Query: 692 MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRGGPGGGMVGGG 749
GP GP G G+ P P GARG GR G P G+ GP G G
Sbjct: 462 GERGPSGLAGPK-----GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP-GED 515
Query: 750 GHRPHEGPGGGMGNSSGHRPHEGPGGGMGS-------------GHRPHEGPGGSMGGGGG 796
G GP G G G GP G G G R G G G G
Sbjct: 516 GRPGPPGPQGARGQP-GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGP 574
Query: 797 HRPHEGPGG-----GISGGSGHRPHEGPGGGMGAGG--------------------GHRP 831
P GP G G G SG + GP G G GG G R
Sbjct: 575 PGP-AGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERG 633
Query: 832 HEGPGGSMGGSGGHRPHEGPGHGGPHGHR----PHDVPGHRGHDHRGPPPHEH--RGHDG 885
G GS G G P PG G G + P PG +G P E G G
Sbjct: 634 FPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAG 693
Query: 886 P--GHGGGGHRGHDGGHSHGG 904
P G G +G +G G
Sbjct: 694 PKGDRGDVGEKGPEGAPGKDG 714
Score = 95.9 bits (237), Expect = 2e-19
Identities = 128/418 (30%), Positives = 146/418 (34%), Gaps = 86/418 (20%)
Query: 542 SGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEELL 601
+GG + AGG++L V+ MG MG +GP GP G G+P P E +
Sbjct: 115 AGGFDEKAGGAQLG-VMQGPMGPMGP-RGPPGPAGAPGP-----QGFQGNPGE-PGEPGV 166
Query: 602 KQPDYSDKIKQMLVPHGLLGP----GPIANGFPPG-----GPGGPKGMQHFPPGPGGP-- 650
P + P G GP G PG GP GP+G + FP PG P
Sbjct: 167 SGP---------MGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGV 217
Query: 651 --------------------------MPGPHGGPGGPVGPRLLGPPPPPRG--------- 675
PG +G PG P+GPR L P RG
Sbjct: 218 KGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG-PMGPRGL---PGERGRTGPAGAAG 273
Query: 676 -----GDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRS 730
G P GP P+ GP GGPG P +G G G P RG G
Sbjct: 274 ARGNDGQPGPAGPPGPV--GP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 330
Query: 731 GGGPPNGRGGPG-GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGS-GHRPHEGPG 788
GP G PG G+ G G G G G G R GP G G G + G
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPG-FPGPRGPPGPQGATGPLGPKGQTGEP 389
Query: 789 GSMGGGGGHRPHEGPG-GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRP 847
G G G P PG G G G EG G G GG P GP G G G
Sbjct: 390 GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGP-IGPPGERGAPGN--- 445
Query: 848 HEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGG-GGHRGHDGGHSHGG 904
PG G G P PG RG P + PG G G RG G G
Sbjct: 446 RGFPGQDGLAG--PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG 501
Score = 82.8 bits (203), Expect = 1e-15
Identities = 102/319 (31%), Positives = 113/319 (35%), Gaps = 66/319 (20%)
Query: 622 PGPIANGFPPGGPG---GPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDP 678
PGP PG GPKG PPGP GP GP G G + P PRG D
Sbjct: 31 PGPKGQKGEPGDIKDIVGPKG----PPGPQGP--AGEQGPRGDRGDKGEKGAPGPRGRD- 83
Query: 679 FWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGG---------- 728
PG P G PGP PG PP PP G G
Sbjct: 84 --GEPGTP-------GNPGP-PG--------------PPGPPGPPGLGGNFAAQMAGGFD 119
Query: 729 -RSGG----------GPPNGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPG 774
++GG GP RG PG G G G + + G G G+ G R GP
Sbjct: 120 EKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPP 179
Query: 775 GGMG-SGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHEGPGGGMGAGG--GHR 830
G G G G G G G PG G+ G GHR + G G G G G +
Sbjct: 180 GKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK 239
Query: 831 PHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGG 890
G G G G P PG G G P G RG+D + P P G GP GG
Sbjct: 240 GESGSPGENGSPGPMGPRGLPGERGRTG--PAGAAGARGNDGQ-PGPAGPPGPVGPA-GG 295
Query: 891 GGHRGHDGGHSHGGDMSNR 909
G G G G R
Sbjct: 296 PGFPGAPGAKGEAGPTGAR 314
Score = 73.2 bits (178), Expect = 1e-12
Identities = 94/275 (34%), Positives = 101/275 (36%), Gaps = 53/275 (19%)
Query: 538 EPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
EPG G GA G + PP GP GP G LT G P S
Sbjct: 934 EPGKQGAP--GASGDRGPP-------------GPVGPPG--------LTGPAGEPGREGS 970
Query: 598 EELLKQP--DYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--GPKGMQ--HFPPGPGGPM 651
P D + +K G +G P A G PPG PG GP G Q G GPM
Sbjct: 971 PGADGPPGRDGAAGVKGDRGETGAVG-APGAPG-PPGSPGPAGPTGKQGDRGEAGAQGPM 1028
Query: 652 PGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRG 711
GP GP G R + P PRG PG+ RG G HRG G
Sbjct: 1029 -----GPSGPAGARGIQGPQGPRGDKGEAGEPGE-------RGLKG------HRGFTGLQ 1070
Query: 712 GNEPPPPPPPFRGARG--GRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRP 769
G PP P +GA G G SG P G GP G G G GP G G S P
Sbjct: 1071 GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP-SGKDGANGIPGPIGPPGPRGRSGETGP 1129
Query: 770 HEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHE-GP 803
PG G GPG M G P E GP
Sbjct: 1130 AGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1164
Score = 47.0 bits (110), Expect = 8e-05
Identities = 57/177 (32%), Positives = 64/177 (36%), Gaps = 52/177 (29%)
Query: 539 PGGSG--GSPDGAG--GSKLPPVLANLMGSMGAG--------KGPQGPGGG--------- 577
PG G GSP AG G + A G MG +GPQGP G
Sbjct: 998 PGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGE 1057
Query: 578 -GINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-GPI-------ANG 628
G+ T + G P P P G GP GP+ ANG
Sbjct: 1058 RGLKGHRGFTGLQGLPGP-------PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANG 1110
Query: 629 FP-PGGPGGPKGMQHFPPGPGGPM--PGPHGGPGGP-----------VGPRLLGPPP 671
P P GP GP+G GP GP PGP G PG P +GPR GP P
Sbjct: 1111 IPGPIGPPGPRGRSG-ETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1166
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 118 bits (296), Expect = 2e-26
Identities = 159/499 (31%), Positives = 183/499 (36%), Gaps = 98/499 (19%)
Query: 513 EPIPPKLIPLDEECSMDETP-YVETLEPGGSGGSPD--GAGGSKLPPVLANLMGSMGAGK 569
+P PP L+ + + P Y P GS G P GA G K L+ G G +
Sbjct: 696 DPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGE-R 754
Query: 570 GPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLG----PGPI 625
GP GP G P + K D PHG G PGP
Sbjct: 755 GPTGPRG------------QRGPRGATGKSGAKGTSGGDG------PHGPPGERGLPGPQ 796
Query: 626 A-NGFP-PGGPGGPKGMQHFPPGPG-----------GPMPGPHG--------GPGGPVGP 664
NGFP P GP GP G P PG GP PGP G G GP+G
Sbjct: 797 GPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP-PGPPGVVGPQGAAGETGPMGE 855
Query: 665 R-LLGPPPPP-------------RGGDPFWDGPGDPMRGGP--MRGGPGPGPGPYHRGRG 708
R GPP PP GDP PG P + GP +RG PG P G
Sbjct: 856 RGHPGPPGPPGEQGLPGTAGKEGTKGDP--GPPGAPGKDGPAGLRGFPGERGLPGTAGGP 913
Query: 709 GRGGNEPPPPPPPFRGA---RGGRSGGGP--PNGRGGPGG--GMVGGGGHRPHEGPGGGM 761
G GNE P PP G+ RG GGP P GR GP G G G G +GP G
Sbjct: 914 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPT 973
Query: 762 GNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG-----GHRPHEGPGG----------- 805
G P PG G +G G +G G G++ GP G
Sbjct: 974 GRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQP 1033
Query: 806 GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHD 863
G +G G GP G GA G G R GP G +G G P G G G P
Sbjct: 1034 GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVG--PMG 1091
Query: 864 VPGHRGHDHRGPP-PHEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNRPVCRHFMMKG-NC 921
PG G RGP P+ G GP GG G+ G G G+ + + +KG
Sbjct: 1092 PPGPPG--PRGPAGPNGADGPQGP-PGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRG 1148
Query: 922 RYENNCAFYHPGVNGPPLP 940
PG GPP P
Sbjct: 1149 ERGEKGESGQPGEPGPPGP 1167
Score = 102 bits (253), Expect = 2e-21
Identities = 138/461 (29%), Positives = 167/461 (36%), Gaps = 103/461 (22%)
Query: 504 PHEPDPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMG 563
P +P+ +P P EE + E+ + LE G P G G K P +
Sbjct: 258 PQNQEPQSQDPTP------GEEEEILESSLLPPLEEAAHG--PRGLKGEKGEPAVLEPGM 309
Query: 564 SMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPG 623
+ GP+GP G ++G P + + P + +P PG
Sbjct: 310 LVEGPPGPEGPAG-----------LIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPG 358
Query: 624 PIANG----FPPGGPGGPKG-------------------MQHFPPGPGG--PMPGPHGGP 658
P F G GG KG PPGP G PGP G P
Sbjct: 359 PPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQP 418
Query: 659 G-----------GPVGPR----LLGPPPPP-RGGDPFWDG----PGDPMRGGPMRGGPGP 698
G GP GPR L GPP R G DG PGDP G RG G
Sbjct: 419 GSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD-RGFDGL 477
Query: 699 GPGPYHRGRGGRGGNEPPPPPPPFRGARG--------GRSGGGPPNGRGGPGG--GMVGG 748
P +G G G + P PP G RG G G P G GP G G+ G
Sbjct: 478 PGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGP 537
Query: 749 GGHRPHEGPGGGMGNSSGHRPHEGPGGGMGS-GHRPHEGPGGSMGGGGGHRPHEGPG--- 804
G R +GP G G S G + GP G G+ G + GP G++G G P PG
Sbjct: 538 PGVRGMDGPQGPKG-SLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPG 596
Query: 805 -GGISGGSGHRPHEGPGGGMGAGGGHRP-----HEGPGGSMGGSG-----GHRPHEG--- 850
G G GH EGP G G G P + GP G G G GH+ +G
Sbjct: 597 MPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG 656
Query: 851 -PGHGGPHGHRPH----DVPGHRGHDHRGPPPHEHRGHDGP 886
PG G G + VPG RG D P +G GP
Sbjct: 657 FPGFKGDIGVKGDRGEVGVPGSRGED----GPEGPKGRTGP 693
Score = 100 bits (249), Expect = 6e-21
Identities = 121/373 (32%), Positives = 133/373 (35%), Gaps = 76/373 (20%)
Query: 539 PGGSGGSPDGAG--GSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G G G PP G GA GPQGP GG N+ G P
Sbjct: 1077 PSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-GPQGPPGGVGNLGP--PGEKGEPGESG 1133
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPGGPGGPKGMQHFPPGPGGPM- 651
S + +P G+ GP G PG PG PPGP GP
Sbjct: 1134 SPGIQGEP-------------GVKGPRGERGEKGESGQPGEPG--------PPGPKGPTG 1172
Query: 652 -PGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPY-HRGRGG 709
GP G PG PVG G P PP G P RG G PGP G G
Sbjct: 1173 DDGPKGNPG-PVG--FPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPG 1229
Query: 710 RGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPHEGPGG--GMGNSSG 766
G P P G +GG+ G P G PG G VG G GP G G+ S G
Sbjct: 1230 PLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVG 1289
Query: 767 H--RP----HEGPGGGMG-------------SGHRPHEGPGGSMGGGG-----GHRPHEG 802
RP GP G +G G + H G G +G G G R G
Sbjct: 1290 QQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1349
Query: 803 PGG--------GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPG 852
P G GI G SG GP G G G G + GPGG G G P PG
Sbjct: 1350 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGP---PG 1406
Query: 853 HGGPHGHRPHDVP 865
H GP G +P
Sbjct: 1407 HPGPPGEVIQPLP 1419
Score = 98.6 bits (244), Expect = 2e-20
Identities = 126/411 (30%), Positives = 148/411 (36%), Gaps = 62/411 (15%)
Query: 538 EPGGSGG-SPDGAGGSKLPPVLANLMGSMGA-----GKGPQGPGGGGINVQEILTSIMGS 591
+PG G DG G + P L G+ G +GP GP G + E + G
Sbjct: 882 DPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGG 941
Query: 592 PNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-------GPIANGFPPGGPG--------- 635
P P + P + K + G +GP GP+ P G PG
Sbjct: 942 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 1001
Query: 636 -----GPKGM-----QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGD 685
G KG +H PPGP GP+ GP G G P RG + GD
Sbjct: 1002 EVGDPGQKGTKGNKGEHGPPGPPGPI-----GPVGQPGAAGADGEPGARGPQGHFGAKGD 1056
Query: 686 PMRGGPMRGGPGPG-----PGPY-HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 739
G G PGP PGP +G G G PP PP RG G GP +G
Sbjct: 1057 EGTRG-FNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGP---QG 1112
Query: 740 GPGG-GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMG----SGHRPHEGPGGSMGGG 794
PGG G +G G + G G G G +GP G G SG GP G G
Sbjct: 1113 PPGGVGNLGPPGEKGEPGESGSPG-IQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPT 1171
Query: 795 GGHRPHEGPGG-GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGP 851
G P PG G G G GP G GA G G G GS G +G + P
Sbjct: 1172 GDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPL 1231
Query: 852 GHGGPHGHRPHDVPGHRGHDHRGPP----PHEHRGHDGPGHGGGGHRGHDG 898
G GP G P G +G P G GP G G G DG
Sbjct: 1232 GKRGPAG-SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPA-GPAGKPGPDG 1280
Score = 95.9 bits (237), Expect = 2e-19
Identities = 144/445 (32%), Positives = 159/445 (35%), Gaps = 99/445 (22%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
PG SG P G G K PP + G G GPQGP G G P P +
Sbjct: 517 PGESG--PRGLLGPKGPPGIPGPPGVRGMD-GPQGPKGS--------LGPQGEPGP-PGQ 564
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP-------GPIANGFPPGGPG-----GPKGMQHFPPG 646
+ + + PHG GP G + PPG PG G KG Q P G
Sbjct: 565 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQG-PSG 623
Query: 647 PGGPM--PGPHGGPGGPVGPRLLGPPPPPRGGDPF-----------------------WD 681
P GP+ PGP G G G R L +G D F D
Sbjct: 624 PQGPLGYPGPRGVKGVD-GIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGED 682
Query: 682 GPGDPM-RGGPMRGGPGPG-----------PG-PYHRGRGGRGGNEPPPPPPPF---RGA 725
GP P R GP G PGP PG P + GR G G+ P P +GA
Sbjct: 683 GPEGPKGRTGPT-GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 741
Query: 726 RGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPG-----GGMG-S 779
RG G P G GP G G G R G G G S G PH PG G G +
Sbjct: 742 RGLSGKSG-PRGERGPTGPR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN 799
Query: 780 GHRPHEGPGGSMGGGG--GHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGG--GHRPHE 833
G +GP G G G GH G G G +G G GP G G G G R H
Sbjct: 800 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHP 859
Query: 834 GP------------GGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG--HDHRGPPPHE 879
GP G G G P PG GP G R PG RG GP
Sbjct: 860 GPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLR--GFPGERGLPGTAGGPGLKG 917
Query: 880 HRGHDGPGHGGGGHRGHDGGHSHGG 904
+ G GP G G G G GG
Sbjct: 918 NEGPSGP-PGPAGSPGERGAAGSGG 941
Score = 94.7 bits (234), Expect = 3e-19
Identities = 134/415 (32%), Positives = 155/415 (37%), Gaps = 80/415 (19%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G G P GA G+ P G GA KG +G G N + G P PS
Sbjct: 1026 PIGPVGQP-GAAGADGEPGARGPQGHFGA-KGDEGTRG--FNGPPGPIGLQGLPG--PSG 1079
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPG--GPMPGPHG 656
E + D P G GP P G P GP G G Q P G G GP PG G
Sbjct: 1080 EKGETGDVG--------PMGPPGP-PGPRG--PAGPNGADGPQGPPGGVGNLGP-PGEKG 1127
Query: 657 GPGGPVGPRLLGPP--PPPRG-----------GDPFWDGPGDPMRGGPMRGGPGP----- 698
PG P + G P PRG G+P GP P +G PGP
Sbjct: 1128 EPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG 1187
Query: 699 GPGPYH----RGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG--GPGG-----GMVG 747
PGP RG+ G G+ P G+ G GPP G GP G G G
Sbjct: 1188 DPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1247
Query: 748 GGGHRPHEGPGGGMGNS-----SGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGGGHRPHE 801
G G + G G G + +G GP G G G +G G+ G G P
Sbjct: 1248 GKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVG 1307
Query: 802 GPG----GGISGGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSG--GHRPHEG 850
PG G +G G + H G G +G G G R GP GS G G G G
Sbjct: 1308 PPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASG 1367
Query: 851 P-GHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGG 904
P G GGP G +PG G P +G GPG G G +G G H G
Sbjct: 1368 PIGPGGPPG-----LPGPAG-------PKGAKGATGPG-GPKGEKGVQGPPGHPG 1409
Score = 46.6 bits (109), Expect = 1e-04
Identities = 73/255 (28%), Positives = 90/255 (35%), Gaps = 51/255 (20%)
Query: 464 PRPLVLPSPLVTPGSNSQERYIQAEREKGILQELFLNKESPHEPDPEPYEPIPPKLIPLD 523
P PL P +PGS ++ A+ + G + K P P +P P L L
Sbjct: 1228 PGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAP--GKTGPVGPAGPAGKPGPDGLRGLP 1285
Query: 524 EECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQE 583
P G G P G PP L L G GA KG +G G
Sbjct: 1286 GSVGQQGRPGAT-----GQAGPPGPVG----PPGLPGLRGDAGA-KGEKGHPG------- 1328
Query: 584 ILTSIMGSPNSH--PSEELLKQPDYSDKIK-QMLVPHGLLGPGPIANGFPPG-------- 632
L ++G P + L P S K +M +P GPI G PPG
Sbjct: 1329 -LIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA---SGPIGPGGPPGLPGPAGPK 1384
Query: 633 ------GPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPR----GGDPFWDG 682
GPGGPKG + G GP PG G PG + P + P R G +
Sbjct: 1385 GAKGATGPGGPKGEK----GVQGP-PGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQED 1439
Query: 683 PGDPMRGGPMRGGPG 697
P G P G PG
Sbjct: 1440 EAIPTGGAP--GSPG 1452
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 118 bits (296), Expect = 2e-26
Identities = 159/499 (31%), Positives = 183/499 (36%), Gaps = 98/499 (19%)
Query: 513 EPIPPKLIPLDEECSMDETP-YVETLEPGGSGGSPD--GAGGSKLPPVLANLMGSMGAGK 569
+P PP L+ + + P Y P GS G P GA G K L+ G G +
Sbjct: 675 DPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGE-R 733
Query: 570 GPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLG----PGPI 625
GP GP G P + K D PHG G PGP
Sbjct: 734 GPTGPRG------------QRGPRGATGKSGAKGTSGGDG------PHGPPGERGLPGPQ 775
Query: 626 A-NGFP-PGGPGGPKGMQHFPPGPG-----------GPMPGPHG--------GPGGPVGP 664
NGFP P GP GP G P PG GP PGP G G GP+G
Sbjct: 776 GPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP-PGPPGVVGPQGAAGETGPMGE 834
Query: 665 R-LLGPPPPP-------------RGGDPFWDGPGDPMRGGP--MRGGPGPGPGPYHRGRG 708
R GPP PP GDP PG P + GP +RG PG P G
Sbjct: 835 RGHPGPPGPPGEQGLPGTAGKEGTKGDP--GPPGAPGKDGPAGLRGFPGERGLPGTAGGP 892
Query: 709 GRGGNEPPPPPPPFRGA---RGGRSGGGP--PNGRGGPGG--GMVGGGGHRPHEGPGGGM 761
G GNE P PP G+ RG GGP P GR GP G G G G +GP G
Sbjct: 893 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPT 952
Query: 762 GNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG-----GHRPHEGPGG----------- 805
G P PG G +G G +G G G++ GP G
Sbjct: 953 GRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQP 1012
Query: 806 GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHD 863
G +G G GP G GA G G R GP G +G G P G G G P
Sbjct: 1013 GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVG--PMG 1070
Query: 864 VPGHRGHDHRGPP-PHEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNRPVCRHFMMKG-NC 921
PG G RGP P+ G GP GG G+ G G G+ + + +KG
Sbjct: 1071 PPGPPG--PRGPAGPNGADGPQGP-PGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRG 1127
Query: 922 RYENNCAFYHPGVNGPPLP 940
PG GPP P
Sbjct: 1128 ERGEKGESGQPGEPGPPGP 1146
Score = 100 bits (249), Expect = 6e-21
Identities = 121/373 (32%), Positives = 133/373 (35%), Gaps = 76/373 (20%)
Query: 539 PGGSGGSPDGAG--GSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G G G PP G GA GPQGP GG N+ G P
Sbjct: 1056 PSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-GPQGPPGGVGNLGP--PGEKGEPGESG 1112
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPGGPGGPKGMQHFPPGPGGPM- 651
S + +P G+ GP G PG PG PPGP GP
Sbjct: 1113 SPGIQGEP-------------GVKGPRGERGEKGESGQPGEPG--------PPGPKGPTG 1151
Query: 652 -PGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPY-HRGRGG 709
GP G PG PVG G P PP G P RG G PGP G G
Sbjct: 1152 DDGPKGNPG-PVG--FPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPG 1208
Query: 710 RGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPHEGPGG--GMGNSSG 766
G P P G +GG+ G P G PG G VG G GP G G+ S G
Sbjct: 1209 PLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVG 1268
Query: 767 H--RP----HEGPGGGMG-------------SGHRPHEGPGGSMGGGG-----GHRPHEG 802
RP GP G +G G + H G G +G G G R G
Sbjct: 1269 QQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1328
Query: 803 PGG--------GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPG 852
P G GI G SG GP G G G G + GPGG G G P PG
Sbjct: 1329 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGP---PG 1385
Query: 853 HGGPHGHRPHDVP 865
H GP G +P
Sbjct: 1386 HPGPPGEVIQPLP 1398
Score = 100 bits (248), Expect = 8e-21
Identities = 130/392 (33%), Positives = 155/392 (39%), Gaps = 68/392 (17%)
Query: 539 PGGSGGSPDGAG--GSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G+P G G + PP A L GS GA PG G ++ +L GS
Sbjct: 305 PPGIQGNPGPVGDPGERGPPGRAGLPGSDGA------PGPPGTSL--MLPFRFGSGGGDK 356
Query: 597 SEELLKQPDYSDKIKQM--LVPHGLLGP-GPIANGFPPGGPGGPKGMQHFPPGPGGPMPG 653
+ Q + I Q L G GP G P G PG P G++ G G +
Sbjct: 357 GPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSP-GLK----GESGDL-- 409
Query: 654 PHGGPGGPVGPRLLGPPPPPRG--GDPFWDG----PGDPMRGGPMRGGPGPGPGPYHRGR 707
GP GP GP+ L PP G G DG PGDP G RG G P +G
Sbjct: 410 ---GPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD-RGFDGLPGLPGEKGH 465
Query: 708 GGRGGNEPPPPPPPFRGARG--------GRSGGGPPNGRGGPGG--GMVGGGGHRPHEGP 757
G G + P PP G RG G G P G GP G G+ G G R +GP
Sbjct: 466 RGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGP 525
Query: 758 GGGMGNSSGHRPHEGPGGGMGS-GHRPHEGPGGSMGGGGGHRPHEGPG----GGISGGSG 812
G G S G + GP G G+ G + GP G++G G P PG G G G
Sbjct: 526 QGPKG-SLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPG 584
Query: 813 HRPHEGPGGGMGAGGGHRP-----HEGPGGSMGGSG-----GHRPHEG----PGHGGPHG 858
H EGP G G G P + GP G G G GH+ +G PG G G
Sbjct: 585 HPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIG 644
Query: 859 HRPH----DVPGHRGHDHRGPPPHEHRGHDGP 886
+ VPG RG D P +G GP
Sbjct: 645 VKGDRGEVGVPGSRGED----GPEGPKGRTGP 672
Score = 98.6 bits (244), Expect = 2e-20
Identities = 126/411 (30%), Positives = 148/411 (36%), Gaps = 62/411 (15%)
Query: 538 EPGGSGG-SPDGAGGSKLPPVLANLMGSMGA-----GKGPQGPGGGGINVQEILTSIMGS 591
+PG G DG G + P L G+ G +GP GP G + E + G
Sbjct: 861 DPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGG 920
Query: 592 PNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-------GPIANGFPPGGPG--------- 635
P P + P + K + G +GP GP+ P G PG
Sbjct: 921 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 980
Query: 636 -----GPKGM-----QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGD 685
G KG +H PPGP GP+ GP G G P RG + GD
Sbjct: 981 EVGDPGQKGTKGNKGEHGPPGPPGPI-----GPVGQPGAAGADGEPGARGPQGHFGAKGD 1035
Query: 686 PMRGGPMRGGPGPG-----PGPY-HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 739
G G PGP PGP +G G G PP PP RG G GP +G
Sbjct: 1036 EGTRG-FNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGP---QG 1091
Query: 740 GPGG-GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMG----SGHRPHEGPGGSMGGG 794
PGG G +G G + G G G G +GP G G SG GP G G
Sbjct: 1092 PPGGVGNLGPPGEKGEPGESGSPG-IQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPT 1150
Query: 795 GGHRPHEGPGG-GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGP 851
G P PG G G G GP G GA G G G GS G +G + P
Sbjct: 1151 GDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPL 1210
Query: 852 GHGGPHGHRPHDVPGHRGHDHRGPP----PHEHRGHDGPGHGGGGHRGHDG 898
G GP G P G +G P G GP G G G DG
Sbjct: 1211 GKRGPAG-SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPA-GPAGKPGPDG 1259
Score = 95.9 bits (237), Expect = 2e-19
Identities = 144/445 (32%), Positives = 159/445 (35%), Gaps = 99/445 (22%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
PG SG P G G K PP + G G GPQGP G G P P +
Sbjct: 496 PGESG--PRGLLGPKGPPGIPGPPGVRGMD-GPQGPKGS--------LGPQGEPGP-PGQ 543
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP-------GPIANGFPPGGPG-----GPKGMQHFPPG 646
+ + + PHG GP G + PPG PG G KG Q P G
Sbjct: 544 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQG-PSG 602
Query: 647 PGGPM--PGPHGGPGGPVGPRLLGPPPPPRGGDPF-----------------------WD 681
P GP+ PGP G G G R L +G D F D
Sbjct: 603 PQGPLGYPGPRGVKGVD-GIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGED 661
Query: 682 GPGDPM-RGGPMRGGPGPG-----------PG-PYHRGRGGRGGNEPPPPPPPF---RGA 725
GP P R GP G PGP PG P + GR G G+ P P +GA
Sbjct: 662 GPEGPKGRTGPT-GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 720
Query: 726 RGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPG-----GGMG-S 779
RG G P G GP G G G R G G G S G PH PG G G +
Sbjct: 721 RGLSGKSG-PRGERGPTGPR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN 778
Query: 780 GHRPHEGPGGSMGGGG--GHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGG--GHRPHE 833
G +GP G G G GH G G G +G G GP G G G G R H
Sbjct: 779 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHP 838
Query: 834 GP------------GGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG--HDHRGPPPHE 879
GP G G G P PG GP G R PG RG GP
Sbjct: 839 GPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLR--GFPGERGLPGTAGGPGLKG 896
Query: 880 HRGHDGPGHGGGGHRGHDGGHSHGG 904
+ G GP G G G G GG
Sbjct: 897 NEGPSGP-PGPAGSPGERGAAGSGG 920
Score = 94.7 bits (234), Expect = 3e-19
Identities = 134/415 (32%), Positives = 155/415 (37%), Gaps = 80/415 (19%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G G P GA G+ P G GA KG +G G N + G P PS
Sbjct: 1005 PIGPVGQP-GAAGADGEPGARGPQGHFGA-KGDEGTRG--FNGPPGPIGLQGLPG--PSG 1058
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPG--GPMPGPHG 656
E + D P G GP P G P GP G G Q P G G GP PG G
Sbjct: 1059 EKGETGDVG--------PMGPPGP-PGPRG--PAGPNGADGPQGPPGGVGNLGP-PGEKG 1106
Query: 657 GPGGPVGPRLLGPP--PPPRG-----------GDPFWDGPGDPMRGGPMRGGPGP----- 698
PG P + G P PRG G+P GP P +G PGP
Sbjct: 1107 EPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG 1166
Query: 699 GPGPYH----RGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG--GPGG-----GMVG 747
PGP RG+ G G+ P G+ G GPP G GP G G G
Sbjct: 1167 DPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1226
Query: 748 GGGHRPHEGPGGGMGNS-----SGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGGGHRPHE 801
G G + G G G + +G GP G G G +G G+ G G P
Sbjct: 1227 GKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVG 1286
Query: 802 GPG----GGISGGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSG--GHRPHEG 850
PG G +G G + H G G +G G G R GP GS G G G G
Sbjct: 1287 PPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASG 1346
Query: 851 P-GHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGG 904
P G GGP G +PG G P +G GPG G G +G G H G
Sbjct: 1347 PIGPGGPPG-----LPGPAG-------PKGAKGATGPG-GPKGEKGVQGPPGHPG 1388
Score = 92.0 bits (227), Expect = 2e-18
Identities = 120/371 (32%), Positives = 137/371 (36%), Gaps = 78/371 (21%)
Query: 591 SPNSHPSEELLKQPDYSDKIKQMLV-PHGLLG---------PGPIANGFPPGGPGGPKGM 640
SP PS L +P + Q P GL G PG + G P GP GP G+
Sbjct: 247 SPQQQPSR--LHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGMLVEG--PPGPEGPAGL 302
Query: 641 QHFPPGPGGPMPGPHGGPG--GPVG----PRLLGPPPPPRGG--DPFWDGPGDPMRGG-- 690
PPG G PGP G PG GP G P G P PP PF G G +G
Sbjct: 303 IG-PPGIQG-NPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVV 360
Query: 691 ----------------PMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGP 734
+RG PGP G GR G P P +G G GP
Sbjct: 361 AAQEAQAQAILQQARLALRGPPGP------MGYTGRPGPLGQPGSPGLKGESGDLGPQGP 414
Query: 735 --PNGRGGPGG-----GMVGGGGHRPHEGPGG--------GMGNSSGHRPHEGPGGGMG- 778
P G GP G G G G R G G G+ G + H G G G
Sbjct: 415 RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGL 474
Query: 779 ------SGHRPHEGPGGSMG--GGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGG 828
G R +G G G G G R GP G GI G G R +GP G G+ G
Sbjct: 475 PGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGS-LG 533
Query: 829 HRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPPPHEHRGHDGPG 887
+ GP G G G G GPHG + P PG G PP H G +GP
Sbjct: 534 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP-GHPGKEGP- 591
Query: 888 HGGGGHRGHDG 898
G G++G G
Sbjct: 592 PGTKGNQGPSG 602
Score = 46.6 bits (109), Expect = 1e-04
Identities = 73/255 (28%), Positives = 90/255 (35%), Gaps = 51/255 (20%)
Query: 464 PRPLVLPSPLVTPGSNSQERYIQAEREKGILQELFLNKESPHEPDPEPYEPIPPKLIPLD 523
P PL P +PGS ++ A+ + G + K P P +P P L L
Sbjct: 1207 PGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAP--GKTGPVGPAGPAGKPGPDGLRGLP 1264
Query: 524 EECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQE 583
P G G P G PP L L G GA KG +G G
Sbjct: 1265 GSVGQQGRPGAT-----GQAGPPGPVG----PPGLPGLRGDAGA-KGEKGHPG------- 1307
Query: 584 ILTSIMGSPNSH--PSEELLKQPDYSDKIK-QMLVPHGLLGPGPIANGFPPG-------- 632
L ++G P + L P S K +M +P GPI G PPG
Sbjct: 1308 -LIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA---SGPIGPGGPPGLPGPAGPK 1363
Query: 633 ------GPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPR----GGDPFWDG 682
GPGGPKG + G GP PG G PG + P + P R G +
Sbjct: 1364 GAKGATGPGGPKGEK----GVQGP-PGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQED 1418
Query: 683 PGDPMRGGPMRGGPG 697
P G P G PG
Sbjct: 1419 EAIPTGGAP--GSPG 1431
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 118 bits (296), Expect = 2e-26
Identities = 159/499 (31%), Positives = 183/499 (36%), Gaps = 98/499 (19%)
Query: 513 EPIPPKLIPLDEECSMDETP-YVETLEPGGSGGSPD--GAGGSKLPPVLANLMGSMGAGK 569
+P PP L+ + + P Y P GS G P GA G K L+ G G +
Sbjct: 782 DPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGE-R 840
Query: 570 GPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLG----PGPI 625
GP GP G P + K D PHG G PGP
Sbjct: 841 GPTGPRG------------QRGPRGATGKSGAKGTSGGDG------PHGPPGERGLPGPQ 882
Query: 626 A-NGFP-PGGPGGPKGMQHFPPGPG-----------GPMPGPHG--------GPGGPVGP 664
NGFP P GP GP G P PG GP PGP G G GP+G
Sbjct: 883 GPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP-PGPPGVVGPQGAAGETGPMGE 941
Query: 665 R-LLGPPPPP-------------RGGDPFWDGPGDPMRGGP--MRGGPGPGPGPYHRGRG 708
R GPP PP GDP PG P + GP +RG PG P G
Sbjct: 942 RGHPGPPGPPGEQGLPGTAGKEGTKGDP--GPPGAPGKDGPAGLRGFPGERGLPGTAGGP 999
Query: 709 GRGGNEPPPPPPPFRGA---RGGRSGGGP--PNGRGGPGG--GMVGGGGHRPHEGPGGGM 761
G GNE P PP G+ RG GGP P GR GP G G G G +GP G
Sbjct: 1000 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPT 1059
Query: 762 GNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG-----GHRPHEGPGG----------- 805
G P PG G +G G +G G G++ GP G
Sbjct: 1060 GRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQP 1119
Query: 806 GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHD 863
G +G G GP G GA G G R GP G +G G P G G G P
Sbjct: 1120 GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVG--PMG 1177
Query: 864 VPGHRGHDHRGPP-PHEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNRPVCRHFMMKG-NC 921
PG G RGP P+ G GP GG G+ G G G+ + + +KG
Sbjct: 1178 PPGPPG--PRGPAGPNGADGPQGP-PGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRG 1234
Query: 922 RYENNCAFYHPGVNGPPLP 940
PG GPP P
Sbjct: 1235 ERGEKGESGQPGEPGPPGP 1253
Score = 101 bits (252), Expect = 3e-21
Identities = 133/441 (30%), Positives = 158/441 (35%), Gaps = 95/441 (21%)
Query: 524 EECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQE 583
EE + ET G + P G G K P + + GP+GP G
Sbjct: 356 EETELGPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAG------- 408
Query: 584 ILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANG----FPPGGPGGPKG 639
++G P + + P + +P PGP F G GG KG
Sbjct: 409 ----LIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKG 464
Query: 640 -------------------MQHFPPGPGG--PMPGPHGGPG-----------GPVGPR-- 665
PPGP G PGP G PG GP GPR
Sbjct: 465 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGP 524
Query: 666 --LLGPPPPP-RGGDPFWDG----PGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPP 718
L GPP R G DG PGDP G RG G P +G G G + P
Sbjct: 525 QGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD-RGFDGLPGLPGEKGHRGDTGAQGLPG 583
Query: 719 PPPFRGARG--------GRSGGGPPNGRGGPGG--GMVGGGGHRPHEGPGGGMGNSSGHR 768
PP G RG G G P G GP G G+ G G R +GP G G S G +
Sbjct: 584 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKG-SLGPQ 642
Query: 769 PHEGPGGGMGS-GHRPHEGPGGSMGGGGGHRPHEGPG----GGISGGSGHRPHEGPGGGM 823
GP G G+ G + GP G++G G P PG G G GH EGP G
Sbjct: 643 GEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTK 702
Query: 824 GAGGGHRP-----HEGPGGSMGGSG-----GHRPHEG----PGHGGPHGHRPH----DVP 865
G G P + GP G G G GH+ +G PG G G + VP
Sbjct: 703 GNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVP 762
Query: 866 GHRGHDHRGPPPHEHRGHDGP 886
G RG D P +G GP
Sbjct: 763 GSRGED----GPEGPKGRTGP 779
Score = 100 bits (249), Expect = 6e-21
Identities = 121/373 (32%), Positives = 133/373 (35%), Gaps = 76/373 (20%)
Query: 539 PGGSGGSPDGAG--GSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G G G PP G GA GPQGP GG N+ G P
Sbjct: 1163 PSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-GPQGPPGGVGNLGP--PGEKGEPGESG 1219
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPGGPGGPKGMQHFPPGPGGPM- 651
S + +P G+ GP G PG PG PPGP GP
Sbjct: 1220 SPGIQGEP-------------GVKGPRGERGEKGESGQPGEPG--------PPGPKGPTG 1258
Query: 652 -PGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPY-HRGRGG 709
GP G PG PVG G P PP G P RG G PGP G G
Sbjct: 1259 DDGPKGNPG-PVG--FPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPG 1315
Query: 710 RGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPHEGPGG--GMGNSSG 766
G P P G +GG+ G P G PG G VG G GP G G+ S G
Sbjct: 1316 PLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVG 1375
Query: 767 H--RP----HEGPGGGMG-------------SGHRPHEGPGGSMGGGG-----GHRPHEG 802
RP GP G +G G + H G G +G G G R G
Sbjct: 1376 QQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1435
Query: 803 PGG--------GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPG 852
P G GI G SG GP G G G G + GPGG G G P PG
Sbjct: 1436 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGP---PG 1492
Query: 853 HGGPHGHRPHDVP 865
H GP G +P
Sbjct: 1493 HPGPPGEVIQPLP 1505
Score = 98.6 bits (244), Expect = 2e-20
Identities = 126/411 (30%), Positives = 148/411 (36%), Gaps = 62/411 (15%)
Query: 538 EPGGSGG-SPDGAGGSKLPPVLANLMGSMGA-----GKGPQGPGGGGINVQEILTSIMGS 591
+PG G DG G + P L G+ G +GP GP G + E + G
Sbjct: 968 DPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGG 1027
Query: 592 PNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-------GPIANGFPPGGPG--------- 635
P P + P + K + G +GP GP+ P G PG
Sbjct: 1028 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 1087
Query: 636 -----GPKGM-----QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGD 685
G KG +H PPGP GP+ GP G G P RG + GD
Sbjct: 1088 EVGDPGQKGTKGNKGEHGPPGPPGPI-----GPVGQPGAAGADGEPGARGPQGHFGAKGD 1142
Query: 686 PMRGGPMRGGPGPG-----PGPY-HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 739
G G PGP PGP +G G G PP PP RG G GP +G
Sbjct: 1143 EGTRG-FNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGP---QG 1198
Query: 740 GPGG-GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMG----SGHRPHEGPGGSMGGG 794
PGG G +G G + G G G G +GP G G SG GP G G
Sbjct: 1199 PPGGVGNLGPPGEKGEPGESGSPG-IQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPT 1257
Query: 795 GGHRPHEGPGG-GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGP 851
G P PG G G G GP G GA G G G GS G +G + P
Sbjct: 1258 GDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPL 1317
Query: 852 GHGGPHGHRPHDVPGHRGHDHRGPP----PHEHRGHDGPGHGGGGHRGHDG 898
G GP G P G +G P G GP G G G DG
Sbjct: 1318 GKRGPAG-SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPA-GPAGKPGPDG 1366
Score = 95.9 bits (237), Expect = 2e-19
Identities = 144/445 (32%), Positives = 159/445 (35%), Gaps = 99/445 (22%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
PG SG P G G K PP + G G GPQGP G G P P +
Sbjct: 603 PGESG--PRGLLGPKGPPGIPGPPGVRGMD-GPQGPKGS--------LGPQGEPGP-PGQ 650
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP-------GPIANGFPPGGPG-----GPKGMQHFPPG 646
+ + + PHG GP G + PPG PG G KG Q P G
Sbjct: 651 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQG-PSG 709
Query: 647 PGGPM--PGPHGGPGGPVGPRLLGPPPPPRGGDPF-----------------------WD 681
P GP+ PGP G G G R L +G D F D
Sbjct: 710 PQGPLGYPGPRGVKGVD-GIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGED 768
Query: 682 GPGDPM-RGGPMRGGPGPG-----------PG-PYHRGRGGRGGNEPPPPPPPF---RGA 725
GP P R GP G PGP PG P + GR G G+ P P +GA
Sbjct: 769 GPEGPKGRTGPT-GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 827
Query: 726 RGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPG-----GGMG-S 779
RG G P G GP G G G R G G G S G PH PG G G +
Sbjct: 828 RGLSGKSG-PRGERGPTGPR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN 885
Query: 780 GHRPHEGPGGSMGGGG--GHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGG--GHRPHE 833
G +GP G G G GH G G G +G G GP G G G G R H
Sbjct: 886 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHP 945
Query: 834 GP------------GGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG--HDHRGPPPHE 879
GP G G G P PG GP G R PG RG GP
Sbjct: 946 GPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLR--GFPGERGLPGTAGGPGLKG 1003
Query: 880 HRGHDGPGHGGGGHRGHDGGHSHGG 904
+ G GP G G G G GG
Sbjct: 1004 NEGPSGP-PGPAGSPGERGAAGSGG 1027
Score = 94.7 bits (234), Expect = 3e-19
Identities = 134/415 (32%), Positives = 155/415 (37%), Gaps = 80/415 (19%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G G P GA G+ P G GA KG +G G N + G P PS
Sbjct: 1112 PIGPVGQP-GAAGADGEPGARGPQGHFGA-KGDEGTRG--FNGPPGPIGLQGLPG--PSG 1165
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPG--GPMPGPHG 656
E + D P G GP P G P GP G G Q P G G GP PG G
Sbjct: 1166 EKGETGDVG--------PMGPPGP-PGPRG--PAGPNGADGPQGPPGGVGNLGP-PGEKG 1213
Query: 657 GPGGPVGPRLLGPP--PPPRG-----------GDPFWDGPGDPMRGGPMRGGPGP----- 698
PG P + G P PRG G+P GP P +G PGP
Sbjct: 1214 EPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG 1273
Query: 699 GPGPYH----RGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG--GPGG-----GMVG 747
PGP RG+ G G+ P G+ G GPP G GP G G G
Sbjct: 1274 DPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1333
Query: 748 GGGHRPHEGPGGGMGNS-----SGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGGGHRPHE 801
G G + G G G + +G GP G G G +G G+ G G P
Sbjct: 1334 GKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVG 1393
Query: 802 GPG----GGISGGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSG--GHRPHEG 850
PG G +G G + H G G +G G G R GP GS G G G G
Sbjct: 1394 PPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASG 1453
Query: 851 P-GHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGG 904
P G GGP G +PG G P +G GPG G G +G G H G
Sbjct: 1454 PIGPGGPPG-----LPGPAG-------PKGAKGATGPG-GPKGEKGVQGPPGHPG 1495
Score = 46.6 bits (109), Expect = 1e-04
Identities = 73/255 (28%), Positives = 90/255 (35%), Gaps = 51/255 (20%)
Query: 464 PRPLVLPSPLVTPGSNSQERYIQAEREKGILQELFLNKESPHEPDPEPYEPIPPKLIPLD 523
P PL P +PGS ++ A+ + G + K P P +P P L L
Sbjct: 1314 PGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAP--GKTGPVGPAGPAGKPGPDGLRGLP 1371
Query: 524 EECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQE 583
P G G P G PP L L G GA KG +G G
Sbjct: 1372 GSVGQQGRPGAT-----GQAGPPGPVG----PPGLPGLRGDAGA-KGEKGHPG------- 1414
Query: 584 ILTSIMGSPNSH--PSEELLKQPDYSDKIK-QMLVPHGLLGPGPIANGFPPG-------- 632
L ++G P + L P S K +M +P GPI G PPG
Sbjct: 1415 -LIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA---SGPIGPGGPPGLPGPAGPK 1470
Query: 633 ------GPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPR----GGDPFWDG 682
GPGGPKG + G GP PG G PG + P + P R G +
Sbjct: 1471 GAKGATGPGGPKGEK----GVQGP-PGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQED 1525
Query: 683 PGDPMRGGPMRGGPG 697
P G P G PG
Sbjct: 1526 EAIPTGGAP--GSPG 1538
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 117 bits (293), Expect = 5e-26
Identities = 126/369 (34%), Positives = 147/369 (39%), Gaps = 63/369 (17%)
Query: 568 GKGPQGPGGGGIN----------VQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPH 617
G GP+ GGG +Q + +G P + L+ P L+P
Sbjct: 21 GCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMP-------LPLLPM 73
Query: 618 GLLG-PGPIANGFPPGGPG--GPKGMQHFPPGPGGPMPGPHG--GPGGPVGPRLLGPPPP 672
L G PGP PG PG GP G FP PG PG HG GP GP G +G P
Sbjct: 74 DLKGEPGP------PGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGP 127
Query: 673 PRGGDPFWDGP-GDP-MRGGP-------MRGGPGPG--PGPYHRGRGGRGGNEPPPPPPP 721
P G P GP G P +RG P +RG PGP PGP G+ G + P PP
Sbjct: 128 P--GLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPG 185
Query: 722 FRGARGGRSGGGPPNGRGGPGGGMVG----------GGGHRPHEGPG-GGMGNSSGHRPH 770
F+G G + GPP RG G VG GG P PG G+G
Sbjct: 186 FQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLP 245
Query: 771 EGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHR 830
PG SG GP G G G P G G+ G +G +GP G G G
Sbjct: 246 GAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPG--- 302
Query: 831 PHEGPGGSMGGSGGHRPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPPPHEHRGHDGPGHG 889
GP G +G +G + PG GP G R P VPG G D P G GP G
Sbjct: 303 -TRGPPGLIGPTG----YGMPGLPGPKGDRGPAGVPGLLG-DRGEPGEDGEPGEQGP-QG 355
Query: 890 GGGHRGHDG 898
GG G G
Sbjct: 356 LGGPPGLPG 364
Score = 94.4 bits (233), Expect = 5e-19
Identities = 123/378 (32%), Positives = 143/378 (37%), Gaps = 63/378 (16%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEIL--TSIMGSPNSHP 596
PG SG + G G++ P G G P PG G+ + + G+P
Sbjct: 164 PGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGG 223
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFP-----PGGPGGPKGMQHFPPGPGGPM 651
+ P GL PGP G P PG P G KG + PPG +
Sbjct: 224 APG----------------PPGL--PGPAGLGKPGLDGLPGAP-GDKG-ESGPPG----V 259
Query: 652 PGPHGGPGGPVGPRLLGPP------PPPRGGDPFWDGPGDPMRGGPMRGGPG-PGPGPYH 704
PGP G PG VGP+ GPP P G P GP RG PG GP Y
Sbjct: 260 PGPRGEPGA-VGPK--GPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYG 316
Query: 705 R-GRGGRGGNEPPPPPPPFRGARG-----GRSGGGPPNGRGGPGGGMVGGGGHRPHEGPG 758
G G G+ P P G RG G G P G GGP G+ G G GP
Sbjct: 317 MPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGP-PGLPGSAGLPGRRGPP 375
Query: 759 GGMGNSSGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGG--GHRPHEGPGG--GISGGSGH 813
G G + GPGG G G R +GP G G G G R G G G +G G
Sbjct: 376 GPKGEA-------GPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGE 428
Query: 814 RPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGH-RPHDVPGHRGHDH 872
G GG G G +G G G G P PG GP G P +PG +G
Sbjct: 429 PGFTGRPGGPGVAGA-LGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPG 487
Query: 873 RGPPPHEHRGHDGPGHGG 890
PP E R + PG G
Sbjct: 488 LPGPPGEGRAGE-PGTAG 504
Score = 90.5 bits (223), Expect = 7e-18
Identities = 127/403 (31%), Positives = 149/403 (36%), Gaps = 70/403 (17%)
Query: 506 EPDPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKL-PPVLANLMGS 564
EP P+ EP PP L + + + GG+ G P G + L P L L G+
Sbjct: 189 EPGPQG-EPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGA 247
Query: 565 MGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGP 624
G KG GP G + P P K P D + VP PGP
Sbjct: 248 PG-DKGESGPPG------------VPGPRGEPGAVGPKGPPGVDGVG---VPGAAGLPGP 291
Query: 625 IANGFPPGGPG--GPKGMQHFPPGPGGP-MPGPHGGPGGPVGPRLLGPPPPP-RGGDPFW 680
G PG GP G+ P G G P +PGP G G P LLG P G+P
Sbjct: 292 QGPSGAKGEPGTRGPPGLIG-PTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGE 350
Query: 681 DGP-------------GDPMRGGPM----RGGPGPGPG-PYHRGRGGRGGNEPPPPPPPF 722
GP G P R GP GPG PG P RG G G P P
Sbjct: 351 QGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGE 410
Query: 723 RGARGGRSGGGP------PNGRGGPGG-GMVGGGGHRPHEGPGG--GMGNSSGHRPHEGP 773
RG G GP P G PGG G+ G G + G G G+ SG +GP
Sbjct: 411 RGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGP 470
Query: 774 GGGMGSGHRPH------------EGPGGSMGGGGGHRPHEGPGG-GISGGSGHRPHEGPG 820
G +G P EG G G G P PG GI+G G GP
Sbjct: 471 AGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPP 530
Query: 821 GGMGA------GGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPH 857
G GA G H P+ G G++ G GG +P G G H
Sbjct: 531 GAPGAFDETGIAGLHLPNGGVEGAVLGKGG-KPQFGLGELSAH 572
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 116 bits (291), Expect = 9e-26
Identities = 132/399 (33%), Positives = 154/399 (38%), Gaps = 58/399 (14%)
Query: 539 PGGSG-GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMG-----SP 592
PG G P GA G + P + GS G P PG G + G P
Sbjct: 530 PGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGP 589
Query: 593 NSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMP 652
P E+ P S I+ GL PGP + PG PG G P G P
Sbjct: 590 LGAPGEDGRPGPPGSIGIRGQPGSMGL--PGPKGSSGDPGKPG-EAGNAGVPGQRGAPGK 646
Query: 653 GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGG 712
GP GPVGP P G+ GP P +G PGP PGP G GG+ G
Sbjct: 647 DGEVGPSGPVGP-------PGLAGERGEQGPPGPTG---FQGLPGP-PGP--PGEGGKPG 693
Query: 713 NEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVG----GGGHRPHEGPGGGMGNSSGH 767
++ P P G G R G P RG PG G+ G GGH P +GP G G SG
Sbjct: 694 DQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGP-DGPKGSPG-PSGT 751
Query: 768 RPHEGPGGGMG-SGHRPHEGPGGSMG--GGGGHRPHEGPGG--------------GISGG 810
GP G G G R G G G GG G + EG G G +G
Sbjct: 752 PGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGP 811
Query: 811 SGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVP 865
+G + GP G +G G G R GP G++G +G P PG G G P
Sbjct: 812 TGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGE-----P 866
Query: 866 GHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGG 904
G +G D P P G GP HG G G GG G
Sbjct: 867 GQKG-DAGSPGPQGLAGSPGP-HGPNGVPGLKGGRGTQG 903
Score = 114 bits (286), Expect = 3e-25
Identities = 142/406 (34%), Positives = 158/406 (38%), Gaps = 97/406 (23%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P GS G+P G+ G P G++G GPQGP G + G P +
Sbjct: 826 PPGSRGNP-GSRGENGPT------GAVGFA-GPQGPDGQ--------PGVKGEPGEPGQK 869
Query: 599 ELLKQPDYSDKIKQMLVPHGLLG-PGPIA-NGFP--PGGPG--GPKGMQHFPPGPG--GP 650
P P GL G PGP NG P GG G GP G FP G GP
Sbjct: 870 GDAGSPG----------PQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGP 919
Query: 651 MPGPHGGPGGPVGPRLLGPP----PPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRG 706
PGP G PG P GP LG P PP GDP G R G RG GP GP +G
Sbjct: 920 -PGPAGAPG-PAGP--LGEPGKEGPPGLRGDP-----GSHGRVGD-RGPAGPPGGPGDKG 969
Query: 707 RGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG--------GPGG--GMVGGGGHRPHEG 756
G G P PP G G R G P RG GP G G VG G +G
Sbjct: 970 DPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKG 1029
Query: 757 PGGGMGNSSGHRP-----HEGPGGGMGS----------GHRPHEGPG---GSMGGGGGHR 798
P G +G + P EGP G G+ G R GP GS G G
Sbjct: 1030 PPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPG 1089
Query: 799 PHEGPG-GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG--------GSGGHRPHE 849
P PG G G G R GP G G G P +GP G G G GHR
Sbjct: 1090 PVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGP-QGPRGDKGDHGDRGDRGQKGHRGFT 1148
Query: 850 G----PGHGGPHGHR-PHDVPGHRGHDHRGPP----PHEHRGHDGP 886
G PG GP+G + +PG G RGPP P G+ GP
Sbjct: 1149 GLQGLPGPPGPNGEQGSAGIPGPFG--PRGPPGPVGPSGKEGNPGP 1192
Score = 107 bits (266), Expect = 7e-23
Identities = 146/427 (34%), Positives = 174/427 (40%), Gaps = 77/427 (18%)
Query: 538 EPG------GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGG-GINVQEILTSIMG 590
EPG G G P AG PP G G KG GP G GI+ + + G
Sbjct: 117 EPGLVPVVTGIRGRPGPAG----PPGSQGPRGERGP-KGRPGPRGPQGIDGEPGVPGQPG 171
Query: 591 SPN-----SHPSEELLKQPDYSDKIKQMLVPHGL-----LGPGPIANGFPPGGPGGPKGM 640
+P SHP + L +P +S ++ + GL L PG + P GP GP+G+
Sbjct: 172 APGPPGHPSHPGPDGLSRP-FSAQMAGLDEKSGLGSQVGLMPGSVG----PVGPRGPQGL 226
Query: 641 --QHFPPGPGGPMPGPHGGPG--GPVGPRLLGPPPPP----RGGDPFWDG-PGD-PMRGG 690
Q GP GP PG G PG GP+G R GP PP G+P +G PG+ G
Sbjct: 227 QGQQGGAGPTGP-PGEPGDPGPMGPIGSR--GPEGPPGKPGEDGEPGRNGNPGEVGFAGS 283
Query: 691 P-MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGP--PNGRGGPGGGMVG 747
P RG PG P +G G G E P GA G + GP P G GP G G
Sbjct: 284 PGARGFPGAPGLPGLKGHRGHKGLEGPKGEV---GAPGSKGEAGPTGPMGAMGPLGPR-G 339
Query: 748 GGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGS-MGGGGGHRPHEGPGG- 805
G R GP G G H G G MG P PG S G G + GP G
Sbjct: 340 MPGERGRLGPQGAPGQRGAH-GMPGKPGPMG----PLGIPGSSGFPGNPGMKGEAGPTGA 394
Query: 806 -GISGGSGHRPHEGPGGGMGAGG--------GHRPHEGPGGSMGGSGGHRPHEGPGHGGP 856
G G G R GP G +G+ G G +GP GS G SG PG GP
Sbjct: 395 RGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGP 454
Query: 857 HGH--------RPHD--VPGHRGH-DHRGPP-PHEHRGHDGP--GHGGGGHRGHDGGHSH 902
G +P D VPG +G +G P PH +G GP G G RG G
Sbjct: 455 QGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGP 514
Query: 903 GGDMSNR 909
G + R
Sbjct: 515 PGPVGER 521
Score = 102 bits (255), Expect = 1e-21
Identities = 126/370 (34%), Positives = 139/370 (37%), Gaps = 68/370 (18%)
Query: 539 PGGSGGSPD--GAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G P G G++ PP GS G GP GP G + G P
Sbjct: 886 PHGPNGVPGLKGGRGTQGPPGATGFPGSAGR-VGPPGPAGAPGPAGPL-----GEPGKEG 939
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPH 655
L P HG +G GP PPGGPG KG PG G PGP
Sbjct: 940 PPGLRGDPG----------SHGRVGDRGPAG---PPGGPGD-KG----DPGEDG-QPGPD 980
Query: 656 G--GPGGPVGPRLLGPPPPPRG--GDPFWDGP-GDPMRGGPM-----RGGPGP-GP---- 700
G GP G G R + P RG G P GP G P + GP +G PGP GP
Sbjct: 981 GPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSN 1040
Query: 701 GPYHR-GRGGRGGNEPPPPPPPFRGARGGRSGGGP---PNGRGGPGG----GMVGGGGHR 752
GP G G GN+ P G RG R GP P +G PG G G G R
Sbjct: 1041 GPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQR 1100
Query: 753 PHEGPGGGMG--NSSGHRPHEGPGGGMGS----------GHRPHEGPGGSMGGGGGHRPH 800
G G +G +G R GP G G G + H G G G G P+
Sbjct: 1101 GDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPN 1160
Query: 801 EGPGG-GISGGSGHRPHEGPGGGMGAGGGHRPHE--GPGGSMGGSGGHRPHEGPGHGGPH 857
G GI G G R GP G G G P GP G G G P PG GP
Sbjct: 1161 GEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPP 1220
Query: 858 GHRPHDVPGH 867
G P PGH
Sbjct: 1221 G--PPGPPGH 1228
Score = 100 bits (248), Expect = 8e-21
Identities = 133/427 (31%), Positives = 160/427 (37%), Gaps = 75/427 (17%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMG--AGKGPQG----PGGGGINVQEILTSIMGSP 592
PG G P G+ G+ PP A GS G GPQG PG G+ + G P
Sbjct: 428 PGAKG--PTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEP 485
Query: 593 NSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--------GPKGMQ--H 642
H + + P K P + PGP+ PG G GPKG Q
Sbjct: 486 GPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGER 545
Query: 643 FPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRG--GDPFWDGPGDPMRGGPMRGGPG--- 697
P G GP G G PG P P L P RG G+P GP + GP+ G PG
Sbjct: 546 GPVGSSGPK-GSQGDPGRPGEPGL----PGARGLTGNPGVQGPEGKL--GPL-GAPGEDG 597
Query: 698 -PGPG--------PYHRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRGGPGG--G 744
PGP P G G G+ P P G G G+ G +G GP G G
Sbjct: 598 RPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVG 657
Query: 745 MVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG--GGGGHRPHEG 802
G G R +GP G G P PG G G + G G++G G G R + G
Sbjct: 658 PPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPG 717
Query: 803 PGG--GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGH------G 854
G GI+G G + G GG G G + GP G+ G +G PG
Sbjct: 718 ERGEPGITGLPGEK---GMAGGHGPDGP-KGSPGPSGTPGDTGPPGLQGMPGERGIAGTP 773
Query: 855 GPHGHR----PHDVPGHRGHDHR-------GPP----PHEHRGHDGPGH--GGGGHRGHD 897
GP G R G G+D GPP P +G GP G G RG+
Sbjct: 774 GPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNP 833
Query: 898 GGHSHGG 904
G G
Sbjct: 834 GSRGENG 840
Score = 94.7 bits (234), Expect = 3e-19
Identities = 145/450 (32%), Positives = 162/450 (36%), Gaps = 104/450 (23%)
Query: 541 GSGGSP--DGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
G G+P DG G P L G G +GP GP G + G P P
Sbjct: 639 GQRGAPGKDGEVGPSGPVGPPGLAGERGE-QGPPGPTG--------FQGLPGPPG--PPG 687
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPG-----GPKGMQ--HFPPGPGGP 650
E K D V G LGP G N G PG G KGM H P GP G
Sbjct: 688 EGGKPGDQGVPGDPGAV--GPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGS 745
Query: 651 MPGPHGGPGGPVGPRLLGPP--------PPPRG-----GDPFWDGPG--DPMRGGPMRGG 695
PGP G PG P L G P P P+G G+ +G D RG P G
Sbjct: 746 -PGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLG 804
Query: 696 PGPGP-GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGP-----------PNGRGGPGG 743
P PGP GP G G G PP RG G R GP P+G+ G G
Sbjct: 805 P-PGPAGP--TGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKG 861
Query: 744 --GMVGGGGHRPHEGPGGGMGNSSGHRPH-----------EGPGGGMG----SGHRPHEG 786
G G G GP G G+ H P+ +GP G G +G G
Sbjct: 862 EPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPG 921
Query: 787 PGGSMGGGG--GHRPHEGPGG-----GISGGSGHRPHEGPGGGMGAGG-----GHRPHEG 834
P G+ G G G EGP G G G G R GP GG G G G +G
Sbjct: 922 PAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDG 981
Query: 835 PGGSMGGSG--------GHRPHEG-PGHGGPHGHRPHDVPGHRGHDHRGPP--------- 876
P G G +G G R G PG GP G P V +GPP
Sbjct: 982 PPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAG-TPGKVGPTGATGDKGPPGPVGPPGSN 1040
Query: 877 -PHEHRGHDGPGHGGGGHRGHDGGHSHGGD 905
P G +GP G G G DG GD
Sbjct: 1041 GPVGEPGPEGPA-GNDGTPGRDGAVGERGD 1069
Score = 87.0 bits (214), Expect = 7e-17
Identities = 135/435 (31%), Positives = 151/435 (34%), Gaps = 82/435 (18%)
Query: 539 PGGSGGSPDGAGGSKLP--PVLANLMGSMGAGKGPQGPGGG-------GINVQEILTSIM 589
P G G GAG + P P MG +G+ +GP+GP G G N
Sbjct: 223 PQGLQGQQGGAGPTGPPGEPGDPGPMGPIGS-RGPEGPPGKPGEDGEPGRNGNPGEVGFA 281
Query: 590 GSPNSH--PSEELLKQPDYSDKIKQMLVPHGLLG-PGPIANGFPPG-----GPGGPKGMQ 641
GSP + P L K + P G +G PG P G GP GP+GM
Sbjct: 282 GSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGM- 340
Query: 642 HFPPGPGGPMPGPHGGPG-----------GPVGPRLLGPPPPPRGGDPFWDGPGDPMRGG 690
PG G + GP G PG GP+GP LG P G F PG G
Sbjct: 341 ---PGERGRL-GPQGAPGQRGAHGMPGKPGPMGP--LGIP----GSSGFPGNPGMKGEAG 390
Query: 691 PM--------------RGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPN 736
P G PGP P G G G P G G GPP
Sbjct: 391 PTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPG 450
Query: 737 GRGGPGGGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGS-GHRPHEGPGGSMGG 793
G G G G R G G G +G + GP G G G EG G G
Sbjct: 451 SPGPQGS--TGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGD 508
Query: 794 GGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRP--HEGPGGSMGGSGGHRPHE 849
G P GP G G G G +G G GA G P GP GS G G RP E
Sbjct: 509 PGTVGP-PGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPG--RPGE 565
Query: 850 -----------GPGHGGPHGH-RPHDVPGHRGHDHRGPPPH-EHRGHDGPGHGGGGHRGH 896
PG GP G P PG G GPP RG G G G +G
Sbjct: 566 PGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRP--GPPGSIGIRGQPG-SMGLPGPKGS 622
Query: 897 DGGHSHGGDMSNRPV 911
G G+ N V
Sbjct: 623 SGDPGKPGEAGNAGV 637
Score = 77.0 bits (188), Expect = 8e-14
Identities = 107/345 (31%), Positives = 122/345 (35%), Gaps = 100/345 (28%)
Query: 539 PGGSGGSPDGAG-----GSKLPPVLANLMGSMG--AGKGPQGPGGG-------------- 577
P G G+P AG G + PP L GS G +GP GP GG
Sbjct: 919 PPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPG 978
Query: 578 --------GINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLG----PGPI 625
G Q + + G L K+ P G G PGP+
Sbjct: 979 PDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVG----PTGATGDKGPPGPV 1034
Query: 626 ANGFPPG--------GPGGPKGMQHFP--------------PGPGGPMPGPHGGPG--GP 661
PPG GP GP G P PGP G +PG G PG GP
Sbjct: 1035 G---PPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAG-LPGSQGAPGTPGP 1090
Query: 662 VGPRLLGPPPPPRGGDPFWDGP-GDPMRGGPMRGGPGP----GPGPYHRGRGGRG----- 711
VG P + GDP GP G P R G RG PGP G H RG RG
Sbjct: 1091 VG----APGDAGQRGDPGSRGPIGPPGRAGK-RGLPGPQGPRGDKGDHGDRGDRGQKGHR 1145
Query: 712 ---GNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHR 768
G + P PP G +G GP RG PG VG G + GP G +G
Sbjct: 1146 GFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGP--VGPSGKEGNPGPLGPIG------ 1197
Query: 769 PHEGPGGGMGS-GHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSG 812
P G GS G EGP G G G GP G ++ G
Sbjct: 1198 ----PPGVRGSVGEAGPEGPPGEPGPPG----PPGPPGHLTAALG 1234
Score = 70.5 bits (171), Expect = 7e-12
Identities = 72/226 (31%), Positives = 80/226 (35%), Gaps = 28/226 (12%)
Query: 698 PGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGP 757
PG G + GRG +G P P G RG GPP G GP G G + GP
Sbjct: 100 PGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPP-GSQGPRGER----GPKGRPGP 154
Query: 758 GGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHE 817
G G PG GH H GP G RP G+ SG
Sbjct: 155 RGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLS------RPFSAQMAGLDEKSGLGSQV 208
Query: 818 GPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHG-------HRPHDVPGHRGH 870
G G G R +G G GG+G P PG GP G P PG G
Sbjct: 209 GLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGE 268
Query: 871 DHRGPPPHE--------HRGHDG-PGHGG-GGHRGHDGGHSHGGDM 906
R P E RG G PG G GHRGH G G++
Sbjct: 269 PGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEV 314
Score = 56.6 bits (135), Expect = 1e-07
Identities = 87/267 (32%), Positives = 100/267 (37%), Gaps = 65/267 (24%)
Query: 539 PGGSGGS--PDGAGGSKLPPVLANLMGSMG--AGKGPQGPGGGGINVQEILTSIMGSPNS 594
P G+ G P GA G K PP GS G GP+GP G G+P
Sbjct: 1012 PAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGND-----------GTPGR 1060
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLG-------PGPIANGFP--------PG--GPGGP 637
+ + ++ D D P GL G PGP+ G P PG GP GP
Sbjct: 1061 DGA--VGERGDRGDP-----GPAGLPGSQGAPGTPGPV--GAPGDAGQRGDPGSRGPIGP 1111
Query: 638 KGM--QHFPPGPGGPM--PGPHGGPG--GPVGPR----LLGPPPPPRGGDPFWDGPGDPM 687
G + PGP GP G HG G G G R L G P PP G + G P
Sbjct: 1112 PGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPP-GPNGEQGSAGIPG 1170
Query: 688 RGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMV 746
GP RG PGP G G+ GN P P G RG GP G PG G
Sbjct: 1171 PFGP-RGPPGPV------GPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPP 1223
Query: 747 GGGGHRPHEGPGGGMGNSSGHRPHEGP 773
G GH +G+ GH P
Sbjct: 1224 GPPGHLT-----AALGDIMGHYDESMP 1245
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 115 bits (287), Expect = 2e-25
Identities = 142/433 (32%), Positives = 153/433 (35%), Gaps = 116/433 (26%)
Query: 539 PGGSGGSP--DGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G P DG G+K P A G G GP GP G + + G+P +
Sbjct: 810 PAGFAGPPGADGQPGAKGEPGDAGAKGDAGP-PGPAGPAGPPGPIGNV-----GAPGAKG 863
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPG----GPGGPKGMQHFPPGPGGPMP 652
+ G GP P A GFP GP GP G PPGP GP
Sbjct: 864 AR-------------------GSAGP-PGATGFPGAAGRVGPPGPSGNAG-PPGPPGPA- 901
Query: 653 GPHGGPG-----GPVG-PRLLGPPPPP----RGGDPFWDGP-GDPMRGGPM--------- 692
G GG G GP G P +GPP PP G P DGP G P GP
Sbjct: 902 GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV 961
Query: 693 --------RGGPG-PGPG--PYHRGRGGRGGNEPPPPP--PPFRGARGGRSGG-GPPNGR 738
RG PG PGP P +G G G PP P PP G SG G P
Sbjct: 962 GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE 1021
Query: 739 GGPG-GGMVGGGGHRPHEGPGG--------------GMGNSSGHRPHEGPGGGMGS---- 779
G PG G G G R GP G G SG R GP G G
Sbjct: 1022 GSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPV 1081
Query: 780 GHRPHEGPGGSMGGGG-----------GHRPHEG-------PGG----GISGGSGHRPHE 817
G R GP G G G GHR G PG G SG SG
Sbjct: 1082 GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR 1141
Query: 818 GPGGGMGAGG-----GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDH 872
GP G GA G G GP G G +G P PG GP G P P
Sbjct: 1142 GPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPG--PPGPPSAGFDFS 1199
Query: 873 RGPPPHEHRGHDG 885
P P + + HDG
Sbjct: 1200 FLPQPPQEKAHDG 1212
Score = 112 bits (279), Expect = 2e-24
Identities = 137/429 (31%), Positives = 153/429 (35%), Gaps = 83/429 (19%)
Query: 539 PGGSGGSPDGAG--GSKLPPVLANLMGSMGA----GK-GPQGPGGGGINVQEILTSIMGS 591
P G GSP AG G P L GS G+ GK GP GP G Q+ G
Sbjct: 516 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAG-----QDGRPGPPGP 570
Query: 592 PNSHPSEELLKQPDYSDKIKQMLVPHGLLG-PGPIANGFPPGGPG--GPKGMQ-----HF 643
P + ++ P P G G PG PG PG GP G
Sbjct: 571 PGARGQAGVMGFPG----------PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG 620
Query: 644 PPGPGGPMP--GPHGGPGGPVGPRLLGPPPPP-RGGDPFWDG-PGDPMRGGPMRGGPGPG 699
PPGP GP G G G P L GP PP G P G PGD G PGP
Sbjct: 621 PPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGD-------LGAPGPS 673
Query: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHR--PHEG 756
RG G G + PP P RGA G G G PG G G G + P E
Sbjct: 674 GARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGER 733
Query: 757 PGGGMGNSSGHRPHEGPGGGMGS----GHRPHEGPGGSMG--GGGGHRPHEGPGG----- 805
G+ G R GP G GS G R GP G G G G + GP G
Sbjct: 734 GAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPT 793
Query: 806 GISGGSGHRPHEGPGGGMGAGG--------GHRPHEGPGGSMGGSGGHRPHEGPGHGGPH 857
G G G R GP G G G G + G G+ G +G P G GP
Sbjct: 794 GARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853
Query: 858 GH-------------RPHDVPGHRGHDHR-GPP-PHEHRGHDGP-----GHGGGGHRGHD 897
G+ P G G R GPP P + G GP GG G RG
Sbjct: 854 GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET 913
Query: 898 GGHSHGGDM 906
G G++
Sbjct: 914 GPAGRPGEV 922
Score = 109 bits (273), Expect = 1e-23
Identities = 119/348 (34%), Positives = 134/348 (38%), Gaps = 72/348 (20%)
Query: 618 GLLGPGPIANGFPPGGPGGPKGMQHFP-----PGPGGPMPGPHGGPG------------- 659
G+ GP P GP GP G P PGP GP PGP G PG
Sbjct: 109 GVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGP-PGPPGPPGLGGNFAPQLSYGY 167
Query: 660 --------------GPVGPR-LLGPP--PPPRGGDPFWDGPGDPMRGGPM--RGGPGPGP 700
GP GPR L GPP P P+G PG+P GPM RG PGP P
Sbjct: 168 DEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGP-P 226
Query: 701 GPY----HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVGGGGHRPHE 755
G G+ GR G PP P +GARG G P +G G G+ G G
Sbjct: 227 GKNGDDGEAGKPGRPGERGPPGP---QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPA 283
Query: 756 GPGG--GMGNSSGHRPHEGPGGGMGSGHRP-HEGPGGSMG-----GGGGHRPHEGPGG-- 805
GP G G +G GP G G RP GP G+ G G G GP G
Sbjct: 284 GPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343
Query: 806 GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHR-PH 862
G G G + GP G G+ G G R GP G G +G P PG G G + +
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAG---PAGNPGADGQPGAKGAN 400
Query: 863 DVPGHRGHDHRGPPPHEHRGHDGPGHGGG-----GHRGHDGGHSHGGD 905
PG G P RG GP GG G+ G G GD
Sbjct: 401 GAPGIAG----APGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGD 444
Score = 109 bits (273), Expect = 1e-23
Identities = 129/405 (31%), Positives = 145/405 (35%), Gaps = 96/405 (23%)
Query: 540 GGSGGS-PDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
G +G + P G G PP +G+ G GPQGP G E + G P
Sbjct: 326 GATGAAGPPGPTGPAGPPGFPGAVGAKGEA-GPQGPRGS-----EGPQGVRGEPGP---- 375
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG-----GPKGMQHFPPGPGGP-MP 652
PGP P G PG G KG P G P P
Sbjct: 376 -----------------------PGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFP 412
Query: 653 GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGG 712
G G P GP GP G PP P+G G+P G PG +G G G
Sbjct: 413 GARG-PSGPQGP---GGPPGPKGNS------GEP-------GAPGSKGDTGAKGEPGPVG 455
Query: 713 NEPPPPPPPFRGARGGRSG------GGPPNGRGGPG----------GGMVGGGGHRPHEG 756
+ PP P G RG R GPP RGGPG G G G R G
Sbjct: 456 VQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPG 515
Query: 757 PGGGMGN-SSGHRPHEG--PGGGMGSGHRPHEGPGGSMG--GGGGHRPHEGPGG--GISG 809
P G G+ RP E PG +G GP G G G G GP G G G
Sbjct: 516 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARG 575
Query: 810 GSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMG--GSGGHRPHEG-PGHGGPHGHR---- 860
+G GP G G G G R GP G++G G G +G PG GP G R
Sbjct: 576 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG 635
Query: 861 PHDVPGHRGHDHRGPPPHE--HRGHDG-PGH----GGGGHRGHDG 898
P PG +G PP E G G PG G G RG G
Sbjct: 636 PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 680
Score = 99.0 bits (245), Expect = 2e-20
Identities = 140/472 (29%), Positives = 164/472 (34%), Gaps = 131/472 (27%)
Query: 541 GSGGSPDGAGGSKLPPVLANLMGSMGAG--KGPQGP-GGGGINVQEILTSIMGSPNSHPS 597
G G+P GA GS+ P L + G GA GP+G G G + GSP
Sbjct: 710 GDAGAP-GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGAD------GSPGK--- 759
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGPGPIANGFP-------PGGPGGPKGMQHFP-----P 645
D ++ + P G GP G P P GP GP G + P P
Sbjct: 760 ----------DGVRGLTGPIGPPGPA----GAPGDKGESGPSGPAGPTGARGAPGDRGEP 805
Query: 646 GPGGPM-----PGPHGGPG-----GPVGPRLLGPPPPPRGGDPFWDGPGDPMR--GGP-- 691
GP GP PG G PG G G + PP P G GP P+ G P
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPA----GPPGPIGNVGAPGA 861
Query: 692 --MRGGPGPGPGPYHRGRGGR-------GGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
RG GP G GR G PP PP P G+ GG P G GP
Sbjct: 862 KGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGP-----AGKEGGKGPRGETGPA 916
Query: 743 G-----------GMVGGGGHRPHEGPGGGMGNS-----SGHRPHEGPGGGMGS-GHRPHE 785
G G G G +GP G G +G R G G G G
Sbjct: 917 GRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLP 976
Query: 786 GPGGSMG-----GGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGG--------GHR 830
GP G G G G R GP G G++G G EG G G+ G G R
Sbjct: 977 GPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDR 1036
Query: 831 PHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGP--GH 888
GP G G G PG GP G P G RG P G GP
Sbjct: 1037 GETGPAGPPGAPG------APGAPGPVG--PAGKSGDRGETGPAGP----AGPVGPVGAR 1084
Query: 889 GGGGHRGHDGGHSHGGDMSNRPVCRHFMMKGNCRYENNCAFYHPGVNGPPLP 940
G G +G G G+ +R + KG+ + G+ GPP P
Sbjct: 1085 GPAGPQGPRGDKGETGEQGDRGI------KGHRGFS--------GLQGPPGP 1122
Score = 71.6 bits (174), Expect = 3e-12
Identities = 75/234 (32%), Positives = 82/234 (35%), Gaps = 43/234 (18%)
Query: 538 EPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
EPG G P GA G + PP MG G GP G G +E GSP S
Sbjct: 981 EPGKQG--PSGASGERGPP---GPMGPPGLA-GPPGESG-----REGAPGAEGSPGRDGS 1029
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHG- 656
+ P PGP+ P G G +G + P GP GP+ GP G
Sbjct: 1030 PGAKGDRGETGPAGPPGAPGAPGAPGPVG----PAGKSGDRG-ETGPAGPAGPV-GPVGA 1083
Query: 657 -GPGGPVGPR----------------------LLGPPPPPRGGDPFWDGPGDPMRGGPMR 693
GP GP GPR L GPP PP G P GP R
Sbjct: 1084 RGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPP--GSPGEQGPSGASGPAGPR 1141
Query: 694 GGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVG 747
G PG P G G G PP P G G GPP G PG G
Sbjct: 1142 GPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 115 bits (287), Expect = 2e-25
Identities = 157/532 (29%), Positives = 195/532 (36%), Gaps = 116/532 (21%)
Query: 433 AKREILSDRHA---FETARRLSHDNMEEKVPWVCPRPLVLPSPLVTPGSNSQERYIQAER 489
A E+L+DR E ++ + +E P +L + + Q IQ
Sbjct: 517 APNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQYTNPQLLEQLKIERLAQKQVEQIQPPP 576
Query: 490 EKG--ILQELFLNKESPHEPDPEPYE-PIPPKLIPLDEECSMDETPYVETLEPGGSGGSP 546
G +L + P P+ ++ P P + +P++ P + PG P
Sbjct: 577 SSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPG-----P 631
Query: 547 DGAGGSKLPPVLANLMGSMG--AGKGPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQP 604
G G + PP+ G G +GPQGP G Q++ H + + + P
Sbjct: 632 QGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDM----------HGPQGMQRHP 681
Query: 605 DYSDKIKQMLVPHGLLGP----GPIANGFPPG--GPGGPKGMQ-HFPPGPGGPMPGPHG- 656
PHG LGP GP + P G GP GP G Q H GP GP PGP G
Sbjct: 682 G----------PHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHI--GPQGP-PGPQGH 728
Query: 657 -GPGGPVGPRLLGPPPPPRG-----------GDPFWDGPGDPMRGGP--------MRGGP 696
GP GP G + + PP PRG G P G P+ GP M+G P
Sbjct: 729 LGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPP 788
Query: 697 GP----GP---------------GPYHRG----------RGG---RGGNEPPP------P 718
GP GP GP+ G RG RG PPP P
Sbjct: 789 GPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGP 848
Query: 719 PPPFRGARGGRSGGGPPNGRGG--PGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGG 776
P RG G +S GPP G G P GGM G G + + P G S G P +
Sbjct: 849 PQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTP 908
Query: 777 -MGSGHR-PHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEG 834
+G G R P G S G P PG G G G P PG G G G G
Sbjct: 909 LLGDGPRAPFNQEGQSTG-----PPPLIPGLGQQGAQGRIPPLNPGQGPGPNKG--DSRG 961
Query: 835 PGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGP 886
P G R HE GGP H P P G D RGPP D P
Sbjct: 962 PPNHHMGPMSERRHE--QSGGPE-HGPERGPFRGGQDCRGPPDRRGPHPDFP 1010
Score = 74.7 bits (182), Expect = 4e-13
Identities = 76/225 (33%), Positives = 86/225 (38%), Gaps = 37/225 (16%)
Query: 671 PPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPP-PFRGARGGR 729
PPP G P GP P PG + +G +P P P A+ G
Sbjct: 574 PPPSSGTPLL--------------GPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGP 619
Query: 730 SGGGPPNGRGGPGG--GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGP 787
G P G+ P G G +G G H+G GG G P +GP G+ H GP
Sbjct: 620 PG---PQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGP-QGPPQGLPRPQDMH-GP 674
Query: 788 GGSMGGGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGH 845
G G H P GP G G G SG + H GP G G G H GP G G G
Sbjct: 675 QGMQRHPGPHGPL-GPQGPPGPQGSSGPQGHMGPQGPPGPQG----HIGPQGPPGPQGHL 729
Query: 846 RPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGG 890
P PG G G PG RG PPH H GPG G
Sbjct: 730 GPQGPPGTQGMQGP-----PGPRGMQG---PPHPHGIQGGPGSQG 766
Score = 72.0 bits (175), Expect = 2e-12
Identities = 135/485 (27%), Positives = 151/485 (31%), Gaps = 134/485 (27%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P GS G P GG + PP G +GP P G I Q+ T ++G P
Sbjct: 865 PQGSLGPPP-QGGMQGPP---GPQGQQNPARGPH-PSQGPIPFQQQKTPLLGDGPRAPFN 919
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPP----GP------- 647
+ Q + L G G P N P GPG KG PP GP
Sbjct: 920 QE-GQSTGPPPLIPGLGQQGAQGRIPPLN--PGQGPGPNKGDSRGPPNHHMGPMSERRHE 976
Query: 648 --GGPMPGPHGGPGGPVGPRLLGPP----PPPRGGDPFWDGPGD--------------PM 687
GGP GP GP G GPP P P D F P D
Sbjct: 977 QSGGPEHGPERGPFRG-GQDCRGPPDRRGPHPDFPDDF-SRPDDFHPDKRFGHRLREFEG 1034
Query: 688 RGGPM-------RGGPGPGPGPYHR------GRGGRGGNEPP----------------PP 718
RGGP+ RGGPGP P HR GRG G PP P
Sbjct: 1035 RGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARG--PPGAWEGRRPGDERFPRDPE 1092
Query: 719 PPPFRGARGG---------RSGGGPPNGRGG-PGGGMVGGGGH--------RPHEGPGGG 760
P FRG R G PP GR G PG G + R + G G
Sbjct: 1093 DPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASEEAARGRDLRGRG 1152
Query: 761 MGNSSGHR------PHEGPGGGMGSGHRPHEGPGGSMGGGG----------GHRPHEG-- 802
G G R P E P G +P G G G H PH+G
Sbjct: 1153 RGTPRGGRKGLLPTPDEFPR--FEGGRKPDSWDGNREPGPGHEHFRDTPRPDHPPHDGHS 1210
Query: 803 -----------------------PGGGISGGSGHRPHEGPGG-GMGAGGGHRPHEGPGGS 838
P G S HR E PGG GG R GP
Sbjct: 1211 PASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRGGKGRGGPGPAQR 1270
Query: 839 MGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDG 898
+ SG +G H G H P P G RG + G + G RG
Sbjct: 1271 VPKSGRSSSLDGEHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASR 1330
Query: 899 GHSHG 903
G G
Sbjct: 1331 GGGRG 1335
Score = 45.1 bits (105), Expect = 3e-04
Identities = 58/185 (31%), Positives = 66/185 (35%), Gaps = 27/185 (14%)
Query: 635 GGPKGM----QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDG--PGDPMR 688
GG KG+ FP GG P G P GP PR P DG P R
Sbjct: 1158 GGRKGLLPTPDEFPRFEGGRKPDSWDGNREP-GPGHEHFRDTPRPDHPPHDGHSPASRER 1216
Query: 689 GGPMRG----GPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGP-------PNG 737
++G P P+H G G E P P RGG+ GGP +G
Sbjct: 1217 SSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSED-RGGKGRGGPGPAQRVPKSG 1275
Query: 738 RGGPGGGMVGGGGHR--PHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPG--GSMGG 793
R G G HR P GP G S G R G G G + GP G+ G
Sbjct: 1276 RSSSLDGEHHDGYHRDEPFGGPPGSGTPSRGGRS----GSNWGRGSNMNSGPPRRGASRG 1331
Query: 794 GGGHR 798
GG R
Sbjct: 1332 GGRGR 1336
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 114 bits (286), Expect = 3e-25
Identities = 152/459 (33%), Positives = 174/459 (37%), Gaps = 97/459 (21%)
Query: 539 PGGSGGSPD-GAGGSKLPPVLANLMGSMG--AGKGPQGPGGGGINVQEILTSIMGSPNSH 595
PG +G + D G G+ P A GS G GP GP G G P +
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPA-----GAAGQPGAK 738
Query: 596 PSEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPG-----GPGGPKGMQHFPPGPG- 648
E K P + + P G GP GP NG PPG G GGP GM FP G
Sbjct: 739 -GERGAKGPKGENGVVGPTGPVGAAGPAGP--NG-PPGPAGSRGDGGPPGMTGFPGAAGR 794
Query: 649 -GPMPGPHG--GPGGPVGPR----LLGPP----PPPRGGDPFWDGP----------GDPM 687
GP PGP G GP GP GP L GP P R G+ GP G+
Sbjct: 795 TGP-PGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAG 853
Query: 688 RGGPMRGGPGP-----GPG----PYHRGRGGRGG-----NEPPP-----------PP--- 719
GP G PGP PG P RG G G EP P PP
Sbjct: 854 TAGPP-GTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAV 912
Query: 720 --PPFRGARGGRSGGGPPNGRGGPG-GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGG 776
P GA G G P G PG G G G R + G G +G + PH GP G
Sbjct: 913 GSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPH-GPVGP 971
Query: 777 MGS-GHRPHEGPGGSMGGGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGG------ 827
G G+R GP G +G G P GP G GI G G +GP G G G
Sbjct: 972 AGKHGNRGETGPSGPVGPAGAVGP-RGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQG 1030
Query: 828 -----GHRPHEGPGGSMGGSGGHRP--HEGP-GHGGPHGH----RPHDVPGHRGHDHRGP 875
GH +G GS+G +G P GP G G GH P + G +GH
Sbjct: 1031 LPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAG 1090
Query: 876 PPHEHRGHDGPGHGGGGHR-GHDGGHSHGGDMSNRPVCR 913
PP PG GGG+ G+DG + P R
Sbjct: 1091 PPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLR 1129
Score = 100 bits (250), Expect = 5e-21
Identities = 124/396 (31%), Positives = 145/396 (36%), Gaps = 71/396 (17%)
Query: 539 PGGSGG-SPDGAGGSKLPPVLANLMGSMG--AGKGPQG-PGGGGINVQEILTSIMGSPNS 594
PG G P G G++ P G++G KGP G PG G L G+P
Sbjct: 471 PGIDGRPGPIGPAGARGEP------GNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPG- 523
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPM--- 651
PD ++ + G GP + G GP GP G Q P GP GP
Sbjct: 524 ---------PDGNNGAQ------GPPGPQGVQGGKGEQGPPGPPGFQGLP-GPSGPAGEV 567
Query: 652 --PGPHG--------GPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPG 701
PG G GP GP G R GPP G+ GP P+ G PGP
Sbjct: 568 GKPGERGLHGEFGLPGPAGPRGER--GPP-----GESGAAGPTGPIGSRGPSGPPGPDGN 620
Query: 702 PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG----GGMVGGGGHRPHEGP 757
G G G P P G RG G P G+G G G +G G G
Sbjct: 621 KGEPGVVGAVGTAGPSGPSGLPGERGA---AGIPGGKGEKGEPGLRGEIGNPGRDGARGA 677
Query: 758 GGGMGNSSGHRPHEGPGGGMGS-GHRPHEGPGGSMG--GGGGHRPHEGPGG--GISGGSG 812
G +G GP G G G GP G G G G R GP G G +G +G
Sbjct: 678 PGAVG-------APGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730
Query: 813 HRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGH-RPHDVPGHRG 869
G G GA G G GP G +G +G P+ PG G G P + G G
Sbjct: 731 AAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPG 790
Query: 870 HDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGGD 905
R PP G GP G G G +G GD
Sbjct: 791 AAGRTGPPGP-SGISGP-PGPPGPAGKEGLRGPRGD 824
Score = 100 bits (248), Expect = 8e-21
Identities = 134/418 (32%), Positives = 156/418 (37%), Gaps = 64/418 (15%)
Query: 532 PYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGS 591
P E EPG +G P GA G PP A G G P PG G+ + G+
Sbjct: 116 PAGEPGEPGQTG--PAGARGPAGPPGKAGEDGHPGK---PGRPGERGVVGPQGARGFPGT 170
Query: 592 PNSHPSEELLKQPDYSDKIKQMLVPHGLLG-PG-PIANGFPPGGPGGPKGMQHFPPGPGG 649
P P + ++ + D +K G+ G PG P NG P G G +G+ PG G
Sbjct: 171 PGL-PGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTP--GQTGARGL----PGERG 223
Query: 650 PM--PGPHG--------GPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPG 699
+ PGP G GP GP GP +G PP G P GP + G GP
Sbjct: 224 RVGAPGPAGARGSDGSVGPVGPAGP--IGSAGPP--GFPGAPGPKGEIGAVGNAGPAGPA 279
Query: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-------------GGMV 746
G G G PP P G G + G P G PG G
Sbjct: 280 GPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGAT 339
Query: 747 GGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMG----SGHRPHEGPGGSMGGGGGHRP--- 799
G G GP G G SG++ G G G SG GP G G G P
Sbjct: 340 GARGLVGEPGPAGSKG-ESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGL 398
Query: 800 HEGPGG-GISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSG--GHRPHEG-PGH 853
PG G+ G G GP G GA G G R G G G G G R G PG+
Sbjct: 399 RGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGN 458
Query: 854 GGPHGHR-PHDVPGHRGHDHRGP-PPHEHRGHDG----PG-HGGGGHRGHDGGHSHGG 904
GP G P +PG G GP P RG G PG G G G +G H G
Sbjct: 459 IGPAGKEGPVGLPGIDGRP--GPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAG 514
Score = 96.3 bits (238), Expect = 1e-19
Identities = 133/454 (29%), Positives = 158/454 (34%), Gaps = 99/454 (21%)
Query: 541 GSGGS-----PDGAGGSKLPPVLANLMGSMG-----AGKGPQGPGG--GGINVQEILTSI 588
GS GS P G GS PP G G GP GP G G + + + +
Sbjct: 235 GSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPV 294
Query: 589 MGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPG--------GPGG 636
P +P L + + + GL GP GP+ G GP G
Sbjct: 295 --GPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAG 352
Query: 637 PKGMQ--HFPPGPGGPM--PGPHG-----GPGGPVGPRLLGPPPPP--RGGDPFWDGPGD 685
KG PG GP PGP G GP G G GPP PP RG PG
Sbjct: 353 SKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSA--GPPGPPGLRGSPGSRGLPGA 410
Query: 686 PMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRGGPGG 743
R G M G PG G G G+ P P G RG G G P G+ GP G
Sbjct: 411 DGRAGVM-GPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVG 469
Query: 744 --------GMVGGGGHRPHEG------PGGGMGN--SSGHRPHEGPGGGMGS----GHRP 783
G +G G R G P G G+ +G + H G G G+ G+
Sbjct: 470 LPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNG 529
Query: 784 HEGPGGSMG--GGGGHRPHEGPGG--------------------------GISGGSGHRP 815
+GP G G GG G + GP G G+ G +G R
Sbjct: 530 AQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRG 589
Query: 816 HEGPGGGMGAGG-----GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGH 870
GP G GA G G R GP G G G G GP G P +PG RG
Sbjct: 590 ERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSG--PSGLPGERG- 646
Query: 871 DHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGG 904
G P + + G G+ G DG G
Sbjct: 647 -AAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPG 679
Score = 95.9 bits (237), Expect = 2e-19
Identities = 90/249 (36%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 631 PGGPGGPKGMQHFPPGPGGPMPGPHG--GPGGPVGPRLLGPPPPPRGGDPF---WDGPGD 685
P G GP+G + PPGP PG G GP GP GP GPP PP G F +DG G
Sbjct: 34 PAGDRGPRG-ERGPPGP----PGRDGEDGPTGPPGPP--GPPGPPGLGGNFAAQYDGKGV 86
Query: 686 PMRGGPM-----RGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGG 740
+ GPM RG PG P +G G G P P G G R GPP G+ G
Sbjct: 87 GLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGE---PGEPGQTGPAGARGPAGPP-GKAG 142
Query: 741 PGG--GMVGGGGHRPHEGPGG--------GMGNSSGHRPHEGPGGGMGSGHRPH-EGPGG 789
G G G G R GP G G+ G R H G G G P +G G
Sbjct: 143 EDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPG 202
Query: 790 SMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHE 849
+ G G P + G+ G G GP G G+ G P GP G +G +G P
Sbjct: 203 APGENG--TPGQTGARGLPGERGRVGAPGPAGARGSDGSVGP-VGPAGPIGSAG---PPG 256
Query: 850 GPGHGGPHG 858
PG GP G
Sbjct: 257 FPGAPGPKG 265
Score = 88.6 bits (218), Expect = 3e-17
Identities = 105/337 (31%), Positives = 120/337 (35%), Gaps = 57/337 (16%)
Query: 620 LGPGPIANGFPPGGPG-----GPKGMQHFPPGPGGP-MPGPHG--GPGGPVGPRLLG--P 669
LGPGP+ P G PG GP+G Q PG P GP G GP GP G P
Sbjct: 88 LGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHP 147
Query: 670 PPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR 729
P R G+ GP RG P G PG RG G G + P P +G G
Sbjct: 148 GKPGRPGERGVVGP-QGARGFP--GTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAP 204
Query: 730 SGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRP----HE 785
G P G G+ G G GP G G+ P GP G +GS P
Sbjct: 205 GENGTPGQTG--ARGLPGERGRVGAPGPAGARGSDGSVGP-VGPAGPIGSAGPPGFPGAP 261
Query: 786 GPGGSMGGGGGHRPHEGPGG--------GISGGSGHRPHEGPGGGMGAGG---------- 827
GP G +G G P GP G G+SG G + G G GA G
Sbjct: 262 GPKGEIGAVGNAGP-AGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGA 320
Query: 828 ----GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHR----------PHDVPGHRGHDHR 873
G R GP G+ G +G PG G G P PG G + +
Sbjct: 321 PGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGK 380
Query: 874 GPPPHEHRGHDGPG----HGGGGHRGHDGGHSHGGDM 906
P E PG G G RG G G M
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVM 417
Score = 87.8 bits (216), Expect = 4e-17
Identities = 89/264 (33%), Positives = 106/264 (40%), Gaps = 44/264 (16%)
Query: 623 GPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGP---RLLGPPPPPRG---- 675
GP PPG PG PPG GG + G G +GP L+GP PP
Sbjct: 57 GPTGPPGPPGPPG--------PPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAP 108
Query: 676 GDPFWDGP-GDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGP 734
G + GP G+P G P + GP GP G G+ G + P P G G R GP
Sbjct: 109 GPQGFQGPAGEP--GEPGQTGPAGARGP--AGPPGKAGEDGHPGKP---GRPGERGVVGP 161
Query: 735 PNGRGGPG-GGMVGGGGHRPHEGPGG--------GMGNSSGHRPHEGPGGGMGSGHRPHE 785
RG PG G+ G G R H G G G+ G G G G+ P E
Sbjct: 162 QGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGE 221
Query: 786 -------GPGGSMGGGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRP--HEG 834
GP G+ G G P GP G G +G G GP G +GA G P G
Sbjct: 222 RGRVGAPGPAGARGSDGSVGP-VGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAG 280
Query: 835 PGGSMGGSGGHRPHEGPGHGGPHG 858
P G +G G P PG+ G +G
Sbjct: 281 PRGEVGLPGLSGPVGPPGNPGANG 304
Score = 71.2 bits (173), Expect = 4e-12
Identities = 74/221 (33%), Positives = 86/221 (38%), Gaps = 39/221 (17%)
Query: 692 MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGH 751
+R GP GP RG RG PP PP R G +G PP G PG +GG
Sbjct: 30 VRKGPAGDRGP----RGERG-----PPGPPGRDGEDGPTG--PPGPPGPPGPPGLGGNFA 78
Query: 752 RPHEGPGGGMG-NSSGHRPHEGPGGGMGS-GHRPHEGPGGSMG--GGGGHRPHEGPGG-- 805
++G G G+G G GP G G+ G + +GP G G G G GP G
Sbjct: 79 AQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPP 138
Query: 806 GISGGSGH-----RPHE----GPGGGMGAGG-----------GHRPHEGPGGSMGGSGGH 845
G +G GH RP E GP G G G GH +G G G G
Sbjct: 139 GKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVK 198
Query: 846 RPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPPPHEHRGHDG 885
PG G G +PG RG P P RG DG
Sbjct: 199 GEPGAPGENGTPGQTGARGLPGERGR-VGAPGPAGARGSDG 238
Score = 50.8 bits (120), Expect = 6e-06
Identities = 60/191 (31%), Positives = 71/191 (37%), Gaps = 21/191 (10%)
Query: 530 ETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGG----GINVQEIL 585
E Y + P G+ G+P G G P G G GP GP G G + + +
Sbjct: 947 ERGYPGNIGPVGAAGAP-GPHGPVGPAGKHGNRGETGPS-GPVGPAGAVGPRGPSGPQGI 1004
Query: 586 TSIMGSPNSHPSEEL--LKQPDYSDKIKQMLVPHGLLG-PGPIANGFP--PGGPGGPKGM 640
G P L LK + + + HG G PG + P P GP GP G
Sbjct: 1005 RGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGK 1064
Query: 641 QHFPPGPG--GPM----PGPHGGPGGPVGPRLLGPPPPP--RGGDPFWDGPGDPMRGGPM 692
PG GP P H GP GP GP GPP PP GG + GD R
Sbjct: 1065 DGRTGHPGTVGPAGIRGPQGHQGPAGPPGPP--GPPGPPGVSGGGYDFGYDGDFYRADQP 1122
Query: 693 RGGPGPGPGPY 703
R P P Y
Sbjct: 1123 RSAPSLRPKDY 1133
Score = 46.6 bits (109), Expect = 1e-04
Identities = 45/137 (32%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 771 EGPGGGMGS-GHRPHEGPGGSMGGGGGHRPHEGPGG-GISGGSGHRPHEGPGGGMGAGGG 828
+GP G G G R GP G G G P PG G G G+ + G G+G G G
Sbjct: 32 KGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPG 91
Query: 829 HRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGH 888
GP G G +G P G G G PG G P RG GP
Sbjct: 92 PMGLMGPRGPPGAAGAPGPQGFQGPAGEPGE-----PGQTG-------PAGARGPAGP-P 138
Query: 889 GGGGHRGHDGGHSHGGD 905
G G GH G G+
Sbjct: 139 GKAGEDGHPGKPGRPGE 155
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 112 bits (280), Expect = 2e-24
Identities = 136/421 (32%), Positives = 156/421 (37%), Gaps = 86/421 (20%)
Query: 539 PGGSGGS-PDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
PG G S P G G+K V++ + G G +GP GP G G P SH
Sbjct: 541 PGKHGASGPPGNKGAKGDMVVSRVKGHKGE-RGPDGPPG-----------FPGQPGSHGR 588
Query: 598 EELLKQP-------DYSDKIKQMLVPHGLLGPGPIANGFPPG--GPGGPKGMQHFPPGPG 648
+ + D+ D P G PGP+ PPG GP GP G+ PGP
Sbjct: 589 DGHAGEKGDPGPPGDHEDA-----TPGGKGFPGPLG---PPGKAGPVGPPGLGF--PGP- 637
Query: 649 GPMPGPHGGPGGPVGPRLLGPPP---------------PPRGGDPFWDGPGDPMRGGPMR 693
PG G PG P P + GP P R G P +DGP P +
Sbjct: 638 ---PGERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQ 694
Query: 694 GGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARG--------GRSGGGPPNGRGGPG-GG 744
G PG H+GR G G P PP FRG G G S GPP G PG G
Sbjct: 695 GAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGVNG 754
Query: 745 MVG--GGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG--GGGGHRPH 800
G G H GP G G SG +GP G G EGP G G G G +
Sbjct: 755 QKGIPGDPAFGHLGPPGKRG-LSGVPGIKGPRGDPGCPGA--EGPAGIPGFLGLKGPKGR 811
Query: 801 EGPGG--GISGGSGHRPHEG-------------PGGGMGAGGGHRPHE-GPGGSMGGSGG 844
EG G G+ G GH G PG GG +P + GP G G G
Sbjct: 812 EGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGL 871
Query: 845 HRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGG-GGHRGHDGGHSHG 903
PG GP G +PG G D PP PG G G RG G
Sbjct: 872 PGLPGRPGAHGPPG--LPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEGCP 929
Query: 904 G 904
G
Sbjct: 930 G 930
Score = 97.8 bits (242), Expect = 4e-20
Identities = 139/447 (31%), Positives = 155/447 (34%), Gaps = 95/447 (21%)
Query: 510 EPYEPIPPKLIPLD-----EECSMDETPYVETLEPGGSGGSPD-----GAGGSKLPPVLA 559
EP P PP +D + D + P G GSP GA G + P +
Sbjct: 1052 EPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQ 1111
Query: 560 NLMGSMG-----AGKGPQG-PGGGGINVQEILTSIMGSPNSH--------PSEELLKQPD 605
GS G GP G PG G+ MG P P +K P
Sbjct: 1112 GPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPS 1171
Query: 606 YSDKIKQMLVPHGLLGPGPI--ANGFPPGGPGGP------KGMQHFPPGPGGPMPGPHGG 657
S + + HGL G A+G GP GP KG + P PG PGP G
Sbjct: 1172 GSPGLNGL---HGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGK 1228
Query: 658 PGGPVGPRLLGPPPP-----------PRGGDPFWDGPGDPMRGGPMRGGPGPG--PGPYH 704
G P P GPP P P G P GP P GP RG PGP PG
Sbjct: 1229 KGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGP--DGP-RGAPGPPGLPGSVD 1285
Query: 705 RGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVGGGGHRPHEGPGGGMGN 763
RG G P PP GPP G PG G G G +GP G G
Sbjct: 1286 LLRGEPGDCGLPGPP-------------GPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGP 1332
Query: 764 SSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-----------GGISGGSG 812
PH PG G + GP G G G P PG G+ G G
Sbjct: 1333 QG---PHGFPG---PPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPG 1386
Query: 813 HRPHEGPGGGMGAGGGHRPHEGPG--GSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGH 870
R GP G MG G P GPG G G G PG GP G + G G
Sbjct: 1387 MR---GPEGAMGLPGMRGP-SGPGCKGEPGLDGRRGVDGVPGSPGPPGRK-----GDTGE 1437
Query: 871 D--HRGPPPHEHRGHDGPGHGGGGHRG 895
D GP P G GP G G+ G
Sbjct: 1438 DGYPGGPGPPGPIGDPGPKGFGPGYLG 1464
Score = 96.7 bits (239), Expect = 9e-20
Identities = 130/433 (30%), Positives = 146/433 (33%), Gaps = 89/433 (20%)
Query: 539 PGGSGGSPDGAGGSKLPPVLA--NLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G P G + +P L G G P PG G + + I G P
Sbjct: 784 PRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGL-- 841
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHG 656
P Y P G PG + GP GP GM+ P PG PG HG
Sbjct: 842 -------PGYPGSPG---APGGKGQPGDV-------GPPGPAGMKGLPGLPG--RPGAHG 882
Query: 657 GPG-----GPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRG 711
PG GP G L PP P+G PG P RG PG P +G G
Sbjct: 883 PPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGE----RGKPGAEGCPGAKGEPGEK 938
Query: 712 GNEPPPPPPPFRGARG-----------------GRSGG-GPPNGRGGPGG-GMVGGGGHR 752
G P RGA+G G G GPP G PG G G G +
Sbjct: 939 GMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQ 998
Query: 753 PHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG-----------GGGGHRPHE 801
G G G HR G G G P GP GS G G G
Sbjct: 999 GRRGEPGRYGPPGFHRGEPGEKGQPGPPGPP--GPPGSTGLRGFIGFPGLPGDQGEPGSP 1056
Query: 802 GPGG--GISGGSGHR-------PHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEG 850
GP G GI G G + H GP G G G G H G G G G P
Sbjct: 1057 GPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGS 1116
Query: 851 PGHGGPHGHR-------PHDVPGHRGH--DHRGPPPHEHRGHDG-PG----HGGGGHRGH 896
PG GP G H +PG RG + P P +G G PG G G G
Sbjct: 1117 PGRPGPPGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGL 1176
Query: 897 DGGHSHGGDMSNR 909
+G H G +
Sbjct: 1177 NGLHGLKGQKGTK 1189
Score = 94.4 bits (233), Expect = 5e-19
Identities = 139/470 (29%), Positives = 161/470 (34%), Gaps = 112/470 (23%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
PG G S GA G K P G G+ P PG G ++G P
Sbjct: 287 PGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPGLKGE------LGLVGDPGLFG-- 338
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHF----PPGPGG----- 649
L P + P G+L P+ PPG PG P PPGP G
Sbjct: 339 --LIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGPPGPPGLLGRP 396
Query: 650 -----PMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDP----MRGGP-MRGGPG-- 697
M GP G G P P L G P D PG P + G P ++G PG
Sbjct: 397 GEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGLPGSS 456
Query: 698 --------PGP--------GPYHRGRGGRGGNE-----------PPPPP--PPFRGARG- 727
PGP P RG G GNE PP PP P +G++G
Sbjct: 457 VIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQGSKGD 516
Query: 728 -------GRSGG-GPPNGRGGPG-GGMVGGGGHRPHEGPGGGM--GNSSGHRPHEGPGGG 776
G G GPP G PG G G G ++G G M GH+ GP G
Sbjct: 517 LGLPGWLGTKGDPGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGP 576
Query: 777 MGSGHRP-------HEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAG--- 826
G +P H G G G G H G G G G GP G G G
Sbjct: 577 PGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPG 636
Query: 827 -GGHRPHEGPGGSMG--GSGGHRPHEG---------------PGHGGPHGHR----PHDV 864
G R H G G G G G + +G PG GP G + P
Sbjct: 637 PPGERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGA 696
Query: 865 PGHRGHD-HRGPPPHEHRGHDGPGH--GGGGHRGHDGGHSHGGDMSNRPV 911
PG G D H+G P G G G G RG G GG+ + PV
Sbjct: 697 PGLSGSDGHKGRP-----GTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPV 741
Score = 92.0 bits (227), Expect = 2e-18
Identities = 96/285 (33%), Positives = 111/285 (38%), Gaps = 44/285 (15%)
Query: 622 PGPIANGFPPGGPGGP--KGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPP----PPPRG 675
PG PPG PG P G++ F PG +PG G PG P P G P
Sbjct: 1017 PGEKGQPGPPGPPGPPGSTGLRGFIGFPG--LPGDQGEPGSPGPPGFSGIDGARGPKGNK 1074
Query: 676 GDPFWD-GPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGP 734
GDP GP P +G PG P H G G G P +G RG GP
Sbjct: 1075 GDPASHFGPPGP------KGEPGSPGCPGHFGASGEQGL------PGIQGPRGSPGRPGP 1122
Query: 735 PNGRGGPG-------GGMVGGGGHRPHEGPGGGMGNSSGHRPH--EGPGGGMG-SGHRPH 784
P G PG G+ G G GP G G+ P +GP G G +G
Sbjct: 1123 PGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGL 1182
Query: 785 EGPGGSMGGGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGS 842
+G G+ G G H GP G GI G G R G G + G R +GP G G S
Sbjct: 1183 KGQKGTKGASGLH--DVGPPGPVGIPGLKGERGDPGSPGI--SPPGPRGKKGPPGPPGSS 1238
Query: 843 GGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPP-PHEHRGHDGP 886
G PG G G P D+P +GPP P RG GP
Sbjct: 1239 GP------PGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGP 1277
Score = 90.1 bits (222), Expect = 9e-18
Identities = 144/423 (34%), Positives = 165/423 (39%), Gaps = 82/423 (19%)
Query: 541 GSGGSPDGAGGSKLP--PVLANLMGSMGAGK-------GPQGPGGG-GINVQEILTSIMG 590
G G P G +++P P MG G G GP GP G G+N Q+ G
Sbjct: 704 GHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGVNGQK------G 757
Query: 591 SPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPG-----PIANGFPPGGPG-----GPKGM 640
P P+ L P K VP G+ GP P A G P G PG GPKG
Sbjct: 758 IPGD-PAFGHLGPPG---KRGLSGVP-GIKGPRGDPGCPGAEG-PAGIPGFLGLKGPKGR 811
Query: 641 QHFPPGPGGPMPGPH----GGPGGPVGPRLLGPPPPPRGGDPFWDG-PGDPMRGGP--MR 693
+ PG P P H G PG P P L G P P G P G PGD GP M+
Sbjct: 812 EGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSP--GAPGGKGQPGDVGPPGPAGMK 869
Query: 694 GGPG-PG-PG----PYHRGRGGRGGNEPPPPPPPFRGARG-----------GRSGG-GPP 735
G PG PG PG P G G G++ P PP +G RG G+ G G P
Sbjct: 870 GLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEGCP 929
Query: 736 NGRGGPG-GGMVGGGGHRPHEGPGGGMG-----------NSSGHRPHEGPGGGMG-SGHR 782
+G PG GM G G R G G +G + G GP G G G R
Sbjct: 930 GAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGER 989
Query: 783 PHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMG 840
+G G M G G GP G G G + GP G G G G R G G G
Sbjct: 990 GDKGTPG-MQGRRGEPGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPG 1048
Query: 841 GSGGHRPHEGPGHGGPHGHRPHDVPGHRGH--DHRGPP-PHEHRGHDG-PGH-GGGGHRG 895
G PG G G R G++G H GPP P G G PGH G G +G
Sbjct: 1049 DQGEPGSPGPPGFSGIDGAR--GPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQG 1106
Query: 896 HDG 898
G
Sbjct: 1107 LPG 1109
Score = 71.2 bits (173), Expect = 4e-12
Identities = 88/278 (31%), Positives = 101/278 (36%), Gaps = 38/278 (13%)
Query: 646 GPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHR 705
G GP PGP G P GP+GP L P P G+ G P +G GP P
Sbjct: 62 GSRGP-PGPPG-PQGPIGP-LGAPGPIGLSGEKGMRGDRGPPGAAGDKGDKGPTGVPGFP 118
Query: 706 GRGGRGGNEPPPPP---PPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMG 762
G G G+ PP P P G G R G P GRG +G GG H G G G
Sbjct: 119 GLDGIPGHPGPPGPRGKPGMSGHNGSRGDPGFPGGRGA-----LGPGGPLGHPGEKGEKG 173
Query: 763 NS----SGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHE 817
NS + +G G G P GS G GG P PG G+ G G
Sbjct: 174 NSVFILGAVKGIQGDRGDPGLPGLP-----GSWGAGGPAGPTGYPGEPGLVGPPGQPGRP 228
Query: 818 GPGGGMGAG-GGHRPHEGPGGSMGGSGGHRPHEGPG---HGGPHGHRPHDVPGHRGHDHR 873
G G G G G G G G G E P + G G + +PG G
Sbjct: 229 GLKGNPGVGVKGQMGDPGEVGQQGSPGPTLLVEPPDFCLYKGEKGIK--GIPGMVGL--- 283
Query: 874 GPPPHEHRGHDGPGHGG-------GGHRGHDGGHSHGG 904
P P +G G G G G RG G + G
Sbjct: 284 -PGPPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPG 320
Score = 69.3 bits (168), Expect = 2e-11
Identities = 85/257 (33%), Positives = 92/257 (35%), Gaps = 59/257 (22%)
Query: 630 PPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRG 689
P G GP G PPGP GP+ GP G PG P+G L G
Sbjct: 59 PEKGSRGPPG----PPGPQGPI-GPLGAPG-PIG--LSGEKG------------------ 92
Query: 690 GPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGG 749
MRG GP G G G++ P P F G G GPP RG P GM G
Sbjct: 93 --MRGDRGPP------GAAGDKGDKGPTGVPGFPGLDGIPGHPGPPGPRGKP--GMSGHN 142
Query: 750 GHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISG 809
G R G GG G GPGG +G H G G G G GI G
Sbjct: 143 GSRGDPGFPGGRGAL-------GPGGPLG-----HPGEKGEKGNSVFIL---GAVKGIQG 187
Query: 810 GSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG 869
G G G GAGG GP G G G P PG G G+ V G G
Sbjct: 188 DRGDPGLPGLPGSWGAGG----PAGPTGYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMG 243
Query: 870 HDHRGPPPHEHRGHDGP 886
P +G GP
Sbjct: 244 ----DPGEVGQQGSPGP 256
Score = 63.9 bits (154), Expect = 7e-10
Identities = 95/300 (31%), Positives = 109/300 (36%), Gaps = 58/300 (19%)
Query: 616 PHGLLG-PGPIA---------NGFPPGGPG-----GPKGMQHFPPGPGGPMPGPHGGPGG 660
P G LG PGPI + PPG G GP G+ FP G +PG H GP G
Sbjct: 75 PIGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKGDKGPTGVPGFPGLDG--IPG-HPGPPG 131
Query: 661 PVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPP 720
P G P G + PG P GG RG GPG H G G GN
Sbjct: 132 PRG------KPGMSGHNGSRGDPGFP--GG--RGALGPGGPLGHPGEKGEKGNS-VFILG 180
Query: 721 PFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSG 780
+G +G R G P G G G G G + G G +G G G G G G
Sbjct: 181 AVKGIQGDRGDPGLPGLPGSWGAG--GPAGPTGYPGEPGLVG-PPGQPGRPGLKGNPGVG 237
Query: 781 HRPHEGPGGSMGGGGGHRPH---EGPG-------GGISGGSGHRPHEGPGGGMGAGG-GH 829
+ G G +G G P E P GI G G GP G G G G
Sbjct: 238 VKGQMGDPGEVGQQGSPGPTLLVEPPDFCLYKGEKGIKGIPGMVGLPGPPGRKGESGIGA 297
Query: 830 RPHEGPGGSMGGSGGHRPHEGPGHGGPHGH-------------RPHDVPGHRGHDHRGPP 876
+ +G G G G + PG G G P PG+RGH GPP
Sbjct: 298 KGEKGIPGFPGPRGDPGSYGSPGFPGLKGELGLVGDPGLFGLIGPKGDPGNRGHP--GPP 355
Score = 52.8 bits (125), Expect = 2e-06
Identities = 74/229 (32%), Positives = 81/229 (35%), Gaps = 78/229 (34%)
Query: 539 PGGSGG-SPDGAGGSKLPPVLAN----LMGSMG--AGKGPQGPGGGGINVQEILTSIMGS 591
PG G PDG G+ PP L L G G GP GP G
Sbjct: 1260 PGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPG--------------- 1304
Query: 592 PNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPGGPKGMQHFPPGPGGP 650
P P + D D K P G GP GP +GFP GP G KG+ PPG GP
Sbjct: 1305 PPGPPGYKGFPGCDGKDGQKG---PVGFPGPQGP--HGFP--GPPGEKGLPG-PPGRKGP 1356
Query: 651 --MPGPHGGPG---------------------GPVG----PRLLGPPPPPRGGDPFWDG- 682
+PGP G PG GP G P + GP P G+P DG
Sbjct: 1357 TGLPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKGEPGLDGR 1416
Query: 683 ------PGDP-------------MRGGPMRGGPGPGPGPYHRGRGGRGG 712
PG P GGP GP PGP G G GG
Sbjct: 1417 RGVDGVPGSPGPPGRKGDTGEDGYPGGPGPPGPIGDPGPKGFGPGYLGG 1465
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 111 bits (277), Expect = 4e-24
Identities = 152/473 (32%), Positives = 181/473 (38%), Gaps = 78/473 (16%)
Query: 470 PSPLVTPGSNSQERYIQAEREKGILQELFL----NKESPHEPDPEPYEPIPPKLIPLDEE 525
P P PG Q I KG + ++ E P P P +P P L P +
Sbjct: 1005 PGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGL-PGQKG 1063
Query: 526 CSMDETPYVETL----------EPG--GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG 573
D P + ++ EPG G G+P G GS P L L G+ GA KG G
Sbjct: 1064 DKGD--PGISSIGLPGLPGPKGEPGLPGYPGNP-GIKGSVGDPGLPGLPGTPGA-KGQPG 1119
Query: 574 ----------PGGGGINVQEILTSIMGSPN-----SHPSEELLKQPDYSDKIKQMLVP-- 616
PG GI+ + G P HP + P K Q +P
Sbjct: 1120 LPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP--GPPGEKGKPGQDGIPGP 1177
Query: 617 ---HGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGP-MPGPHGGPGGPVGPRLLGPP 670
G G N PPG PG G KG P PG P +PGP G PG P + GPP
Sbjct: 1178 AGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPP 1237
Query: 671 PPPRGGDPFWDGP-GDPMRGGP-----MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRG 724
PP P +GP G+P GP +G PGP P G GG G + P P G
Sbjct: 1238 GPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG 1297
Query: 725 ARGGRSGGGPPNGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGSGH 781
G + GPP +G PG G+ G G G G GM SG GP G G
Sbjct: 1298 LPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIG 1357
Query: 782 RPHEGPGGSMGGGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGS- 838
P GP G G G +G G GI G G + GP G G G P PG +
Sbjct: 1358 PP--GPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNG 1415
Query: 839 ---MGGSGGHRPHEG-PGHGGPHGHRPHDVPGHRGHDHRGPP-PHEHRGHDGP 886
G+GG + G PG PG RG D GPP P +G GP
Sbjct: 1416 LPGFDGAGGRKGDPGLPGQ-----------PGTRGLD--GPPGPDGLQGPPGP 1455
Score = 99.4 bits (246), Expect = 1e-20
Identities = 135/430 (31%), Positives = 152/430 (35%), Gaps = 75/430 (17%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGP-------------GGGGINVQEIL 585
P GS G P AG S P MG MG GP GP G G+ Q L
Sbjct: 876 PPGSPGLPGKAGASGFPGTKGE-MGMMGP-PGPPGPLGIPGRSGVPGLKGDDGLQGQPGL 933
Query: 586 TSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--GPKGMQHF 643
G S L P D P+ L G PG PG GPKG Q
Sbjct: 934 PGPTGEKGSKGEPGLPGPPGPMD-------PNLLGSKGEKGEPGLPGIPGVSGPKGYQGL 986
Query: 644 PPGPGGP----------MPGPHGGPGGPVGPRLLGPP-----------PPPRG--GDPFW 680
P PG P PGP G PG P P L+GPP P P+G G P
Sbjct: 987 PGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGP 1046
Query: 681 DG-PGDPMRGG-PMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGR 738
G PG P G P + G PG G G G + P P + G G + G P
Sbjct: 1047 SGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLP 1106
Query: 739 GGPGG----GMVGGGGHRPHEGPGG--GMGNSSGHRPHEG-PGGGMGSGHRPHEGPGGSM 791
G PG G G G GP G G+ G+ G PG G GH GP G
Sbjct: 1107 GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEK 1166
Query: 792 G--------GGGGHRPHEGPGG-------GISGGSGHRPHEGPGGGMGAGGGHRPHEGPG 836
G G G + G G G+ G SG + G G G G P +G
Sbjct: 1167 GKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGP-KGEP 1225
Query: 837 GSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPG--HGGGGHR 894
G G G P PG GP P PG +G R P G +GP G GG +
Sbjct: 1226 GFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGR-PGFQGLPGPEGPPGLPGNGGIK 1284
Query: 895 GHDGGHSHGG 904
G G G
Sbjct: 1285 GEKGNPGQPG 1294
Score = 98.2 bits (243), Expect = 3e-20
Identities = 127/372 (34%), Positives = 145/372 (38%), Gaps = 63/372 (16%)
Query: 539 PGGSG--GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
PG G GS G P + G +G+ P PG G Q+ L + G P P
Sbjct: 535 PGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG-PKGEP 593
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPGGPKGMQHFPPGPGGP-MPGP 654
K + G +GP GP GF P GP G KG+Q PG P +PGP
Sbjct: 594 GGITFKGERGPPGNPGLPGLPGNIGPMGP--PGFGPPGPVGEKGIQGVAGNPGQPGIPGP 651
Query: 655 HGGPG------------------GPVG----PRLLGPPP----PPRGGDPFWDGPGDPMR 688
G PG G VG P L G P P G+P G G P
Sbjct: 652 KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGP 711
Query: 689 GGPMRGGPG-PGPGPYHRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRGGPG-GG 744
GP +G PG PGP P G GR G E PP PP F G +G G + GPP G PG G
Sbjct: 712 PGP-KGFPGIPGP-PGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKG 769
Query: 745 MVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEG-- 802
+G G R GP GP G G P GP G +G G P
Sbjct: 770 ALGPKGDRGFPGP-------------PGPPGRTGLDGLP--GPKGDVGPNGQPGPMGPPG 814
Query: 803 -PGGGISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGG-SMGGSGGHRPHEG-PGHGGPH 857
PG G+ G G GP G G G G + GP G + G G R G PG GP
Sbjct: 815 LPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPI 874
Query: 858 GHRPHDVPGHRG 869
G P PG G
Sbjct: 875 G--PPGSPGLPG 884
Score = 96.7 bits (239), Expect = 9e-20
Identities = 166/530 (31%), Positives = 189/530 (35%), Gaps = 142/530 (26%)
Query: 538 EPGGSG----------GSP--DGAGGSKLPPVLANLMGSMGAG-----------KGPQGP 574
+PG G GSP GA G PP L G GA GP GP
Sbjct: 847 DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGP 906
Query: 575 GGG-GINVQEILTSIMGSPNSHPSEELLKQPDYSDKI--KQMLVPHGLLG-PGPI----- 625
G GI + G P + L QP K GL G PGP+
Sbjct: 907 PGPLGIPGRS------GVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLL 960
Query: 626 ----ANGFP--PGGPG--GPKGMQHFPPGPGGP----------MPGPHGGPGGPVGPRLL 667
G P PG PG GPKG Q P PG P PGP G PG P P L+
Sbjct: 961 GSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLI 1020
Query: 668 GPP-----------PPPRG--------------------------GDPFWDGPGDPMRGG 690
GPP P P+G GDP G P G
Sbjct: 1021 GPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPG 1080
Query: 691 PMRGGPG-PG-PG----------PYHRGRGGRGGNEPPPPPPPFRGARG--GRSG-GGPP 735
P +G PG PG PG P G G G + P P F G G G G GPP
Sbjct: 1081 P-KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPP 1139
Query: 736 NGRGGPG-GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRP---HEGPGGSM 791
G PG G VGGGGH GP G G G GP G G +P + GP G
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKG-KPGQDGIPGPAGQKGEPGQPGFGNPGPPGLP 1198
Query: 792 GGGGGHRPHEGPGG--GISGGSG-HRPHEGPG--GGMGAGGGHRPHEGPGGSMGGSGGHR 846
G G +G GG GI G G P PG G G G P PG ++ G G+
Sbjct: 1199 GLSG----QKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNP 1254
Query: 847 PHEGP-------GHGGPHGHRPHDVPGHRG-HDHRGPPPHEH-------RGHDGPGHGGG 891
+GP G GP G P +PG+ G +G P +G GP G
Sbjct: 1255 GPQGPPGRPGFQGLPGPEG--PPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGP-PGLQ 1311
Query: 892 GHRGHDGGHSHGGDMSNRPVCRHFMMKGNCRYENNCA-FYHPGVNGPPLP 940
G+ G G + GD V MKG + PG+ GPP P
Sbjct: 1312 GNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGP 1361
Score = 79.3 bits (194), Expect = 2e-14
Identities = 92/274 (33%), Positives = 105/274 (38%), Gaps = 31/274 (11%)
Query: 633 GPGGPKGMQHFPPGPGGP-MPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDG-PGDPMRGG 690
G G KG + FP G P +PG GP GP GPR G DG PG P G
Sbjct: 42 GIKGEKGERGFPGLEGHPGLPG-FPGPEGPPGPR----------GQKGDDGIPGPPGPKG 90
Query: 691 PMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVGGG 749
+RG PG P G G G++ P P G G + G P G PG G G
Sbjct: 91 -IRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPP 149
Query: 750 GHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISG 809
G +G G + SS P PG G + GP G G G P G+ G
Sbjct: 150 GIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGP-----PGLMG 204
Query: 810 GSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG 869
G GP G MG +GP G G G P PG RP DV +G
Sbjct: 205 PPGPPGLPGPKGNMGLN-----FQGPKGEKGEQGLQGPPGPPGQISEQ-KRPIDVEFQKG 258
Query: 870 HD----HRGPP-PHEHRGHDGPGHGGGGHRGHDG 898
RGPP P RG GP G G +G G
Sbjct: 259 DQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQG 292
Score = 79.0 bits (193), Expect = 2e-14
Identities = 132/435 (30%), Positives = 159/435 (36%), Gaps = 80/435 (18%)
Query: 539 PGGSG-GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQ-----EILTSIMGSP 592
PG G P G G PP LMG G P G G+N Q + + G P
Sbjct: 179 PGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP 238
Query: 593 NSHPSEELLKQP-DYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGM--QHFPPGPGG 649
K+P D + +P PGP PPG PGG KG + PG G
Sbjct: 239 GPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRG 298
Query: 650 PMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGP--MRGGPGPGPGP----- 702
PG G G P G P P GDP + PG+P R G +G GP PGP
Sbjct: 299 -KPGKDGENGQP------GIPGLP--GDPGY--PGEPGRDGEKGQKGDTGP-PGPPGLVI 346
Query: 703 YHRGRG---GRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG---------GMVGGGG 750
G G G GN P P +G RG GPP G PG G G G
Sbjct: 347 PRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERG 406
Query: 751 HRPHEGPGG-------GMGNSSGHRPHEGPGGGMGSGHRPHE--------GPGGSMGGGG 795
+ EGP G G+ G GP G G P + GP GS G G
Sbjct: 407 QKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKG 466
Query: 796 --GHRPHEGP---------GGGISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGS 842
G + +G G GISG G G G G+ G G + +G G+ G
Sbjct: 467 LQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPK 526
Query: 843 GGHRPHEGPGHGGPHGHR--PHDV---PGHRGH--DHRGPPPHEHRGHDG-PGHGG---- 890
G PG G G + P D+ PG +G + P G G PG G
Sbjct: 527 GLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGL 586
Query: 891 GGHRGHDGGHSHGGD 905
G +G GG + G+
Sbjct: 587 PGPKGEPGGITFKGE 601
Score = 78.2 bits (191), Expect = 3e-14
Identities = 101/341 (29%), Positives = 120/341 (35%), Gaps = 66/341 (19%)
Query: 616 PHGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGPMPGPHG-----------GPGGPV 662
P GL GP A PPG PG G +G + PG +PGP G GP GP
Sbjct: 381 PPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 663 GPRL--------LGPPPPPRG----------------GDPFWDGPGDPMRGGPMRGG-PG 697
GP + GPP PP GD ++ G + G P + G PG
Sbjct: 441 GPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPG 500
Query: 698 -PGPG-----PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-----GMV 746
PGP P +G G+ G P P GA G G P +G PG GM
Sbjct: 501 LPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPG---APGFPGSKGEPGDILTFPGMK 557
Query: 747 GGGGHRPHEGPGG--GMGNSSGH-------RPHEGPGGGMGSGHRPHEGPGGSMGGGGGH 797
G G G G G+ + G P PGG G R G G G G
Sbjct: 558 GDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNI 617
Query: 798 RPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPH 857
P PG G G G + +G G G G P PG ++ G PG G
Sbjct: 618 GPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDV 677
Query: 858 GHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDG 898
G +PG G + P PG G G G G
Sbjct: 678 G-----LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPG 713
Score = 77.4 bits (189), Expect = 6e-14
Identities = 109/354 (30%), Positives = 125/354 (35%), Gaps = 71/354 (20%)
Query: 616 PHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP-------MPGP------------HG 656
P G G I P G GP G+ FP PG P PGP G
Sbjct: 73 PRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERG 132
Query: 657 GPGGPVGPRLLGPPPPP----RGGDP------FWDGP-GDPMRGGP--MRGGPGPGPGPY 703
PG P P L GPP PP G+P GP G+P GP ++G PGP P
Sbjct: 133 FPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPG 192
Query: 704 HRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRG-----GPGG------------- 743
G G G PP PP G +G G + GP +G GP G
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 744 -----GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGS-GHRPHEGPGGSMGGGGGH 797
G G G R GP G G +G G G G R G G G G
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 798 RPHEGPG-GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGP 856
PG G G G + +G G G G P G G ++G G PG G
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Query: 857 HG----HRPHDVPGHRGHDHRGPP-----PHE--HRGHDG-PGHGGGGHRGHDG 898
G P +PG G GPP P E +G +G PG G G DG
Sbjct: 373 RGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDG 426
Score = 77.0 bits (188), Expect = 8e-14
Identities = 134/459 (29%), Positives = 162/459 (35%), Gaps = 141/459 (30%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAG-----KGPQGPGGGGINVQEILTSIMGSPN 593
PG G G PP L G++G GP GP G T + G P
Sbjct: 745 PGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGR--------TGLDGLPG 796
Query: 594 SHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG----GPKGMQHFPPGPGG 649
K + P+G PGP+ PPG PG GP G PPG G
Sbjct: 797 P----------------KGDVGPNGQ--PGPMG---PPGLPGIGVQGPPG----PPGIPG 831
Query: 650 PM--PGPHGGPG---GPVGPRLLGPPPPPRGGDPFWDG----------PGDPMRGGP--- 691
P+ PG HG PG P P L P PP G P G PG P + G
Sbjct: 832 PIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGF 891
Query: 692 --------MRGGPGPGPGPYH----------RGRGGRGGNEPPPPPPPFRGARGGRSGGG 733
M G PGP PGP +G G G P P +G++G G
Sbjct: 892 PGTKGEMGMMGPPGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPG 950
Query: 734 PP-----------NGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGS 779
PP +G PG G+ G G + ++G G G SG GP G G+
Sbjct: 951 PPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGN 1010
Query: 780 GHRPHE----GPGGSMG-----GGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGG- 827
P + GP G G G G + EGP G G+ G G G G G G
Sbjct: 1011 PGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGI 1070
Query: 828 ------------------GHRPHEGPGGSMG--------GSGGHRPHEG-PGHGGPHGHR 860
G+ + G GS+G G+ G + G PG G G
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG-- 1128
Query: 861 PHDVPGHRGHDHRGPPPHEH-RGHDGPGHGGGGHRGHDG 898
PG +G GPP + G GP GGGGH G G
Sbjct: 1129 ---PPGPKGIS--GPPGNPGLPGEPGP-VGGGGHPGQPG 1161
Score = 68.6 bits (166), Expect = 3e-11
Identities = 93/305 (30%), Positives = 106/305 (34%), Gaps = 77/305 (25%)
Query: 539 PGGSGGSPDGAG-GSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
P G G P G G+ PP L L G G G P PG G L G P H
Sbjct: 1177 PAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPG------LPGPKGEPGFHGF 1230
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGP---GPIANGFPPGGPGGPKGMQHFPPGPGGP---- 650
+ P P G GP GP N P G PG P G Q P GP GP
Sbjct: 1231 PGVQGPPG----------PPGSPGPALEGPKGNPGPQGPPGRP-GFQGLP-GPEGPPGLP 1278
Query: 651 ----MPGPHGGPGGPVGPRLLG-----PPPPPRG-----------GDPFWDG-PGDPMRG 689
+ G G PG P P L G PP +G GDP G PG P
Sbjct: 1279 GNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMK 1338
Query: 690 GP--------------MRGGPGPG--PGPYHRGRGGRGGNEPP--PPPPPFRGARGGRSG 731
GP + G PGP PGP + +G PP P P +G G +
Sbjct: 1339 GPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGP 1398
Query: 732 GGPPNGRGGPGG-------GMVGGGGHRPHEGPGG-----GMGNSSGHRPHEGPGGGMGS 779
G P G PG G G GG + G G G+ G +GP G G+
Sbjct: 1399 QGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGT 1458
Query: 780 GHRPH 784
H
Sbjct: 1459 SSVAH 1463
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 108 bits (271), Expect = 2e-23
Identities = 134/411 (32%), Positives = 162/411 (39%), Gaps = 85/411 (20%)
Query: 541 GSGGSPDGAGGSKLPPVLANL--MGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
GS G P G P L + GS+G GP GP G +G P + E
Sbjct: 874 GSQGLPGFPGARGKPGPLGKVGDKGSIGF-PGPPGPEG--------FPGDIGPPGDNGPE 924
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPGGPG--GPKGMQHFPPGPG-GPM 651
+ +P + + P G LGP GP+ PPG PG G G + FP PG +
Sbjct: 925 GMKGKPG----ARGLPGPRGQLGPEGDEGPMG---PPGAPGLEGQPGRKGFPGRPGLDGV 977
Query: 652 PGPHGGPG--GPVGPR----------------------LLGPP--PPPRG--GDPFWDGP 683
G G PG GPVG + ++GPP P P+G G P G
Sbjct: 978 KGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGG 1037
Query: 684 -GDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
G P GP +G PG P RG GR G P P +G+RG + GPP +G PG
Sbjct: 1038 MGTPGEPGP-QGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLK---GPPGPQGRPG 1093
Query: 743 -GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHE----GPGGSMGGGGGH 797
G G G R H G S G GP G G+ P E GP G +G G
Sbjct: 1094 RPGQQGVAGERGHLG-------SRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEM 1146
Query: 798 RPHEGPGG----GISGGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSGGHRPH 848
P PG G+ G +G + GP G G G G EG G MG G
Sbjct: 1147 GPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDR 1206
Query: 849 EGPGHGGPHGHRPHDVPGHRGHDHRGPP-PHEHRGHDGPGHGGGGHRGHDG 898
PG G HG + + G G D GPP P G GP G G +G G
Sbjct: 1207 GDPGPDGEHGEKGQE--GLMGED--GPPGPPGVTGVRGP-EGKSGKQGEKG 1252
Score = 105 bits (262), Expect = 2e-22
Identities = 226/816 (27%), Positives = 289/816 (35%), Gaps = 165/816 (20%)
Query: 197 SLRTTAPSHAKFRSTGLELETPSLVPVKKNASTVVVS-DKYNLKPIPLKRQ---SNVAAP 252
S + TA K T + S+VP+K T + + +P ++Q ++ P
Sbjct: 356 SQKITATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVP 415
Query: 253 GDATPPAEKKYKPLNTTPNATKEIKVKIIPPQPMEGLGFLDALNSAPVPGIKIKKKKKVL 312
+ PAEK P+ P + PP L + + P+P + + K +
Sbjct: 416 ARVSRPAEK---PIQRNPGMPRP------PPPSTRPLPPTTSSSKKPIPTLARTEAK--I 464
Query: 313 SPTAAKPSPFEGKTSTE---PSTAKPSSPEPAPPSEAMDADRPGTPVPPVEVPELMDTAS 369
+ A+KP+ +TST P TA SSP P P S P T VPP TA
Sbjct: 465 TSHASKPA--SARTSTHKPPPFTALSSSPAPTPGS-TRSTRPPATMVPPTSGTSTPRTAP 521
Query: 370 LEPGALDAKPVESPGDPNQLTRKGRKRKSVTWPEEGKLREYFYFELDETERVNVNKIKDF 429
P A ++ ++K + S P LR
Sbjct: 522 AVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKPV--PLRP-------------------- 559
Query: 430 GEAAKREILSDRHAFETARRLSHDNMEEKVPWVCPRPLVLPSPLVTPGSNSQERYIQAER 489
G+AA+ LSD + R+ + P + SP T S ++
Sbjct: 560 GKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPT-SSGYSIFHLAGST 618
Query: 490 EKGILQELFLNKESPHEPDPEPYEPIPPKL-----IPLDEECSMDETPYVETLEPG---- 540
+L P P + P PP L IP PY PG
Sbjct: 619 PFPLLM-------GPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGA 671
Query: 541 -GSGGSP--------DGAGGSKLPPVLANLMGSMGAGKGPQG-PGGGGINVQEILTSIMG 590
G G P DGA G P L+ G G KG +G PG G ++ G
Sbjct: 672 KGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGR-KGHKGYPGPAGHPGEQGQPGPEG 730
Query: 591 SPNS--HPSEELLKQP--DYSDKIKQMLVP-HGLLG-PGPIANGFPPGGPG--GPKGMQH 642
SP + +P + L P D K + + GL G PG PG PG G GM
Sbjct: 731 SPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPG 790
Query: 643 FPP--GPGGP-----------MPGPHGGPG--GPVGPRLLGP--PPPPRG--------GD 677
FP G GP +PGP G PG G +G +LGP P P+G G+
Sbjct: 791 FPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLG--VLGPIGYPGPKGMKGLMGSVGE 848
Query: 678 PFWDG----------PGDPMRGGP--MRGGPG-PG----PGPYHR-GRGGRGGNEPPPPP 719
P G GDP G +G PG PG PGP + G G G PP P
Sbjct: 849 PGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGP 908
Query: 720 PPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMG 778
F G G GP +G PG G+ G G EG G MG G EG G G
Sbjct: 909 EGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMG-PPGAPGLEGQPGRKG 967
Query: 779 SGHRP-------------HEGPGGSMG--------------GGGGHRPHEGPGGGISGGS 811
RP GP G G G G R GP G+ G
Sbjct: 968 FPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGP-PGVPGPK 1026
Query: 812 GHRPHEGPGGGMGAGGGHRPHEGPGGSMG--GSGGHRPHEGP-GHGGPHGHRPHDVPGHR 868
G H G GGMG G P +GP GS G G G + GP G GP G + G R
Sbjct: 1027 GSMGHPGMPGGMGTPGEPGP-QGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQ-----GSR 1080
Query: 869 GHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGG 904
G +GPP + R G G RGH G G
Sbjct: 1081 G--LKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPG 1114
Score = 85.5 bits (210), Expect = 2e-16
Identities = 134/440 (30%), Positives = 168/440 (38%), Gaps = 69/440 (15%)
Query: 501 KESPHEPDPE-PYEPIPP--KLIP------LDEECSMDETPYVETLEPGGSGGSPDGAGG 551
K P EP P+ P PI P ++ P + E E L P G+ G G G
Sbjct: 1125 KGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGE-QGLIG 1183
Query: 552 SKLPPVLANLMGSMGAG--KGPQG-PGGGGINVQEILTSIMGS--PNSHPSEELLKQPDY 606
+ P L G MG KG +G PG G + ++ +MG P P ++ P+
Sbjct: 1184 QRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEG 1243
Query: 607 SDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP-MPGPHGGPG--GPVG 663
+ G G A G+ G G P PG P PGP G G GP G
Sbjct: 1244 KSGKQGEKGRTGAKG----AKGYQ-----GQLGEMGVPGDPGPPGTPGPKGSRGSLGPTG 1294
Query: 664 -PRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPF 722
P +G P G +DG + GP+ G PGP +G G+ E PP PP
Sbjct: 1295 APGRMGAQGEP--GLAGYDGHKGIV--GPL-GPPGPKGEKGEQGEDGKA--EGPPGPPGD 1347
Query: 723 RGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMG-SGH 781
RG G R G P G PG V G +P G H GP G G G
Sbjct: 1348 RGPVGDRGDRGEPGDPGYPGQEGVQGLRGKP---------GQQGQPGHPGPRGWPGPKGS 1398
Query: 782 RPHEGPGGSMG--GGGGHRPHEGPGG-----GISGGSGHRPHEGPGGGMGAGG--GHRPH 832
+ EGP G G G G R +G G G+ G G GP G G G G +
Sbjct: 1399 KGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGE 1458
Query: 833 EGPGGSMG--GSGGHRPHEG----PGHGGPHGHRPHD-VPGHRGHDHRGPPPHEHRGHDG 885
+G G G G G R + G PG GP G + +PG G P RG +G
Sbjct: 1459 QGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLG-------PPGKRGTEG 1511
Query: 886 PGHGGGGHRGHDGGHSHGGD 905
G G++G G GD
Sbjct: 1512 -RTGLPGNQGEPGSKGQPGD 1530
Score = 81.6 bits (200), Expect = 3e-15
Identities = 117/351 (33%), Positives = 130/351 (37%), Gaps = 66/351 (18%)
Query: 616 PHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPG--------GPMPG-PHGGPGGPVG-PR 665
P GL G I P GP GP G P PG G PG H G G +G P
Sbjct: 638 PPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPG 697
Query: 666 LLG-PPPPPRGGDPFWDGPGDPMRGGP-MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFR 723
L G P PP R G + GP G P +G PGP P +G GR G P P +
Sbjct: 698 LSGNPGPPGRKGHKGYPGPA----GHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPK 753
Query: 724 GARG--GRSG----GGPPNGRGGPG-------GGMVGGGGHRPHEGPGGGMGNSSGHRPH 770
G+RG G G G RG PG GM G G GP G GN G
Sbjct: 754 GSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGN-PGELGL 812
Query: 771 EGPGGGMG-------SGHRPHEGPGGSMG--GGGGHRPHEGPGG--GISGGSGHRPHEGP 819
GP G G G + GP G G G G +G G G+ G SG +G
Sbjct: 813 PGPPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGD 872
Query: 820 GGGMGAGG--GHRPHEGPGGSMGGSG-----GHRPHEG-------PGHGGPHGHR----P 861
G G G G R GP G +G G G EG PG GP G +
Sbjct: 873 KGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGA 932
Query: 862 HDVPGHRG----HDHRGP--PPHEHRGHDGPGHGG-GGHRGHDGGHSHGGD 905
+PG RG GP PP PG G G G DG GD
Sbjct: 933 RGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGD 983
Score = 80.5 bits (197), Expect = 7e-15
Identities = 114/361 (31%), Positives = 141/361 (39%), Gaps = 45/361 (12%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G+ G P G+ GS P MG+ G PG G + + + +G P P
Sbjct: 1277 PPGTPG-PKGSRGSLGPTGAPGRMGAQGE------PGLAGYDGHKGIVGPLGPPG--PKG 1327
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPGGP-----KGMQHFPPGPGGP-M 651
E +Q + K + P G GP G + PG PG P +G++ P G P
Sbjct: 1328 EKGEQGE-DGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGH 1386
Query: 652 PGPHGGPG--------GPVGPRLLGPPPPPRG--GDPFWDGPGDPMRGGPMRGGPGPGPG 701
PGP G PG GP G + P RG G GP + + G GP
Sbjct: 1387 PGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGL 1446
Query: 702 PYHRGRGGR---GGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPG 758
P G+ G+ G++ P P G RG G P +G P G G G GP
Sbjct: 1447 PGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPP--GFKGESGLPGQLGPP 1504
Query: 759 GGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG--GGGGHRPHEGPGGGISGGSGHRPH 816
G G + G G G GS +P G G MG G G +GP G I G G +
Sbjct: 1505 GKRG-TEGRTGLPGNQGEPGSKGQP--GDSGEMGFPGMAGLFGPKGPPGDI-GFKGIQGP 1560
Query: 817 EGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHG-HRPHDVPGHRGHDHRGP 875
GP G MG G GP G +G SG P G G G P PG RG GP
Sbjct: 1561 RGPPGLMGKEG----IVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRP--GP 1614
Query: 876 P 876
P
Sbjct: 1615 P 1615
Score = 73.6 bits (179), Expect = 8e-13
Identities = 97/323 (30%), Positives = 114/323 (35%), Gaps = 51/323 (15%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG-PGGGGINVQEILTSIMGSPNSHPS 597
P G G G ++ PP G +G +G +G PG G QE + + G P
Sbjct: 1325 PKGEKGEQGEDGKAEGPPGPPGDRGPVG-DRGDRGEPGDPGYPGQEGVQGLRGKPGQQG- 1382
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGP----- 650
QP + PGP P G G GPKG Q PG
Sbjct: 1383 -----QPGH---------------PGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGL 1422
Query: 651 --MPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRG 708
+PGP G G + GP G P DG G PGP RG
Sbjct: 1423 QGLPGPRGVVGRQGLEGIAGPD-----GLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNP 1477
Query: 709 GRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG----GMVGGGGHRPHEGPGGGMG-- 762
G G PP F+G G GPP RG G G G G + G G MG
Sbjct: 1478 GVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFP 1537
Query: 763 NSSGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGG--GHRPHEGPGG-----GISGGSGHR 814
+G +GP G +G G + GP G MG G G GP G G G G
Sbjct: 1538 GMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDW 1597
Query: 815 PHEGPGGGMGAGGGHRPHEGPGG 837
+GP G G G P PGG
Sbjct: 1598 GLQGPRGPPGPRGRPGPPGPPGG 1620
Score = 45.4 bits (106), Expect = 2e-04
Identities = 47/143 (32%), Positives = 53/143 (37%), Gaps = 26/143 (18%)
Query: 616 PHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP----MPGPHGGPGGPVGPRLLGPPP 671
P G G + P G G +G P G P PG G G P L GP
Sbjct: 1488 PPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKG 1547
Query: 672 PPRGGDPFWDGPGDPMRGGP-MRG-----------GPGPGPGPY-HRGRGGRGGNEPPPP 718
PP GD + G P RG P + G GP PGP +G G G + P
Sbjct: 1548 PP--GDIGFKGIQGP-RGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRG 1604
Query: 719 PPPFRGARGGRSGGGPPNGRGGP 741
PP G R GPP GGP
Sbjct: 1605 PP------GPRGRPGPPGPPGGP 1621
Score = 43.1 bits (100), Expect = 0.001
Identities = 46/130 (35%), Positives = 55/130 (42%), Gaps = 39/130 (30%)
Query: 538 EPGGSG--GSPDGAG--GSKLPPVLANLMGSMGAGKGPQGPGGG-GINVQEILTSIMGSP 592
+PG SG G P AG G K PP G +G KG QGP G G+ +E + +G
Sbjct: 1527 QPGDSGEMGFPGMAGLFGPKGPP------GDIGF-KGIQGPRGPPGLMGKEGIVGPLG-- 1577
Query: 593 NSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMP 652
+L P GL GP G GP+G PPGP G P
Sbjct: 1578 --------------------ILGPSGLPGPKGDKGSRGDWGLQGPRG----PPGPRG-RP 1612
Query: 653 GPHGGPGGPV 662
GP G PGGP+
Sbjct: 1613 GPPGPPGGPI 1622
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 108 bits (271), Expect = 2e-23
Identities = 146/451 (32%), Positives = 164/451 (36%), Gaps = 102/451 (22%)
Query: 539 PGGSGGSPDGAGGSKLP--PVLANLMGSMGAGKGPQGP----GGGGINVQEILTSIMGSP 592
P GS G G LP P GS+G GP GP G G Q L G P
Sbjct: 777 PPGSAGEKGKLGVPGLPGYPGRPGPKGSIGF-PGPLGPIGEKGKSGKTGQPGLEGERGPP 835
Query: 593 NSHPSEE---LLKQPDYSDKIKQMLVPH--------GLLGPGPIANGFP-PGGPGGPKGM 640
S QP + Q P GL GP GFP P GP G +G
Sbjct: 836 GSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPP----GFPGPKGPPGHQGK 891
Query: 641 -----------------QHFPPGPGGPMPGPHGGPG--GPVGPRLLGPPPPP----RGGD 677
Q PPGP G + GP G G GP+G R GPP PP G
Sbjct: 892 DGRPGHPGQRGELGFQGQTGPPGPAGVL-GPQGKTGEVGPLGER--GPPGPPGPPGEQGL 948
Query: 678 PFWDG----------PGDPMRGGP--MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGA 725
P +G PG + GP +RG PGP GP G G G++ PP P G+
Sbjct: 949 PGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGS 1008
Query: 726 RGGRSGGGPPNGRGGPG----------GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGG 775
G R GP G G PG G G G R GP G G P PG
Sbjct: 1009 PGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGA 1068
Query: 776 GMGSGHRPHEGPGGSMG--GGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRP 831
SG +G G+ G G G + GP G GI G +G H GP G GA G P
Sbjct: 1069 AGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAG---HPGPPGADGAQGRRGP 1125
Query: 832 -----HEGPGGSMGGSGGHRPHEGPGHGGPHGHR----------PHDVPGHRGHDHRGPP 876
+G G G G P G GP G + PH PG RG
Sbjct: 1126 PGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRG------- 1178
Query: 877 PHEHRGHDG-PG-HGGGGHRGHDGGHSHGGD 905
P G +G PG GG G G G GD
Sbjct: 1179 PQGPTGSEGTPGLPGGVGQPGAVGEKGERGD 1209
Score = 103 bits (256), Expect = 1e-21
Identities = 117/360 (32%), Positives = 131/360 (36%), Gaps = 71/360 (19%)
Query: 603 QPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPV 662
+P +K +Q P G GP + P GP GP G PG GP PGP G PG P
Sbjct: 380 EPAVIEKGQQFEGPPGAPGPQGVVG---PSGPPGPPGF----PGDPGP-PGPAGLPGIPG 431
Query: 663 GPRLLGPP------PPPRGGDPFWDGPGD---------------PMRGGP----MRGGPG 697
+ GPP P G F P M+G P + G PG
Sbjct: 432 IDGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPG 491
Query: 698 PGPGPYHRGRGGRGGNEPPPPP--------PPFR----------GARGGRSGGGPPNGRG 739
P P H G G G E P P PP R GARG GP RG
Sbjct: 492 PVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRG 551
Query: 740 GPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGG 796
G G+ G G R G G G G R EGP G G P GP G +G G
Sbjct: 552 FDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEP--GPRGLLGPRGS 609
Query: 797 HRPHEGPG-GGISGGSGHRPHEGPGGGMGAGGGHRPH-----EGPGGSMGGSGGHRPHEG 850
P PG GI G G + + GP G G G H GP G +G G P
Sbjct: 610 PGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGN 669
Query: 851 PGHGG-PHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNR 909
PG G P P PGH G P +G GP G G G+ G G NR
Sbjct: 670 PGIPGLPGSDGPLGHPGHEG-------PTGEKGAQGP-PGSAGPPGYPGPRGVKGTSGNR 721
Score = 99.8 bits (247), Expect = 1e-20
Identities = 136/396 (34%), Positives = 155/396 (39%), Gaps = 80/396 (20%)
Query: 539 PGGSGGSP--DGAGGSKLPPVLANLMGSMGAGK-----GPQG----PGGGGINVQEILTS 587
P G G P DGA G + PP L G G GP G PG G +
Sbjct: 1107 PAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVG 1166
Query: 588 IMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIA---------NGFPPGGPG--G 636
MG P+ P + P S+ + P G+ PG + + PPG PG G
Sbjct: 1167 SMG-PHGAPGPRGPQGPTGSEGTPGL--PGGVGQPGAVGEKGERGDAGDPGPPGAPGIPG 1223
Query: 637 PKGM-----QHFPPGPGGPMPGPHGGPG--------GPVG-PRLLGPPPPPR----GGDP 678
PKG P G GP PG G PG GP G P LGPP P G P
Sbjct: 1224 PKGDIGEKGDSGPSGAAGP-PGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSP 1282
Query: 679 FWDG-PGDPMRGGP--MRGGPG-PGP----GPY-HRGRGGRGGN-----EPPPPPPPFR- 723
G PGD GP G PG PGP GP H GR GR G EP P PP R
Sbjct: 1283 GEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRT 1342
Query: 724 ---GARGGRSGGGPPNGRGGPGG----GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGG 776
GARG GP RG PG G++G G GP G G G + GP G
Sbjct: 1343 GPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSG-LPGLKGDTGPKGE 1401
Query: 777 MGSGHRPHEGPGGSMG--GGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEG 834
G H G G +G G G + +G G + G G + GP G +G+ G H G
Sbjct: 1402 KG-----HIGLIGLIGPPGEAGEKGDQGLPG-VQGPPGPKGDPGPPGPIGSLG----HPG 1451
Query: 835 PGGSMGGSGGHRPHEGPGHGGPHGHR-PHDVPGHRG 869
P G G G PG GP G P PG G
Sbjct: 1452 PPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPG 1487
Score = 99.0 bits (245), Expect = 2e-20
Identities = 134/432 (31%), Positives = 161/432 (37%), Gaps = 81/432 (18%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGG-GGINVQEILTSIMGSPNSH-- 595
P G G P G P L G GA +GPQGP G G + MG P +
Sbjct: 483 PVGLTGRPGPVGLPGHP----GLKGEEGA-EGPQGPRGLQGPHGPPGRVGKMGRPGADGA 537
Query: 596 ---PSEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPG--------GPGGPKGMQHF 643
P + K D + + G G G + PPG GP GP G Q
Sbjct: 538 RGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTG-QAG 596
Query: 644 PPGPGGPM-----PGPHGGPG------GPVGPRLLGPPPPPRGGDPFWDGP-GDPMRGGP 691
PGP G + PGP G PG P +GPP P G P G G GP
Sbjct: 597 EPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEP--GPPGQQGNHGSQGLPGP 654
Query: 692 --MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG----GGM 745
+ G PG P + G G G++ P P G G + GPP G PG G+
Sbjct: 655 QGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGV 714
Query: 746 VGGGGHRPHEGPGGGMGNSS--GHRPHEGPGGGMGS----GHRPHEGPGGSMGGGGGHRP 799
G G+R +G G G G + G G G G R +GP G G G
Sbjct: 715 KGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGPK-GQAGQAG 773
Query: 800 HEGPGG--------GISGGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMG------ 840
EGP G G+ G G+ GP G +G G G + G G G
Sbjct: 774 EEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERG 833
Query: 841 --GSGGHRPHEG-PGHGGPHGHRPHD----VPGHRG-HDHRGPPPHEHRGHDGPGHGGGG 892
GS G R G G GP G D +PG +G +GPP G GP G G
Sbjct: 834 PPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPP-----GFPGP-KGPPG 887
Query: 893 HRGHDGGHSHGG 904
H+G DG H G
Sbjct: 888 HQGKDGRPGHPG 899
Score = 52.4 bits (124), Expect = 2e-06
Identities = 76/248 (30%), Positives = 93/248 (37%), Gaps = 51/248 (20%)
Query: 539 PGGSGGSPDGAGGSKLP--------PVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMG 590
P G G+ G + LP P ++ + GS G P GG G G
Sbjct: 1248 PPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPG 1307
Query: 591 SPNSH-PSEELLKQPDYSDK-IKQMLVPHGLLG-PGPIANGFPPG-----------GPGG 636
P PS + ++ +K K P G G GP+ PPG GP G
Sbjct: 1308 PPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVG 1367
Query: 637 PKGMQHFPP--GPGGPMPGPHGGPG--GPVGPR----------LLGPPPPP--RG--GDP 678
G+ P GP GP+ GP G PG G GP+ L+GPP +G G P
Sbjct: 1368 EPGLLGAPGQMGPPGPL-GPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLP 1426
Query: 679 FWDGPGDPMRGGPMRGGPGP-----GPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGG 733
GP P +G P G PGP PGP G G G + P G RG G
Sbjct: 1427 GVQGPPGP-KGDP--GPPGPIGSLGHPGP--PGVAGPLGQKGSKGSPGSMGPRGDTGPAG 1481
Query: 734 PPNGRGGP 741
PP G P
Sbjct: 1482 PPGPPGAP 1489
Score = 38.5 bits (88), Expect = 0.030
Identities = 45/145 (31%), Positives = 50/145 (34%), Gaps = 45/145 (31%)
Query: 538 EPG-----GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG----------PGGGGINVQ 582
EPG G G P G S LP L G G KG +G PG G
Sbjct: 1368 EPGLLGAPGQMGPPGPLGPSGLP----GLKGDTGP-KGEKGHIGLIGLIGPPGEAGEKGD 1422
Query: 583 EILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPG--GPKG 639
+ L + G P P G GP GPI + PG PG GP G
Sbjct: 1423 QGLPGVQGPPG----------------------PKGDPGPPGPIGSLGHPGPPGVAGPLG 1460
Query: 640 MQHFPPGPGGPMPGPHGGPGGPVGP 664
+ PG P GP GP GP
Sbjct: 1461 QKGSKGSPGSMGPRGDTGPAGPPGP 1485
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 108 bits (269), Expect = 3e-23
Identities = 128/400 (32%), Positives = 149/400 (37%), Gaps = 61/400 (15%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG----PGGGGINVQEILTSIMGSPNS 594
P G G P G G K + L G G +GP+G PG G N ++ + G P
Sbjct: 833 PTGDPG-PSGQAGEKGKLGVPGLPGYPGR-QGPKGSTGFPGFPGANGEKGARGVAGKPGP 890
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPM--P 652
+ P + P G GP + G P GP G +G P GP GP+ P
Sbjct: 891 RGQ----RGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG----PQGPQGPVGFP 942
Query: 653 GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRG-GPGPGPGPYHRGRGGRG 711
GP G PG P L G P RG F G P GG + GP GP G RG
Sbjct: 943 GPKGPPGPPGKDGLPGHPGQ-RGETGFQGKTGPPGPGGVVGPQGPTGETGPI----GERG 997
Query: 712 GNEPPPPP-----PPFRGARGGRSGGGPP--NGRGGPGGGMVGGGGHRPHEGPGGGMGNS 764
PP PP P G G + GP +G+ GP G + G G R G G G
Sbjct: 998 HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAG-LRGFPGERGLPGAQGAPGLK 1056
Query: 765 SGHRPHEGPGGGMG----SGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHEGP 819
G EGP G G G R G G +G G P PG G G G + +GP
Sbjct: 1057 GG----EGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP 1112
Query: 820 GGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPP 877
G G G G GP GS G G PG G G + + P GPP
Sbjct: 1113 AGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGP-------PGPP- 1164
Query: 878 HEHRGHDGP--------GHGGGGHRGHDGGHSHGGDMSNR 909
G GP G G G RG G GD R
Sbjct: 1165 ----GLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR 1200
Score = 107 bits (268), Expect = 4e-23
Identities = 138/430 (32%), Positives = 163/430 (37%), Gaps = 108/430 (25%)
Query: 539 PGGSGG----SPDGAGGSKLPPVLANLMGSMG--AGKGPQGP----GGGGINVQEILTSI 588
PG GG GA G + L L G G +GPQGP G G+ ++
Sbjct: 594 PGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGP 653
Query: 589 MGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHF--PPG 646
G P P GLLGP PG PG P GM PPG
Sbjct: 654 RGLPGEAG-------------------PRGLLGPRGT-----PGAPGQP-GMAGVDGPPG 688
Query: 647 PGGPMPGPHGGPGGPVGPRLLGPP--PPPRG--GDPFWDGPGDPMRGGP-MRGGPGPGPG 701
P G M GP G PG P GP P P+G G P GP +G P + G PG
Sbjct: 689 PKGNM-GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP----QGKPGLAGLPGADGP 743
Query: 702 PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG----GMVGGGGHRPHEG- 756
P H G+ G+ G + PP G + G P RG G G+ G G + +G
Sbjct: 744 PGHPGKEGQSGEKGALGPP------GPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGF 797
Query: 757 PG--GGMG--------NSSGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGG--------GH 797
PG G MG G R +GP G G +G GP G G G G+
Sbjct: 798 PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGY 857
Query: 798 RPHEGPGG-----------------GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
+GP G G++G G R GP G G+ G P G G G
Sbjct: 858 PGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP-TGKPGPKG 916
Query: 841 GSGGHRPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPPPHEHRGHDG-PGH----GGGGHR 894
SGG P PG GP G + P PG +G GPP G DG PGH G G +
Sbjct: 917 TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP--GPP-----GKDGLPGHPGQRGETGFQ 969
Query: 895 GHDGGHSHGG 904
G G GG
Sbjct: 970 GKTGPPGPGG 979
Score = 107 bits (268), Expect = 4e-23
Identities = 136/409 (33%), Positives = 151/409 (36%), Gaps = 65/409 (15%)
Query: 536 TLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGG-GGINVQEILTSIMGSPNS 594
T P G G P G PP A G+ G KGPQGP G G+ L G P
Sbjct: 1079 TAGPIGLPGRPGPQG----PPGPAGEKGAPGE-KGPQGPAGRDGVQGPVGLPGPAG-PAG 1132
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGPMP 652
P E+ DK ++ P G PPG PG GP G G G P P
Sbjct: 1133 SPGED-------GDK-GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1184
Query: 653 -GPHG--GPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPM--RGGPGPGPGPYHRGR 707
G G G G G R PP P G PG+ G + G PGP PGP RG
Sbjct: 1185 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP-PGP--RGP 1241
Query: 708 GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-------GGMVGGGGHRPHEGPGGG 760
G G + P PP G+ GG G P G PG GG G G + GP G
Sbjct: 1242 QGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGA 1301
Query: 761 MG--------NSSGHRPHEGPGGGMGSGHRPHE-GPGGSMGGGG-----GHRPHEGPGG- 805
G G + + GP G G P E GP G G GG G GP G
Sbjct: 1302 AGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1361
Query: 806 -GISGGSGHRPHEGPGGGMGAGG--------GHRPHEGPGGSMGGSGGHRPHEGPG---- 852
G +G G GP G GA G G EGP G G G P PG
Sbjct: 1362 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGL 1421
Query: 853 HGGPHGHRPHDVPGHRGHDHRGPP-PHEHRGHDG--PGHGGGGHRGHDG 898
G P +PG G D GPP P G G G G +GH G
Sbjct: 1422 RGIPGPVGEQGLPGAAGQD--GPPGPMGPPGLPGLKGDPGSKGEKGHPG 1468
Score = 102 bits (255), Expect = 1e-21
Identities = 118/360 (32%), Positives = 134/360 (37%), Gaps = 85/360 (23%)
Query: 616 PHGLLGP----GPIANGFPPGGPG--GPKGMQHFP-----PGPGGPM---PGPHGGPG-- 659
P G++GP GP PPG PG GP G P PGP G M P +GG G
Sbjct: 461 PAGIMGPPGLQGPTG---PPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSK 517
Query: 660 -----------------------GPVGPRLLGPPPPPRGGDPFWDGP----GDPMRGGP- 691
GP GP L P P GG P G GDP GP
Sbjct: 518 GPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGG-PGSSGAKGESGDPGPQGPR 576
Query: 692 -MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGG 750
++G PGP P RGR G G P P GA+G R G P G+ G G
Sbjct: 577 GVQGPPGPTGKPGKRGRPGADGGRGMPGEP---GAKGDRGFDGLP--------GLPGDKG 625
Query: 751 HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHE-GPGGSMGGGGGHRPHEGPG-GGIS 808
HR GP G G G G G +G P E GP G +G G PG G+
Sbjct: 626 HRGERGPQGPPG-PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVD 684
Query: 809 GGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSGGHRPHEGPGHGG-PHGHRPH 862
G G + + GP G G G G + GP G +G G P PG G P P
Sbjct: 685 GPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 744
Query: 863 DVPGHRGHDHR----GPP-PHEHRGHDGPG-----------HGGGGHRGHDGGHSHGGDM 906
PG G GPP P G+ GP G G +G DG GDM
Sbjct: 745 GHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDM 804
Score = 102 bits (255), Expect = 1e-21
Identities = 139/432 (32%), Positives = 162/432 (37%), Gaps = 100/432 (23%)
Query: 539 PGGSGG-SPDGAGGSKLPPVLANLMGSMGA----GK-------------GPQGP----GG 576
PG G P G G + P LA L G+ G GK GPQGP G
Sbjct: 714 PGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGP 773
Query: 577 GGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGG 636
G+ + + + GS + P + + GL G P G G
Sbjct: 774 RGVKGADGVRGLKGSKGEKGEDGF---PGFKGDM-------GLKGDRGEVGQIGPRGEDG 823
Query: 637 PKGMQHFPPGPGGPM--PGPHG--GPGGPVG-PRLLGPP--PPPRGGDPFWDGPGDPMRG 689
P+G P G GP PGP G G G +G P L G P P+G F PG P
Sbjct: 824 PEG----PKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF---PGFPGAN 876
Query: 690 GP-----MRGGPGP----GP-GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 739
G + G PGP GP GP RG RG P P P +G GG GPP RG
Sbjct: 877 GEKGARGVAGKPGPRGQRGPTGP----RGSRGARGPTGKPGP-KGTSGGDGPPGPPGERG 931
Query: 740 GPG-GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG--- 795
G G VG G + GP G G GH G G G P GPGG +G G
Sbjct: 932 PQGPQGPVGFPGPKGPPGPPGKDG-LPGHPGQRGETGFQGKTGPP--GPGGVVGPQGPTG 988
Query: 796 -----GHRPHEGPGG-----GISGGSGHRPHEGPGGGMGAGG-----------GHRPHEG 834
G R H GP G G+ G +G +G G G G G R G
Sbjct: 989 ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPG 1048
Query: 835 PGGSMGGSGGHRPHEGPGHGGPHGHR-------PHDVPGHRGHDHRGPP-PHEHRGHDGP 886
G+ G GG P PG G G R P +PG G +GPP P +G G
Sbjct: 1049 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPG--PQGPPGPAGEKGAPGE 1106
Query: 887 GHGGGGHRGHDG 898
G G G DG
Sbjct: 1107 -KGPQGPAGRDG 1117
Score = 102 bits (255), Expect = 1e-21
Identities = 136/420 (32%), Positives = 154/420 (36%), Gaps = 85/420 (20%)
Query: 538 EPGGSGGSPD-GAGGSKLPPVLANLMGSMG--AGKGPQGPGGG----GINVQEILTSIMG 590
EPG G D G G PP L +G+ G G G GP G G E G
Sbjct: 1145 EPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1204
Query: 591 SPNSHPSEELLKQPDYSDKIKQM--LVPHGLLGP----GPIANGFPPGGPG-----GPKG 639
P + L P + + + P G GP GP P G PG G G
Sbjct: 1205 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVG 1264
Query: 640 MQHFPPGPGGPMPGPHGGPGGPVGPR----LLGPP----PPPRGGDPFWDGP-GDPMRGG 690
+ P G P P G GGP G R GPP PP G P DGP G+P G
Sbjct: 1265 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP---G 1321
Query: 691 PMR--GGPGPGPGPYHRGRGGRGGN-----EPPPPPPPFRGARGGRSGGGPPNGRGGPGG 743
P+ G PGP P G+ G GG+ +P P PP G G GPP RG PG
Sbjct: 1322 PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP--GPSGEAGPPGPPGKRGPPGA 1379
Query: 744 -------GMVGGGGHRPHEGPGGGMG-----------NSSGHRPHEGPGGGMG-SGHRPH 784
G G G EGP G G G R GP G G G
Sbjct: 1380 AGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQ 1439
Query: 785 EGPGGSMG-----------GGGGHRPHEGPGG-----GISGGSGHRPHEGPGGGMGA-GG 827
+GP G MG G G + H G G G G G R G G GA G
Sbjct: 1440 DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGD 1499
Query: 828 GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVP-GHRGHDHRGPPPHEHRGHDGP 886
G P GP G +G G P PG GP G++ P G +G PP G GP
Sbjct: 1500 GGIP--GPAGPLGPPG---PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPP----GSPGP 1550
Score = 101 bits (251), Expect = 4e-21
Identities = 123/357 (34%), Positives = 141/357 (39%), Gaps = 45/357 (12%)
Query: 539 PGGSGGSPD-GAGGSKLPPVLANLMGSMGAGKGPQGPGG-----GGINVQEILTSIMGSP 592
PG G + D G G PP G GA GPQGP G GG+ ++ G+P
Sbjct: 1218 PGEKGENGDVGPMGPPGPPGPRGPQGPNGAD-GPQGPPGSVGSVGGVG-EKGEPGEAGNP 1275
Query: 593 NSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPG--GPGGPKGMQHFPPGPGGP 650
P E + P K P G GP P A G PPG GP G G FP PG P
Sbjct: 1276 GP-PGEAGVGGPKGERGEKGEAGPPGAAGP-PGAKG-PPGDDGPKGNPGPVGFPGDPGPP 1332
Query: 651 -MPGPHG--GPGGPVG----PRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPY 703
PGP G G GG G P GPP P P PG P + GP G G
Sbjct: 1333 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP----PGPPGKRGPP-GAAGAEGRQG 1387
Query: 704 HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPHEGPGGGMG 762
+G G G E PP G +G GP RG PG G G G +GP G MG
Sbjct: 1388 EKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMG 1447
Query: 763 -----------NSSGHRPHEGPGGGMGS-GHRPHEGPGGSMGGGGGHRPHEGPGGGISGG 810
S G + H G G +G G + +G G G G P GGI G
Sbjct: 1448 PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS--PGAKGDGGIPGP 1505
Query: 811 SGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVP 865
+G GP G G G G++ GP G G SG P PG GP G +P
Sbjct: 1506 AGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP---PGSPGPPGEVIQPLP 1559
Score = 51.2 bits (121), Expect = 4e-06
Identities = 78/273 (28%), Positives = 94/273 (34%), Gaps = 80/273 (29%)
Query: 504 PHEPDPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSG-GSPDGAGGSKLPPVLANLM 562
P +P P P EP P + + D P + PG SG P G G + PP A
Sbjct: 1326 PGDPGP-PGEPGPAGQDGVGGDKGEDGDPG-QPGPPGPSGEAGPPGPPGKRGPPGAAGAE 1383
Query: 563 GSMG-----AGKGPQGPGG--GGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLV 615
G G G +GP G G + Q P P E L+ + + +
Sbjct: 1384 GRQGEKGAKGEAGAEGPPGKTGPVGPQ--------GPAGKPGPEGLR--GIPGPVGEQGL 1433
Query: 616 PHGLLGPGPIANGFPPGGPG-----GPKGMQHFP--------PGPGGP-----MPGPHGG 657
P GP PPG PG G KG + P PG G +PG G
Sbjct: 1434 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1493
Query: 658 PG--------GPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGG 709
PG GP GP LGPP PP G PGP GP +G
Sbjct: 1494 PGAKGDGGIPGPAGP--LGPPGPP--------------------GLPGP-QGP----KGN 1526
Query: 710 RGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
+G P G +G GPP G PG
Sbjct: 1527 KGSTGP-------AGQKGDSGLPGPPGSPGPPG 1552
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 108 bits (269), Expect = 3e-23
Identities = 128/400 (32%), Positives = 149/400 (37%), Gaps = 61/400 (15%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG----PGGGGINVQEILTSIMGSPNS 594
P G G P G G K + L G G +GP+G PG G N ++ + G P
Sbjct: 782 PTGDPG-PSGQAGEKGKLGVPGLPGYPGR-QGPKGSTGFPGFPGANGEKGARGVAGKPGP 839
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPM--P 652
+ P + P G GP + G P GP G +G P GP GP+ P
Sbjct: 840 RGQ----RGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG----PQGPQGPVGFP 891
Query: 653 GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRG-GPGPGPGPYHRGRGGRG 711
GP G PG P L G P RG F G P GG + GP GP G RG
Sbjct: 892 GPKGPPGPPGKDGLPGHPGQ-RGETGFQGKTGPPGPGGVVGPQGPTGETGPI----GERG 946
Query: 712 GNEPPPPP-----PPFRGARGGRSGGGPP--NGRGGPGGGMVGGGGHRPHEGPGGGMGNS 764
PP PP P G G + GP +G+ GP G + G G R G G G
Sbjct: 947 HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAG-LRGFPGERGLPGAQGAPGLK 1005
Query: 765 SGHRPHEGPGGGMG----SGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHEGP 819
G EGP G G G R G G +G G P PG G G G + +GP
Sbjct: 1006 GG----EGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP 1061
Query: 820 GGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPP 877
G G G G GP GS G G PG G G + + P GPP
Sbjct: 1062 AGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGP-------PGPP- 1113
Query: 878 HEHRGHDGP--------GHGGGGHRGHDGGHSHGGDMSNR 909
G GP G G G RG G GD R
Sbjct: 1114 ----GLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR 1149
Score = 107 bits (268), Expect = 4e-23
Identities = 138/430 (32%), Positives = 163/430 (37%), Gaps = 108/430 (25%)
Query: 539 PGGSGG----SPDGAGGSKLPPVLANLMGSMG--AGKGPQGP----GGGGINVQEILTSI 588
PG GG GA G + L L G G +GPQGP G G+ ++
Sbjct: 543 PGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGP 602
Query: 589 MGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHF--PPG 646
G P P GLLGP PG PG P GM PPG
Sbjct: 603 RGLPGEAG-------------------PRGLLGPRGT-----PGAPGQP-GMAGVDGPPG 637
Query: 647 PGGPMPGPHGGPGGPVGPRLLGPP--PPPRG--GDPFWDGPGDPMRGGP-MRGGPGPGPG 701
P G M GP G PG P GP P P+G G P GP +G P + G PG
Sbjct: 638 PKGNM-GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP----QGKPGLAGLPGADGP 692
Query: 702 PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG----GMVGGGGHRPHEG- 756
P H G+ G+ G + PP G + G P RG G G+ G G + +G
Sbjct: 693 PGHPGKEGQSGEKGALGPP------GPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGF 746
Query: 757 PG--GGMG--------NSSGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGG--------GH 797
PG G MG G R +GP G G +G GP G G G G+
Sbjct: 747 PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGY 806
Query: 798 RPHEGPGG-----------------GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
+GP G G++G G R GP G G+ G P G G G
Sbjct: 807 PGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP-TGKPGPKG 865
Query: 841 GSGGHRPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPPPHEHRGHDG-PGH----GGGGHR 894
SGG P PG GP G + P PG +G GPP G DG PGH G G +
Sbjct: 866 TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP--GPP-----GKDGLPGHPGQRGETGFQ 918
Query: 895 GHDGGHSHGG 904
G G GG
Sbjct: 919 GKTGPPGPGG 928
Score = 107 bits (268), Expect = 4e-23
Identities = 136/409 (33%), Positives = 151/409 (36%), Gaps = 65/409 (15%)
Query: 536 TLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGG-GGINVQEILTSIMGSPNS 594
T P G G P G PP A G+ G KGPQGP G G+ L G P
Sbjct: 1028 TAGPIGLPGRPGPQG----PPGPAGEKGAPGE-KGPQGPAGRDGVQGPVGLPGPAG-PAG 1081
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGPMP 652
P E+ DK ++ P G PPG PG GP G G G P P
Sbjct: 1082 SPGED-------GDK-GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1133
Query: 653 -GPHG--GPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPM--RGGPGPGPGPYHRGR 707
G G G G G R PP P G PG+ G + G PGP PGP RG
Sbjct: 1134 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP-PGP--RGP 1190
Query: 708 GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-------GGMVGGGGHRPHEGPGGG 760
G G + P PP G+ GG G P G PG GG G G + GP G
Sbjct: 1191 QGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGA 1250
Query: 761 MG--------NSSGHRPHEGPGGGMGSGHRPHE-GPGGSMGGGG-----GHRPHEGPGG- 805
G G + + GP G G P E GP G G GG G GP G
Sbjct: 1251 AGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1310
Query: 806 -GISGGSGHRPHEGPGGGMGAGG--------GHRPHEGPGGSMGGSGGHRPHEGPG---- 852
G +G G GP G GA G G EGP G G G P PG
Sbjct: 1311 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGL 1370
Query: 853 HGGPHGHRPHDVPGHRGHDHRGPP-PHEHRGHDG--PGHGGGGHRGHDG 898
G P +PG G D GPP P G G G G +GH G
Sbjct: 1371 RGIPGPVGEQGLPGAAGQD--GPPGPMGPPGLPGLKGDPGSKGEKGHPG 1417
Score = 102 bits (255), Expect = 1e-21
Identities = 118/360 (32%), Positives = 134/360 (37%), Gaps = 85/360 (23%)
Query: 616 PHGLLGP----GPIANGFPPGGPG--GPKGMQHFP-----PGPGGPM---PGPHGGPG-- 659
P G++GP GP PPG PG GP G P PGP G M P +GG G
Sbjct: 410 PAGIMGPPGLQGPTG---PPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSK 466
Query: 660 -----------------------GPVGPRLLGPPPPPRGGDPFWDGP----GDPMRGGP- 691
GP GP L P P GG P G GDP GP
Sbjct: 467 GPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGG-PGSSGAKGESGDPGPQGPR 525
Query: 692 -MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGG 750
++G PGP P RGR G G P P GA+G R G P G+ G G
Sbjct: 526 GVQGPPGPTGKPGKRGRPGADGGRGMPGEP---GAKGDRGFDGLP--------GLPGDKG 574
Query: 751 HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHE-GPGGSMGGGGGHRPHEGPG-GGIS 808
HR GP G G G G G +G P E GP G +G G PG G+
Sbjct: 575 HRGERGPQGPPG-PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVD 633
Query: 809 GGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSGGHRPHEGPGHGG-PHGHRPH 862
G G + + GP G G G G + GP G +G G P PG G P P
Sbjct: 634 GPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 693
Query: 863 DVPGHRGHDHR----GPP-PHEHRGHDGPG-----------HGGGGHRGHDGGHSHGGDM 906
PG G GPP P G+ GP G G +G DG GDM
Sbjct: 694 GHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDM 753
Score = 102 bits (255), Expect = 1e-21
Identities = 139/432 (32%), Positives = 162/432 (37%), Gaps = 100/432 (23%)
Query: 539 PGGSGG-SPDGAGGSKLPPVLANLMGSMGA----GK-------------GPQGP----GG 576
PG G P G G + P LA L G+ G GK GPQGP G
Sbjct: 663 PGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGP 722
Query: 577 GGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGG 636
G+ + + + GS + P + + GL G P G G
Sbjct: 723 RGVKGADGVRGLKGSKGEKGEDGF---PGFKGDM-------GLKGDRGEVGQIGPRGEDG 772
Query: 637 PKGMQHFPPGPGGPM--PGPHG--GPGGPVG-PRLLGPP--PPPRGGDPFWDGPGDPMRG 689
P+G P G GP PGP G G G +G P L G P P+G F PG P
Sbjct: 773 PEG----PKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF---PGFPGAN 825
Query: 690 GP-----MRGGPGP----GP-GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 739
G + G PGP GP GP RG RG P P P +G GG GPP RG
Sbjct: 826 GEKGARGVAGKPGPRGQRGPTGP----RGSRGARGPTGKPGP-KGTSGGDGPPGPPGERG 880
Query: 740 GPG-GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG--- 795
G G VG G + GP G G GH G G G P GPGG +G G
Sbjct: 881 PQGPQGPVGFPGPKGPPGPPGKDG-LPGHPGQRGETGFQGKTGPP--GPGGVVGPQGPTG 937
Query: 796 -----GHRPHEGPGG-----GISGGSGHRPHEGPGGGMGAGG-----------GHRPHEG 834
G R H GP G G+ G +G +G G G G G R G
Sbjct: 938 ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPG 997
Query: 835 PGGSMGGSGGHRPHEGPGHGGPHGHR-------PHDVPGHRGHDHRGPP-PHEHRGHDGP 886
G+ G GG P PG G G R P +PG G +GPP P +G G
Sbjct: 998 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPG--PQGPPGPAGEKGAPGE 1055
Query: 887 GHGGGGHRGHDG 898
G G G DG
Sbjct: 1056 -KGPQGPAGRDG 1066
Score = 102 bits (255), Expect = 1e-21
Identities = 136/420 (32%), Positives = 154/420 (36%), Gaps = 85/420 (20%)
Query: 538 EPGGSGGSPD-GAGGSKLPPVLANLMGSMG--AGKGPQGPGGG----GINVQEILTSIMG 590
EPG G D G G PP L +G+ G G G GP G G E G
Sbjct: 1094 EPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1153
Query: 591 SPNSHPSEELLKQPDYSDKIKQM--LVPHGLLGP----GPIANGFPPGGPG-----GPKG 639
P + L P + + + P G GP GP P G PG G G
Sbjct: 1154 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVG 1213
Query: 640 MQHFPPGPGGPMPGPHGGPGGPVGPR----LLGPP----PPPRGGDPFWDGP-GDPMRGG 690
+ P G P P G GGP G R GPP PP G P DGP G+P G
Sbjct: 1214 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP---G 1270
Query: 691 PMR--GGPGPGPGPYHRGRGGRGGN-----EPPPPPPPFRGARGGRSGGGPPNGRGGPGG 743
P+ G PGP P G+ G GG+ +P P PP G G GPP RG PG
Sbjct: 1271 PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP--GPSGEAGPPGPPGKRGPPGA 1328
Query: 744 -------GMVGGGGHRPHEGPGGGMG-----------NSSGHRPHEGPGGGMG-SGHRPH 784
G G G EGP G G G R GP G G G
Sbjct: 1329 AGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQ 1388
Query: 785 EGPGGSMG-----------GGGGHRPHEGPGG-----GISGGSGHRPHEGPGGGMGA-GG 827
+GP G MG G G + H G G G G G R G G GA G
Sbjct: 1389 DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGD 1448
Query: 828 GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVP-GHRGHDHRGPPPHEHRGHDGP 886
G P GP G +G G P PG GP G++ P G +G PP G GP
Sbjct: 1449 GGIP--GPAGPLGPPG---PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPP----GSPGP 1499
Score = 101 bits (251), Expect = 4e-21
Identities = 123/357 (34%), Positives = 141/357 (39%), Gaps = 45/357 (12%)
Query: 539 PGGSGGSPD-GAGGSKLPPVLANLMGSMGAGKGPQGPGG-----GGINVQEILTSIMGSP 592
PG G + D G G PP G GA GPQGP G GG+ ++ G+P
Sbjct: 1167 PGEKGENGDVGPMGPPGPPGPRGPQGPNGAD-GPQGPPGSVGSVGGVG-EKGEPGEAGNP 1224
Query: 593 NSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPG--GPGGPKGMQHFPPGPGGP 650
P E + P K P G GP P A G PPG GP G G FP PG P
Sbjct: 1225 GP-PGEAGVGGPKGERGEKGEAGPPGAAGP-PGAKG-PPGDDGPKGNPGPVGFPGDPGPP 1281
Query: 651 -MPGPHG--GPGGPVG----PRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPY 703
PGP G G GG G P GPP P P PG P + GP G G
Sbjct: 1282 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP----PGPPGKRGPP-GAAGAEGRQG 1336
Query: 704 HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPHEGPGGGMG 762
+G G G E PP G +G GP RG PG G G G +GP G MG
Sbjct: 1337 EKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMG 1396
Query: 763 -----------NSSGHRPHEGPGGGMGS-GHRPHEGPGGSMGGGGGHRPHEGPGGGISGG 810
S G + H G G +G G + +G G G G P GGI G
Sbjct: 1397 PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS--PGAKGDGGIPGP 1454
Query: 811 SGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVP 865
+G GP G G G G++ GP G G SG P PG GP G +P
Sbjct: 1455 AGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP---PGSPGPPGEVIQPLP 1508
Score = 51.2 bits (121), Expect = 4e-06
Identities = 78/273 (28%), Positives = 94/273 (34%), Gaps = 80/273 (29%)
Query: 504 PHEPDPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSG-GSPDGAGGSKLPPVLANLM 562
P +P P P EP P + + D P + PG SG P G G + PP A
Sbjct: 1275 PGDPGP-PGEPGPAGQDGVGGDKGEDGDPG-QPGPPGPSGEAGPPGPPGKRGPPGAAGAE 1332
Query: 563 GSMG-----AGKGPQGPGG--GGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLV 615
G G G +GP G G + Q P P E L+ + + +
Sbjct: 1333 GRQGEKGAKGEAGAEGPPGKTGPVGPQ--------GPAGKPGPEGLR--GIPGPVGEQGL 1382
Query: 616 PHGLLGPGPIANGFPPGGPG-----GPKGMQHFP--------PGPGGP-----MPGPHGG 657
P GP PPG PG G KG + P PG G +PG G
Sbjct: 1383 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1442
Query: 658 PG--------GPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGG 709
PG GP GP LGPP PP G PGP GP +G
Sbjct: 1443 PGAKGDGGIPGPAGP--LGPPGPP--------------------GLPGP-QGP----KGN 1475
Query: 710 RGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
+G P G +G GPP G PG
Sbjct: 1476 KGSTGP-------AGQKGDSGLPGPPGSPGPPG 1501
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 108 bits (269), Expect = 3e-23
Identities = 128/400 (32%), Positives = 149/400 (37%), Gaps = 61/400 (15%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG----PGGGGINVQEILTSIMGSPNS 594
P G G P G G K + L G G +GP+G PG G N ++ + G P
Sbjct: 821 PTGDPG-PSGQAGEKGKLGVPGLPGYPGR-QGPKGSTGFPGFPGANGEKGARGVAGKPGP 878
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPM--P 652
+ P + P G GP + G P GP G +G P GP GP+ P
Sbjct: 879 RGQ----RGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG----PQGPQGPVGFP 930
Query: 653 GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRG-GPGPGPGPYHRGRGGRG 711
GP G PG P L G P RG F G P GG + GP GP G RG
Sbjct: 931 GPKGPPGPPGKDGLPGHPGQ-RGETGFQGKTGPPGPGGVVGPQGPTGETGPI----GERG 985
Query: 712 GNEPPPPP-----PPFRGARGGRSGGGPP--NGRGGPGGGMVGGGGHRPHEGPGGGMGNS 764
PP PP P G G + GP +G+ GP G + G G R G G G
Sbjct: 986 HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAG-LRGFPGERGLPGAQGAPGLK 1044
Query: 765 SGHRPHEGPGGGMG----SGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHEGP 819
G EGP G G G R G G +G G P PG G G G + +GP
Sbjct: 1045 GG----EGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP 1100
Query: 820 GGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPP 877
G G G G GP GS G G PG G G + + P GPP
Sbjct: 1101 AGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGP-------PGPP- 1152
Query: 878 HEHRGHDGP--------GHGGGGHRGHDGGHSHGGDMSNR 909
G GP G G G RG G GD R
Sbjct: 1153 ----GLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR 1188
Score = 107 bits (268), Expect = 4e-23
Identities = 138/430 (32%), Positives = 163/430 (37%), Gaps = 108/430 (25%)
Query: 539 PGGSGG----SPDGAGGSKLPPVLANLMGSMG--AGKGPQGP----GGGGINVQEILTSI 588
PG GG GA G + L L G G +GPQGP G G+ ++
Sbjct: 582 PGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGP 641
Query: 589 MGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHF--PPG 646
G P P GLLGP PG PG P GM PPG
Sbjct: 642 RGLPGEAG-------------------PRGLLGPRGT-----PGAPGQP-GMAGVDGPPG 676
Query: 647 PGGPMPGPHGGPGGPVGPRLLGPP--PPPRG--GDPFWDGPGDPMRGGP-MRGGPGPGPG 701
P G M GP G PG P GP P P+G G P GP +G P + G PG
Sbjct: 677 PKGNM-GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP----QGKPGLAGLPGADGP 731
Query: 702 PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG----GMVGGGGHRPHEG- 756
P H G+ G+ G + PP G + G P RG G G+ G G + +G
Sbjct: 732 PGHPGKEGQSGEKGALGPP------GPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGF 785
Query: 757 PG--GGMG--------NSSGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGG--------GH 797
PG G MG G R +GP G G +G GP G G G G+
Sbjct: 786 PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGY 845
Query: 798 RPHEGPGG-----------------GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
+GP G G++G G R GP G G+ G P G G G
Sbjct: 846 PGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP-TGKPGPKG 904
Query: 841 GSGGHRPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPPPHEHRGHDG-PGH----GGGGHR 894
SGG P PG GP G + P PG +G GPP G DG PGH G G +
Sbjct: 905 TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP--GPP-----GKDGLPGHPGQRGETGFQ 957
Query: 895 GHDGGHSHGG 904
G G GG
Sbjct: 958 GKTGPPGPGG 967
Score = 107 bits (268), Expect = 4e-23
Identities = 136/409 (33%), Positives = 151/409 (36%), Gaps = 65/409 (15%)
Query: 536 TLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGG-GGINVQEILTSIMGSPNS 594
T P G G P G PP A G+ G KGPQGP G G+ L G P
Sbjct: 1067 TAGPIGLPGRPGPQG----PPGPAGEKGAPGE-KGPQGPAGRDGVQGPVGLPGPAG-PAG 1120
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGPMP 652
P E+ DK ++ P G PPG PG GP G G G P P
Sbjct: 1121 SPGED-------GDK-GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1172
Query: 653 -GPHG--GPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPM--RGGPGPGPGPYHRGR 707
G G G G G R PP P G PG+ G + G PGP PGP RG
Sbjct: 1173 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP-PGP--RGP 1229
Query: 708 GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-------GGMVGGGGHRPHEGPGGG 760
G G + P PP G+ GG G P G PG GG G G + GP G
Sbjct: 1230 QGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGA 1289
Query: 761 MG--------NSSGHRPHEGPGGGMGSGHRPHE-GPGGSMGGGG-----GHRPHEGPGG- 805
G G + + GP G G P E GP G G GG G GP G
Sbjct: 1290 AGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1349
Query: 806 -GISGGSGHRPHEGPGGGMGAGG--------GHRPHEGPGGSMGGSGGHRPHEGPG---- 852
G +G G GP G GA G G EGP G G G P PG
Sbjct: 1350 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGL 1409
Query: 853 HGGPHGHRPHDVPGHRGHDHRGPP-PHEHRGHDG--PGHGGGGHRGHDG 898
G P +PG G D GPP P G G G G +GH G
Sbjct: 1410 RGIPGPVGEQGLPGAAGQD--GPPGPMGPPGLPGLKGDPGSKGEKGHPG 1456
Score = 102 bits (255), Expect = 1e-21
Identities = 118/360 (32%), Positives = 134/360 (37%), Gaps = 85/360 (23%)
Query: 616 PHGLLGP----GPIANGFPPGGPG--GPKGMQHFP-----PGPGGPM---PGPHGGPG-- 659
P G++GP GP PPG PG GP G P PGP G M P +GG G
Sbjct: 449 PAGIMGPPGLQGPTG---PPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSK 505
Query: 660 -----------------------GPVGPRLLGPPPPPRGGDPFWDGP----GDPMRGGP- 691
GP GP L P P GG P G GDP GP
Sbjct: 506 GPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGG-PGSSGAKGESGDPGPQGPR 564
Query: 692 -MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGG 750
++G PGP P RGR G G P P GA+G R G P G+ G G
Sbjct: 565 GVQGPPGPTGKPGKRGRPGADGGRGMPGEP---GAKGDRGFDGLP--------GLPGDKG 613
Query: 751 HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHE-GPGGSMGGGGGHRPHEGPG-GGIS 808
HR GP G G G G G +G P E GP G +G G PG G+
Sbjct: 614 HRGERGPQGPPG-PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVD 672
Query: 809 GGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSGGHRPHEGPGHGG-PHGHRPH 862
G G + + GP G G G G + GP G +G G P PG G P P
Sbjct: 673 GPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 732
Query: 863 DVPGHRGHDHR----GPP-PHEHRGHDGPG-----------HGGGGHRGHDGGHSHGGDM 906
PG G GPP P G+ GP G G +G DG GDM
Sbjct: 733 GHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDM 792
Score = 102 bits (255), Expect = 1e-21
Identities = 139/432 (32%), Positives = 162/432 (37%), Gaps = 100/432 (23%)
Query: 539 PGGSGG-SPDGAGGSKLPPVLANLMGSMGA----GK-------------GPQGP----GG 576
PG G P G G + P LA L G+ G GK GPQGP G
Sbjct: 702 PGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGP 761
Query: 577 GGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGG 636
G+ + + + GS + P + + GL G P G G
Sbjct: 762 RGVKGADGVRGLKGSKGEKGEDGF---PGFKGDM-------GLKGDRGEVGQIGPRGEDG 811
Query: 637 PKGMQHFPPGPGGPM--PGPHG--GPGGPVG-PRLLGPP--PPPRGGDPFWDGPGDPMRG 689
P+G P G GP PGP G G G +G P L G P P+G F PG P
Sbjct: 812 PEG----PKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF---PGFPGAN 864
Query: 690 GP-----MRGGPGP----GP-GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 739
G + G PGP GP GP RG RG P P P +G GG GPP RG
Sbjct: 865 GEKGARGVAGKPGPRGQRGPTGP----RGSRGARGPTGKPGP-KGTSGGDGPPGPPGERG 919
Query: 740 GPG-GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG--- 795
G G VG G + GP G G GH G G G P GPGG +G G
Sbjct: 920 PQGPQGPVGFPGPKGPPGPPGKDG-LPGHPGQRGETGFQGKTGPP--GPGGVVGPQGPTG 976
Query: 796 -----GHRPHEGPGG-----GISGGSGHRPHEGPGGGMGAGG-----------GHRPHEG 834
G R H GP G G+ G +G +G G G G G R G
Sbjct: 977 ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPG 1036
Query: 835 PGGSMGGSGGHRPHEGPGHGGPHGHR-------PHDVPGHRGHDHRGPP-PHEHRGHDGP 886
G+ G GG P PG G G R P +PG G +GPP P +G G
Sbjct: 1037 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPG--PQGPPGPAGEKGAPGE 1094
Query: 887 GHGGGGHRGHDG 898
G G G DG
Sbjct: 1095 -KGPQGPAGRDG 1105
Score = 102 bits (255), Expect = 1e-21
Identities = 136/420 (32%), Positives = 154/420 (36%), Gaps = 85/420 (20%)
Query: 538 EPGGSGGSPD-GAGGSKLPPVLANLMGSMG--AGKGPQGPGGG----GINVQEILTSIMG 590
EPG G D G G PP L +G+ G G G GP G G E G
Sbjct: 1133 EPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1192
Query: 591 SPNSHPSEELLKQPDYSDKIKQM--LVPHGLLGP----GPIANGFPPGGPG-----GPKG 639
P + L P + + + P G GP GP P G PG G G
Sbjct: 1193 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVG 1252
Query: 640 MQHFPPGPGGPMPGPHGGPGGPVGPR----LLGPP----PPPRGGDPFWDGP-GDPMRGG 690
+ P G P P G GGP G R GPP PP G P DGP G+P G
Sbjct: 1253 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP---G 1309
Query: 691 PMR--GGPGPGPGPYHRGRGGRGGN-----EPPPPPPPFRGARGGRSGGGPPNGRGGPGG 743
P+ G PGP P G+ G GG+ +P P PP G G GPP RG PG
Sbjct: 1310 PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP--GPSGEAGPPGPPGKRGPPGA 1367
Query: 744 -------GMVGGGGHRPHEGPGGGMG-----------NSSGHRPHEGPGGGMG-SGHRPH 784
G G G EGP G G G R GP G G G
Sbjct: 1368 AGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQ 1427
Query: 785 EGPGGSMG-----------GGGGHRPHEGPGG-----GISGGSGHRPHEGPGGGMGA-GG 827
+GP G MG G G + H G G G G G R G G GA G
Sbjct: 1428 DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGD 1487
Query: 828 GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVP-GHRGHDHRGPPPHEHRGHDGP 886
G P GP G +G G P PG GP G++ P G +G PP G GP
Sbjct: 1488 GGIP--GPAGPLGPPG---PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPP----GSPGP 1538
Score = 101 bits (251), Expect = 4e-21
Identities = 123/357 (34%), Positives = 141/357 (39%), Gaps = 45/357 (12%)
Query: 539 PGGSGGSPD-GAGGSKLPPVLANLMGSMGAGKGPQGPGG-----GGINVQEILTSIMGSP 592
PG G + D G G PP G GA GPQGP G GG+ ++ G+P
Sbjct: 1206 PGEKGENGDVGPMGPPGPPGPRGPQGPNGAD-GPQGPPGSVGSVGGVG-EKGEPGEAGNP 1263
Query: 593 NSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPG--GPGGPKGMQHFPPGPGGP 650
P E + P K P G GP P A G PPG GP G G FP PG P
Sbjct: 1264 GP-PGEAGVGGPKGERGEKGEAGPPGAAGP-PGAKG-PPGDDGPKGNPGPVGFPGDPGPP 1320
Query: 651 -MPGPHG--GPGGPVG----PRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPY 703
PGP G G GG G P GPP P P PG P + GP G G
Sbjct: 1321 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP----PGPPGKRGPP-GAAGAEGRQG 1375
Query: 704 HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPHEGPGGGMG 762
+G G G E PP G +G GP RG PG G G G +GP G MG
Sbjct: 1376 EKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMG 1435
Query: 763 -----------NSSGHRPHEGPGGGMGS-GHRPHEGPGGSMGGGGGHRPHEGPGGGISGG 810
S G + H G G +G G + +G G G G P GGI G
Sbjct: 1436 PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS--PGAKGDGGIPGP 1493
Query: 811 SGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVP 865
+G GP G G G G++ GP G G SG P PG GP G +P
Sbjct: 1494 AGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP---PGSPGPPGEVIQPLP 1547
Score = 51.2 bits (121), Expect = 4e-06
Identities = 78/273 (28%), Positives = 94/273 (34%), Gaps = 80/273 (29%)
Query: 504 PHEPDPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSG-GSPDGAGGSKLPPVLANLM 562
P +P P P EP P + + D P + PG SG P G G + PP A
Sbjct: 1314 PGDPGP-PGEPGPAGQDGVGGDKGEDGDPG-QPGPPGPSGEAGPPGPPGKRGPPGAAGAE 1371
Query: 563 GSMG-----AGKGPQGPGG--GGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLV 615
G G G +GP G G + Q P P E L+ + + +
Sbjct: 1372 GRQGEKGAKGEAGAEGPPGKTGPVGPQ--------GPAGKPGPEGLR--GIPGPVGEQGL 1421
Query: 616 PHGLLGPGPIANGFPPGGPG-----GPKGMQHFP--------PGPGGP-----MPGPHGG 657
P GP PPG PG G KG + P PG G +PG G
Sbjct: 1422 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1481
Query: 658 PG--------GPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGG 709
PG GP GP LGPP PP G PGP GP +G
Sbjct: 1482 PGAKGDGGIPGPAGP--LGPPGPP--------------------GLPGP-QGP----KGN 1514
Query: 710 RGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
+G P G +G GPP G PG
Sbjct: 1515 KGSTGP-------AGQKGDSGLPGPPGSPGPPG 1540
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 106 bits (264), Expect = 1e-22
Identities = 132/371 (35%), Positives = 152/371 (40%), Gaps = 55/371 (14%)
Query: 538 EPGGSG--GSP--DGAGGSKLPPVLANLMGSMGAGKGPQGP-----------GGGGINVQ 582
+PG G G P DG G P L+G GA KG G G G Q
Sbjct: 493 QPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGA-KGEPGEFYFDLRLKGDKGDPGFPGQ 551
Query: 583 EILTSIMGSP--NSHPSEELLKQPDYSDKIKQMLVPHGLLG-PGPIANGFPPG----GPG 635
+T GSP + HP K S +K P G +G PG + PPG GP
Sbjct: 552 PGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGYGPA 611
Query: 636 GP---KGMQHFPPGPGGP-MPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGP 691
GP KG FP GPG P +PGP G PG V P P P G + PG P G
Sbjct: 612 GPIGDKGQAGFPGGPGSPGLPGPKGEPGKIV------PLPGPPGAEGLPGSPGFPGPQGD 665
Query: 692 MRGGPG-PG-PG-PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVG 747
RG PG PG PG P +G G+ G P PP P +G G GPP G PG G+ G
Sbjct: 666 -RGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGP-KGVDGLPGDMGPPGTPGRPGFNGLPG 723
Query: 748 GGGHRPHEG-PGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGG 806
G + +G PG G+ G G G G GS+G G P E G
Sbjct: 724 NPGVQGQKGEPGVGLPGLKGLPGLPGIPG--------TPGEKGSIGVPG--VPGEHGAIG 773
Query: 807 ISGGSGHRPHEGPGGGMGA-GGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHR-PHDV 864
G G R GP G G+ G P GP G+ G GG P PG GP G +
Sbjct: 774 PPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGP---PGLSGPPGIKGEKGF 830
Query: 865 PGHRGHDHRGP 875
PG G D GP
Sbjct: 831 PGFPGLDMPGP 841
Score = 87.0 bits (214), Expect = 7e-17
Identities = 102/319 (31%), Positives = 112/319 (35%), Gaps = 58/319 (18%)
Query: 622 PGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGP------------ 669
PGP + PPG PG G+ PGP PG G PG P P +G
Sbjct: 413 PGPPGSPGPPGQPGYTNGIVECQPGP----PGDQGPPGIPGQPGFIGEIGEKGQKGESCL 468
Query: 670 ---------PPPPRGGDPFWDGPGDP----MRGGPMRGG----PGPGPGPYHRGRGGRGG 712
PP P+G PG P RG P R G PGP P G+ G G
Sbjct: 469 ICDIDGYRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKG 528
Query: 713 NEPPPPPPPFRGARGGRSGGGPPNGRGGPG----GGMVGGGGHRPHEGPGGGMGNSSGHR 768
P F + G P G PG G G GH GP G G S G +
Sbjct: 529 E-----PGEFYFDLRLKGDKGDPGFPGQPGMTGRAGSPGRDGHPGLPGPKGSPG-SVGLK 582
Query: 769 PHEGPGGGMG-SGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGG 827
GP GG+G G R GP G G G + G GG G GP G G
Sbjct: 583 GERGPPGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGP---KGEPG 639
Query: 828 GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPG 887
P GP G+ G G PG GP G R G G R P E PG
Sbjct: 640 KIVPLPGPPGAEGLPG------SPGFPGPQGDR-----GFPGTPGRPGLPGEKGAVGQPG 688
Query: 888 HGGGGHRGHDGGHSHGGDM 906
G G G G GDM
Sbjct: 689 IGFPGPPGPKGVDGLPGDM 707
Score = 85.9 bits (211), Expect = 2e-16
Identities = 130/435 (29%), Positives = 163/435 (37%), Gaps = 77/435 (17%)
Query: 539 PGGSG--GSPDGAGGSKLP--PVLANLMGSMGAG----KGPQG-PGGGGINVQEILTSIM 589
PG G G+P G + LP P + G G G KG G PG G ++ +
Sbjct: 704 PGDMGPPGTPGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVP 763
Query: 590 GSPNSH-----PSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGP------- 637
G P H P + ++ + + G+ G GP PPGG G P
Sbjct: 764 GVPGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPG 823
Query: 638 -KGMQHFPPGPGGPMPGPHGGPGGPVGPRLLG----PPPPPRGGDPFWDG-PGDPMRGGP 691
KG + FP PG MPGP G G P + G P P + G P G PG G
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 883
Query: 692 M-----RGGPGP--GPG-PYHRGRGGRGGNEPPPPPPPFRGARG-----GRSGG------ 732
M G PGP PG P +G G G+ P P +G +G G+ G
Sbjct: 884 MGTPGQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDM 943
Query: 733 GPPNGRGGPGG-----GMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGSGHRPH- 784
G G+ G G G +G G R G G G +G GP G G P
Sbjct: 944 GSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGA 1003
Query: 785 ---EGPGGSMGGGG--------GHRPHEGPGG--GISGGSGHRPHEGPGGGMGAG-GGHR 830
GP GS+GG G G GP G G+ G G + +G G G G G R
Sbjct: 1004 PGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLR 1063
Query: 831 PHEGPGGSMG--GSGGHRPHEG----PGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHD 884
+G G G GS G + +G PG G G + PG G+ P E
Sbjct: 1064 GEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLK--GSPGSVGYPGSPGLPGEKGDKG 1121
Query: 885 GPGHGG-GGHRGHDG 898
PG G G +G G
Sbjct: 1122 LPGLDGIPGVKGEAG 1136
Score = 82.4 bits (202), Expect = 2e-15
Identities = 119/380 (31%), Positives = 141/380 (37%), Gaps = 51/380 (13%)
Query: 541 GSGGSPDGAGGSKLP--PVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
GS G G +P P L GS G+ P PG G + L + G P
Sbjct: 1076 GSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEA 1135
Query: 599 ELLKQPDYSDKIKQMLVP--HGLLG-------PGPIANGFP--PGGPG--GPKGMQHFPP 645
L P + Q P G+ G PG GFP PG G G KG FP
Sbjct: 1136 GLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPG 1195
Query: 646 GPGGP-MPGPHG-----GPGGPVG-PRLLGPP----PPPRGGDPFWDGPGDPMRGGPMRG 694
G P +PG G GP GP G P L G P P+G PG P GPM
Sbjct: 1196 LAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGLPGPM-- 1253
Query: 695 GPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG----GGMVGGGG 750
GP P G G GN P P G +G G P G PG G +G G
Sbjct: 1254 --GPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPG 1311
Query: 751 HRPHEGPGG--GMGNSSGHRPHEGPGGGMGSGHRPHE-GPGGSMGGGGGHRPHEGPGG-- 805
+GP G G+ G + +G G G P GP + G G EGP G
Sbjct: 1312 VPGFQGPKGLPGLQGIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEGPPGLK 1371
Query: 806 GISGGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHR 860
G+ G G + +G G +G G G G G MG +G P PG GP G
Sbjct: 1372 GLQGLPGPKGQQGVTGLVGIPGPPGIPGFDGAPGQKGEMGPAGPTGPRGFPGPPGPDG-- 1429
Query: 861 PHDVPGHRGHDHRGPPPHEH 880
+PG G G P +H
Sbjct: 1430 ---LPGSMGPP--GTPSVDH 1444
Score = 79.7 bits (195), Expect = 1e-14
Identities = 121/397 (30%), Positives = 138/397 (34%), Gaps = 98/397 (24%)
Query: 628 GFP----PGGPGGPKGMQHFPPGPGGP-------MPGPHGGPGGPVGPRLL---GPPPPP 673
GFP P GP GP G + PG P PG G PG P P + GPP PP
Sbjct: 61 GFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPP 120
Query: 674 -----------RG--GDP----FWDGPGDPMRGGPMRGGPG------PG---------PG 701
RG G P F PG P G M+G PG PG PG
Sbjct: 121 GIPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPG-MKGDPGEILGHVPGMLLKGERGFPG 179
Query: 702 -PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGG 760
P G G G + P PP F G G GPP +G G G G + +G G
Sbjct: 180 IPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGP 239
Query: 761 MG-------------NSSGHRPHEGPGG-----GMGSGHRPHE-GPGGSMGGGGGHRPHE 801
G + G + +G G G+G P + GP G G G
Sbjct: 240 PGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKG 299
Query: 802 GPG-GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSG--GHRPHEG-PGHGGPH 857
PG G G G +GP G G G GP G + G+G G + G PG GP
Sbjct: 300 SPGFPGEPGYPGLIGRQGPQGEKGEAG----PPGPPGIVIGTGPLGEKGERGYPGTPGPR 355
Query: 858 GH-RPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGG----GHRGHDGGHSHGGDMSNRPVC 912
G P PG G GPP G PG G G RG G G P
Sbjct: 356 GEPGPKGFPGLPGQP--GPP-----GLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSG 408
Query: 913 RHFM--------MKGNCRYEN---NCAFYHPGVNGPP 938
R + G Y N C PG GPP
Sbjct: 409 RDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPP 445
Score = 78.6 bits (192), Expect = 3e-14
Identities = 133/458 (29%), Positives = 158/458 (34%), Gaps = 116/458 (25%)
Query: 539 PGGSGGSPDGAGGSKLP--PVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
P G G P G + P P G GA P PG GI Q+ G P +
Sbjct: 68 PEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNG 127
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG------------------GPK 638
++ + L P GL PG N PPG PG G +
Sbjct: 128 TKGE----------RGPLGPPGL--PGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGER 175
Query: 639 GMQHFPPGPGGP----MPGPHGGPG--GPVGPRLLGPPPPP----------------RGG 676
G P PG P + GP G PG GP GP GPP PP +G
Sbjct: 176 GFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPP--GPPGPPGEKGQMGLSFQGPKGDKGD 233
Query: 677 DPFWDGPGDP------------------MRGGP-MRGGPGPG-------PGPYHRGRGGR 710
PG P +G P +G PG G PGP RG+ G+
Sbjct: 234 QGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGP--RGKPGK 291
Query: 711 GGNEPPPPPPPFRGARG-----GRSGGGPPNGRGGPGG--GMVGGGGHRPHEGPGGGMGN 763
G++ P F G G GR G G GP G G+V G G +G G G
Sbjct: 292 DGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPG- 350
Query: 764 SSGHRPHEGPGGGMGSGHRPHEGPG----GSMGGGG--GHRPHEG----PGGGISGGSGH 813
+ G R GP G G +P PG G G G G R +G PG + G SG
Sbjct: 351 TPGPRGEPGPKGFPGLPGQPGP-PGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGR 409
Query: 814 RPHEGPGGGMGAGG--GH-----RPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPH---- 862
GP G G G G+ GP G G G G G G +
Sbjct: 410 DGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQPGFIGEIGEKGQKGESCLI 469
Query: 863 -DVPGHRGHDHRGPPPHEHRGHDGPG-HGGGGHRGHDG 898
D+ G+RG PP E PG G G G DG
Sbjct: 470 CDIDGYRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDG 507
Score = 75.1 bits (183), Expect = 3e-13
Identities = 125/406 (30%), Positives = 148/406 (36%), Gaps = 58/406 (14%)
Query: 541 GSGGSPDGAGGSKLPPVLANLMGSMG--AGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
G G P G G + P L G+ G GP G G G+ ++ I G P S P E
Sbjct: 1023 GEKGVP-GIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGS-PGE 1080
Query: 599 ELLKQPDYSDKIKQMLVPHGLLG-PGPIANGFPPGGPG--GPKGMQHFPPGPGGPMPGPH 655
K S I M GL G PG + PG PG G KG+ PG G +PG
Sbjct: 1081 ---KGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGL----PGLDG-IPGVK 1132
Query: 656 GGPGGPVGPRLLGPPPPPRGGDPFWDG----------PGDPMRGGPMRGGPGPGPGPYHR 705
G G P P GP + G+P DG PG P RG P G PG +
Sbjct: 1133 GEAGLPGTPGPTGPAG--QKGEPGSDGIPGSAGEKGEPGLPGRGFP--GFPGAKGDKGSK 1188
Query: 706 GRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSS 765
G G G P P +G +G GP G PG G + GP G G
Sbjct: 1189 GEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPG 1248
Query: 766 GHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG----GGISGGSGHRPHEGPGG 821
P PG G + +G G G G P PG GI G G +G G
Sbjct: 1249 LPGPMGPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMG 1308
Query: 822 GMGAGGGHRPHEGPG-----GSMGGSGGHRPHEGPGHGGPHGHRPHDV----PGHRGHDH 872
G G P PG G G G PG GP G P+D+ PG G +
Sbjct: 1309 PPGVPGFQGPKGLPGLQGIKGDQGDQGVPGAKGLPGPPGPPG--PYDIIKGEPGLPGPE- 1365
Query: 873 RGPPPHEH-RGHDGPG-----------HGGGGHRGHDGGHSHGGDM 906
GPP + +G GP G G G DG G+M
Sbjct: 1366 -GPPGLKGLQGLPGPKGQQGVTGLVGIPGPPGIPGFDGAPGQKGEM 1410
Score = 72.8 bits (177), Expect = 1e-12
Identities = 138/483 (28%), Positives = 165/483 (34%), Gaps = 136/483 (28%)
Query: 539 PGGSG--GSPD-----GAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGS 591
PG SG G+P G G PP + G+ G +GP GP G L G+
Sbjct: 96 PGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGE-RGPLGPPG--------LPGFAGN 146
Query: 592 PNSHPSEELLKQP-DYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--GPKGMQHF--PPG 646
P + P + + ML+ PG PPG PG GP G F PPG
Sbjct: 147 PGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPG 206
Query: 647 PGGPMPGPHGGPG-------GPVGPR----LLGPPPPP------------------RGGD 677
P GP PGP G G GP G + + GPP P + G+
Sbjct: 207 PPGP-PGPPGEKGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGE 265
Query: 678 PFWDG------PGDPMRGGPMRGGPG----------PG-PG-PYHRGRGGRGG-----NE 714
P + G G+P + GP RG PG PG PG P + G GR G E
Sbjct: 266 PGFQGMPGVGEKGEPGKPGP-RGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGE 324
Query: 715 PPPPPPP----------------FRGARGGRSGGGP------PNGRGGPG------GGMV 746
PP PP + G G R GP P G PG G
Sbjct: 325 AGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAP 384
Query: 747 GGGGHRPHEG----PGGGMGNSSGHRPHEGPGGGMGSGHRP---------HEGPGGSMGG 793
G G R +G PG + SG GP G G +P GP G G
Sbjct: 385 GFPGERGEKGDRGFPGTSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGP 444
Query: 794 GG-----------GHRPHEGPGGGISGGSGHRPHEGPGGGMGAGG-----GHRPHEGPGG 837
G G + +G I G+R GP G G G G + G G
Sbjct: 445 PGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGAKGDRGLPG 504
Query: 838 SMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDG-PG-HGGGGHRG 895
G +G P PG G G + PG D R G G PG G G G
Sbjct: 505 RDGVAGVPGPQGTPGLIGQPGAKGE--PGEFYFDLRLKGDKGDPGFPGQPGMTGRAGSPG 562
Query: 896 HDG 898
DG
Sbjct: 563 RDG 565
Score = 68.6 bits (166), Expect = 3e-11
Identities = 87/277 (31%), Positives = 101/277 (36%), Gaps = 34/277 (12%)
Query: 633 GPGGPKGMQHFPPGPGGPMPGPHGGPG--GPVGPRLLGPPPPPRGGDPFWDGPGDPMRGG 690
G G KG + P + G G PG GP GP+ PP + GD PG P G
Sbjct: 43 GVKGQKGERGLPG-----LQGVIGFPGMQGPEGPQ----GPPGQKGDT--GEPGLPGTKG 91
Query: 691 PMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGG 750
RG PG P + G G G + PP PP G G + GP G P G G G
Sbjct: 92 T-RGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLP--GFAGNPG 148
Query: 751 HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG--GHRPHEGPGGGIS 808
G G G GH P G + G R G G+ G G G + GP G +
Sbjct: 149 PPGLPGMKGDPGEILGHVP-----GMLLKGERGFPGIPGTPGPPGLPGLQGPVGP-PGFT 202
Query: 809 GGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHR 868
G G GP G G G +GP G G G P PG G +
Sbjct: 203 GPPGPPGPPGPPGEKGQMG--LSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEK 260
Query: 869 GHDHRGPPPHEHRGHDG-PGHGGGGHRGHDGGHSHGG 904
G +G P G G PG G G G G G
Sbjct: 261 G--QKGEP-----GFQGMPGVGEKGEPGKPGPRGKPG 290
Score = 54.7 bits (130), Expect = 4e-07
Identities = 67/217 (30%), Positives = 77/217 (35%), Gaps = 17/217 (7%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQ------EILTSIMGSP 592
P G G P G G PP L + G G P PG G+ + + I GSP
Sbjct: 1240 PQGQPGLP-GLPGPMGPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSP 1298
Query: 593 NSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMP 652
S+ + P + P GL G I G G KG+ PPGP GP
Sbjct: 1299 GITGSKGDMGPPG----VPGFQGPKGLPGLQGIKGDQGDQGVPGAKGLPG-PPGPPGPYD 1353
Query: 653 GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGG 712
G PG P GP PP G GP + G PGP P G G+ G
Sbjct: 1354 IIKGEPGLP-GPE----GPPGLKGLQGLPGPKGQQGVTGLVGIPGPPGIPGFDGAPGQKG 1408
Query: 713 NEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGG 749
P P RG G G P G PG V G
Sbjct: 1409 EMGPAGPTGPRGFPGPPGPDGLPGSMGPPGTPSVDHG 1445
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 106 bits (264), Expect = 1e-22
Identities = 153/483 (31%), Positives = 181/483 (37%), Gaps = 84/483 (17%)
Query: 470 PSPLVTPGSNSQERYIQAEREKGILQELFL----NKESPHEPDPEPYEPIPPKLIPLDEE 525
P P PG Q I KG + ++ E P P P +P P L P +
Sbjct: 1005 PGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGL-PGQKG 1063
Query: 526 CSMDETPYVETL----------EPG--GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG 573
D P + ++ EPG G G+P G GS P L L G+ GA KG G
Sbjct: 1064 DKGD--PGISSIGLPGLPGPKGEPGLPGYPGNP-GIKGSVGDPGLPGLPGTPGA-KGQPG 1119
Query: 574 ----------PGGGGINVQEILTSIMGSPN-----SHPSEELLKQPDYSDKIKQMLVP-- 616
PG GI+ + G P HP + P K Q +P
Sbjct: 1120 LPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP--GPPGEKGKPGQDGIPGP 1177
Query: 617 ---HGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGP-MPGPHGGPGGPVGPRLLGPP 670
G G N PPG PG G KG P PG P +PGP G PG P + GPP
Sbjct: 1178 AGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPP 1237
Query: 671 PPPRGGDPFWDGP-------GDPMRGGP--MRGGPGPGPGPYHRGRGGRGGNEPPPPPPP 721
PP P +GP G P R GP +G PGP P G GG G + P P
Sbjct: 1238 GPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPG 1297
Query: 722 FRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMG 778
G G + GPP +G PG G+ G G G G GM SG GP G G
Sbjct: 1298 LPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPG 1357
Query: 779 SGHRPHEGPGGSMGGGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRPHEGPG 836
P GP G G G +G G GI G G + GP G G G GP
Sbjct: 1358 LIGPP--GPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGP----TGPP 1411
Query: 837 GSMGGSGGHRPHEGPGHGGPHGHRPHD-VPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRG 895
G G +G PG G G + +PG G RG DGP G G +G
Sbjct: 1412 GDPGRNGL------PGFDGAGGRKGDPGLPGQPGT----------RGLDGP-PGPDGLQG 1454
Query: 896 HDG 898
G
Sbjct: 1455 PPG 1457
Score = 103 bits (256), Expect = 1e-21
Identities = 141/443 (31%), Positives = 166/443 (37%), Gaps = 94/443 (21%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG----PGGGGINVQEILTSIMGSPNS 594
P G+ G P G G PP L +G MG GPQG PG G+ Q GSP
Sbjct: 1007 PKGNPGLP-GQPGLIGPPGLKGTIGDMGF-PGPQGVEGPPGPSGVPGQP------GSPGL 1058
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLG-PGPIANGFPPGGPGGP--KGMQHFPPGPGGP- 650
P ++ DK + GL G PGP PG PG P KG P PG P
Sbjct: 1059 -PGQK-------GDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG 1110
Query: 651 MPGPHGGPGGPVGPRLLGPPPPPR----GGDPFWDGPGDPMRGGPMRGGPGPG------- 699
PG G PG P P GPP P G+P G P+ GG G PGP
Sbjct: 1111 TPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPG 1170
Query: 700 ----PGPY-HRGRGGRGG-NEPPPPPPPFRGARGGRSGGGPPNGRGGPG-------GGMV 746
PGP +G G+ G P PP P G G + GG P G PG G
Sbjct: 1171 QDGIPGPAGQKGEPGQPGFGNPGPPGLP--GLSGQKGDGGLPGIPGNPGLPGPKGEPGFH 1228
Query: 747 GGGGHRPHEGPGGGMGNS-SGHRPHEGPGGGMG----SGHRPHEGPGGSMG--GGGGHRP 799
G G + GP G G + G + + GP G G +G + GP G G G GG +
Sbjct: 1229 GFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKG 1288
Query: 800 HEGPGG--GISGGSGHRPHEGPGGGMGAGG-----GHRPHEGPGGSMGGSGGHRPHEGPG 852
+G G G+ G G + +GP G G G G + G G G G P PG
Sbjct: 1289 EKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPG 1348
Query: 853 HGGPHGH-------RPHDVPGHRGHD-----HRGPP-------------PHEHRGHDGP- 886
GP G P +PG G GPP P +G GP
Sbjct: 1349 SAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPT 1408
Query: 887 ----GHGGGGHRGHDGGHSHGGD 905
G G G DG GD
Sbjct: 1409 GPPGDPGRNGLPGFDGAGGRKGD 1431
Score = 98.2 bits (243), Expect = 3e-20
Identities = 127/372 (34%), Positives = 145/372 (38%), Gaps = 63/372 (16%)
Query: 539 PGGSG--GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
PG G GS G P + G +G+ P PG G Q+ L + G P P
Sbjct: 535 PGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG-PKGEP 593
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPGGPKGMQHFPPGPGGP-MPGP 654
K + G +GP GP GF P GP G KG+Q PG P +PGP
Sbjct: 594 GGITFKGERGPPGNPGLPGLPGNIGPMGP--PGFGPPGPVGEKGIQGVAGNPGQPGIPGP 651
Query: 655 HGGPG------------------GPVG----PRLLGPPP----PPRGGDPFWDGPGDPMR 688
G PG G VG P L G P P G+P G G P
Sbjct: 652 KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGP 711
Query: 689 GGPMRGGPG-PGPGPYHRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRGGPG-GG 744
GP +G PG PGP P G GR G E PP PP F G +G G + GPP G PG G
Sbjct: 712 PGP-KGFPGIPGP-PGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKG 769
Query: 745 MVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEG-- 802
+G G R GP GP G G P GP G +G G P
Sbjct: 770 ALGPKGDRGFPGP-------------PGPPGRTGLDGLP--GPKGDVGPNGQPGPMGPPG 814
Query: 803 -PGGGISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGG-SMGGSGGHRPHEG-PGHGGPH 857
PG G+ G G GP G G G G + GP G + G G R G PG GP
Sbjct: 815 LPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPI 874
Query: 858 GHRPHDVPGHRG 869
G P PG G
Sbjct: 875 G--PPGSPGLPG 884
Score = 97.4 bits (241), Expect = 5e-20
Identities = 166/532 (31%), Positives = 188/532 (35%), Gaps = 143/532 (26%)
Query: 538 EPGGSG----------GSP--DGAGGSKLPPVLANLMGSMGAG-----------KGPQGP 574
+PG G GSP GA G PP L G GA GP GP
Sbjct: 847 DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGP 906
Query: 575 GGG-GINVQEILTSIMGSPNSHPSEELLKQPDYSDKI--KQMLVPHGLLG-PGPI----- 625
G GI + G P + L QP K GL G PGP+
Sbjct: 907 PGPLGIPGRS------GVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLL 960
Query: 626 ----ANGFP--PGGPG--GPKGMQHFPPGPGGP----------MPGPHGGPGGPVGPRLL 667
G P PG PG GPKG Q P PG P PGP G PG P P L+
Sbjct: 961 GSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLI 1020
Query: 668 GPP-----------PPPRG--------------------------GDPFWDGPGDPMRGG 690
GPP P P+G GDP G P G
Sbjct: 1021 GPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPG 1080
Query: 691 PMRGGPG-PG-PG----------PYHRGRGGRGGNEPPPPPPPFRGARG--GRSG-GGPP 735
P +G PG PG PG P G G G + P P F G G G G GPP
Sbjct: 1081 P-KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPP 1139
Query: 736 NGRGGPG-GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRP---HEGPGGSM 791
G PG G VGGGGH GP G G G GP G G +P + GP G
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKG-KPGQDGIPGPAGQKGEPGQPGFGNPGPPGLP 1198
Query: 792 GGGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGS-----GG 844
G G +G GG GI G G +G G G G P GP GS G + G
Sbjct: 1199 GLSG----QKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGP-PGPPGSPGPALEGPKGN 1253
Query: 845 HRPHEGPGHGGPHGHR-------PHDVPGHRG-HDHRGPPPHEH-------RGHDGPGHG 889
P PG GP G + P +PG+ G +G P +G GP G
Sbjct: 1254 PGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGP-PG 1312
Query: 890 GGGHRGHDGGHSHGGDMSNRPVCRHFMMKGNCRYENNCA-FYHPGVNGPPLP 940
G+ G G + GD V MKG + PG+ GPP P
Sbjct: 1313 LQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGP 1364
Score = 79.3 bits (194), Expect = 2e-14
Identities = 92/274 (33%), Positives = 105/274 (38%), Gaps = 31/274 (11%)
Query: 633 GPGGPKGMQHFPPGPGGP-MPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDG-PGDPMRGG 690
G G KG + FP G P +PG GP GP GPR G DG PG P G
Sbjct: 42 GIKGEKGERGFPGLEGHPGLPG-FPGPEGPPGPR----------GQKGDDGIPGPPGPKG 90
Query: 691 PMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVGGG 749
+RG PG P G G G++ P P G G + G P G PG G G
Sbjct: 91 -IRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPP 149
Query: 750 GHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISG 809
G +G G + SS P PG G + GP G G G P G+ G
Sbjct: 150 GIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGP-----PGLMG 204
Query: 810 GSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG 869
G GP G MG +GP G G G P PG RP DV +G
Sbjct: 205 PPGPPGLPGPKGNMGLN-----FQGPKGEKGEQGLQGPPGPPGQISEQ-KRPIDVEFQKG 258
Query: 870 HD----HRGPP-PHEHRGHDGPGHGGGGHRGHDG 898
RGPP P RG GP G G +G G
Sbjct: 259 DQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQG 292
Score = 79.0 bits (193), Expect = 2e-14
Identities = 132/435 (30%), Positives = 159/435 (36%), Gaps = 80/435 (18%)
Query: 539 PGGSG-GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQ-----EILTSIMGSP 592
PG G P G G PP LMG G P G G+N Q + + G P
Sbjct: 179 PGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP 238
Query: 593 NSHPSEELLKQP-DYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGM--QHFPPGPGG 649
K+P D + +P PGP PPG PGG KG + PG G
Sbjct: 239 GPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRG 298
Query: 650 PMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGP--MRGGPGPGPGP----- 702
PG G G P G P P GDP + PG+P R G +G GP PGP
Sbjct: 299 -KPGKDGENGQP------GIPGLP--GDPGY--PGEPGRDGEKGQKGDTGP-PGPPGLVI 346
Query: 703 YHRGRG---GRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG---------GMVGGGG 750
G G G GN P P +G RG GPP G PG G G G
Sbjct: 347 PRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERG 406
Query: 751 HRPHEGPGG-------GMGNSSGHRPHEGPGGGMGSGHRPHE--------GPGGSMGGGG 795
+ EGP G G+ G GP G G P + GP GS G G
Sbjct: 407 QKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKG 466
Query: 796 --GHRPHEGP---------GGGISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGS 842
G + +G G GISG G G G G+ G G + +G G+ G
Sbjct: 467 LQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPK 526
Query: 843 GGHRPHEGPGHGGPHGHR--PHDV---PGHRGH--DHRGPPPHEHRGHDG-PGHGG---- 890
G PG G G + P D+ PG +G + P G G PG G
Sbjct: 527 GLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGL 586
Query: 891 GGHRGHDGGHSHGGD 905
G +G GG + G+
Sbjct: 587 PGPKGEPGGITFKGE 601
Score = 78.2 bits (191), Expect = 3e-14
Identities = 101/341 (29%), Positives = 120/341 (35%), Gaps = 66/341 (19%)
Query: 616 PHGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGPMPGPHG-----------GPGGPV 662
P GL GP A PPG PG G +G + PG +PGP G GP GP
Sbjct: 381 PPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 663 GPRL--------LGPPPPPRG----------------GDPFWDGPGDPMRGGPMRGG-PG 697
GP + GPP PP GD ++ G + G P + G PG
Sbjct: 441 GPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPG 500
Query: 698 -PGPG-----PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-----GMV 746
PGP P +G G+ G P P GA G G P +G PG GM
Sbjct: 501 LPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPG---APGFPGSKGEPGDILTFPGMK 557
Query: 747 GGGGHRPHEGPGG--GMGNSSGH-------RPHEGPGGGMGSGHRPHEGPGGSMGGGGGH 797
G G G G G+ + G P PGG G R G G G G
Sbjct: 558 GDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNI 617
Query: 798 RPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPH 857
P PG G G G + +G G G G P PG ++ G PG G
Sbjct: 618 GPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDV 677
Query: 858 GHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDG 898
G +PG G + P PG G G G G
Sbjct: 678 G-----LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPG 713
Score = 77.4 bits (189), Expect = 6e-14
Identities = 109/354 (30%), Positives = 125/354 (35%), Gaps = 71/354 (20%)
Query: 616 PHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP-------MPGP------------HG 656
P G G I P G GP G+ FP PG P PGP G
Sbjct: 73 PRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERG 132
Query: 657 GPGGPVGPRLLGPPPPP----RGGDP------FWDGP-GDPMRGGP--MRGGPGPGPGPY 703
PG P P L GPP PP G+P GP G+P GP ++G PGP P
Sbjct: 133 FPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPG 192
Query: 704 HRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRG-----GPGG------------- 743
G G G PP PP G +G G + GP +G GP G
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 744 -----GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGS-GHRPHEGPGGSMGGGGGH 797
G G G R GP G G +G G G G R G G G G
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 798 RPHEGPG-GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGP 856
PG G G G + +G G G G P G G ++G G PG G
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Query: 857 HG----HRPHDVPGHRGHDHRGPP-----PHE--HRGHDG-PGHGGGGHRGHDG 898
G P +PG G GPP P E +G +G PG G G DG
Sbjct: 373 RGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDG 426
Score = 77.0 bits (188), Expect = 8e-14
Identities = 134/459 (29%), Positives = 162/459 (35%), Gaps = 141/459 (30%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAG-----KGPQGPGGGGINVQEILTSIMGSPN 593
PG G G PP L G++G GP GP G T + G P
Sbjct: 745 PGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGR--------TGLDGLPG 796
Query: 594 SHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG----GPKGMQHFPPGPGG 649
K + P+G PGP+ PPG PG GP G PPG G
Sbjct: 797 P----------------KGDVGPNGQ--PGPMG---PPGLPGIGVQGPPG----PPGIPG 831
Query: 650 PM--PGPHGGPG---GPVGPRLLGPPPPPRGGDPFWDG----------PGDPMRGGP--- 691
P+ PG HG PG P P L P PP G P G PG P + G
Sbjct: 832 PIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGF 891
Query: 692 --------MRGGPGPGPGPYH----------RGRGGRGGNEPPPPPPPFRGARGGRSGGG 733
M G PGP PGP +G G G P P +G++G G
Sbjct: 892 PGTKGEMGMMGPPGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPG 950
Query: 734 PP-----------NGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGS 779
PP +G PG G+ G G + ++G G G SG GP G G+
Sbjct: 951 PPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGN 1010
Query: 780 GHRPHE----GPGGSMG-----GGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGG- 827
P + GP G G G G + EGP G G+ G G G G G G
Sbjct: 1011 PGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGI 1070
Query: 828 ------------------GHRPHEGPGGSMG--------GSGGHRPHEG-PGHGGPHGHR 860
G+ + G GS+G G+ G + G PG G G
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG-- 1128
Query: 861 PHDVPGHRGHDHRGPPPHEH-RGHDGPGHGGGGHRGHDG 898
PG +G GPP + G GP GGGGH G G
Sbjct: 1129 ---PPGPKGIS--GPPGNPGLPGEPGP-VGGGGHPGQPG 1161
Score = 70.9 bits (172), Expect = 5e-12
Identities = 94/307 (30%), Positives = 107/307 (34%), Gaps = 78/307 (25%)
Query: 539 PGGSGGSPDGAG-GSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
P G G P G G+ PP L L G G G P PG G L G P H
Sbjct: 1177 PAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPG------LPGPKGEPGFHGF 1230
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGP---GPIANGFPPGGPG--GPKGMQHFPPGPGGP-- 650
+ P P G GP GP N P G PG GP G Q P GP GP
Sbjct: 1231 PGVQGPPG----------PPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLP-GPEGPPG 1279
Query: 651 ------MPGPHGGPGGPVGPRLLG-----PPPPPRG-----------GDPFWDG-PGDPM 687
+ G G PG P P L G PP +G GDP G PG P
Sbjct: 1280 LPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPG 1339
Query: 688 RGGP--------------MRGGPGPG--PGPYHRGRGGRGGNEPP--PPPPPFRGARGGR 729
GP + G PGP PGP + +G PP P P +G G +
Sbjct: 1340 MKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQ 1399
Query: 730 SGGGPPNGRGGPGG-------GMVGGGGHRPHEGPGG-----GMGNSSGHRPHEGPGGGM 777
G P G PG G G GG + G G G+ G +GP G
Sbjct: 1400 GPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPP 1459
Query: 778 GSGHRPH 784
G+ H
Sbjct: 1460 GTSSVAH 1466
Score = 61.2 bits (147), Expect = 4e-09
Identities = 79/247 (31%), Positives = 90/247 (36%), Gaps = 58/247 (23%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGP----GGGGINVQEILTSIMGSPNS 594
PG + P G G + PP G G GP+GP G GGI ++ G+P
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGPTGFQGL-PGPEGPPGLPGNGGIKGEK------GNPGQ 1295
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGP-M 651
L +K P GL G PG PG G KG P PG P M
Sbjct: 1296 PGLPGL-------PGLKGDQGPPGLQGN--------PGRPGLNGMKGDPGLPGVPGFPGM 1340
Query: 652 PGPHGGPG--GPVG-PRLLGPPPPPRGGDPFWDG------------PGDP-MRGGPMRGG 695
GP G PG GP G P L+GPP PP P PG P ++G P G
Sbjct: 1341 KGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQG 1400
Query: 696 PGPGPGPY-------------HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
P PGP G GGR G+ P P RG G G G PG
Sbjct: 1401 PQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPG 1460
Query: 743 GGMVGGG 749
V G
Sbjct: 1461 TSSVAHG 1467
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 105 bits (263), Expect = 2e-22
Identities = 136/432 (31%), Positives = 158/432 (36%), Gaps = 73/432 (16%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMG--AGKGPQGPGGG-GINVQEILTSIMG--SPN 593
P G G P G G + P + G G G GP GP G G N + T G P
Sbjct: 908 PRGQRG-PTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPP 966
Query: 594 SHPSEELLK-------QPDYSDKIKQMLVPHGLLGP-GPIANGFPPG-----GPGGPKGM 640
P ++ L + + K P G++GP GP P G GP GP G
Sbjct: 967 GPPGKDGLPGHPGQRGETGFQGKTGPP-GPPGVVGPQGPTGETGPMGERGHPGPPGPPGE 1025
Query: 641 QHFP-----------PGPGGPMPGPHGGPG-----------GPVGPRLL----GPPPPPR 674
Q P PGP G +PG G PG GPVG L GPP PP
Sbjct: 1026 QGLPGLAGKEGTKGDPGPAG-LPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPG 1084
Query: 675 -GGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGG 733
G P GP + G PGP P G G G + P P G +G G
Sbjct: 1085 PAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPG 1144
Query: 734 PPNGRGGPG----GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMG-SGHRPHEGPG 788
P G PG G +G G + +G G G P +GP G G SG GP
Sbjct: 1145 PAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGP-QGPIGQPGPSGADGEPGPR 1203
Query: 789 GSMG-----GGGGHRPHEGPGG-----GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGS 838
G G G G R GP G G+ G G + G G MG G P GP G+
Sbjct: 1204 GQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGP-RGPSGA 1262
Query: 839 MGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGH----DHRGPP-PHEHRGHDGPGHGGGGH 893
G G P G G+ G G + PG G GPP P RG G G G
Sbjct: 1263 PGADGPQGPPGGIGNPGAVGEKGE--PGEAGEPGLPGEGGPPGPKGERGEKGES-GPSGA 1319
Query: 894 RGHDGGHSHGGD 905
G G GD
Sbjct: 1320 AGPPGPKGPPGD 1331
Score = 104 bits (260), Expect = 3e-22
Identities = 153/459 (33%), Positives = 170/459 (37%), Gaps = 95/459 (20%)
Query: 502 ESPHEPDPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSGG-SPDGAGGSKLPPVLAN 560
E H DP P P P + + P EPG G P G G PP +
Sbjct: 641 EKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTG 700
Query: 561 LMGSMG--AGKGPQG-PGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPH 617
+ G G GPQG PG G +P + L P + P
Sbjct: 701 MDGQPGPKGNVGPQGEPGPPG-------------QQGNPGAQGLPGPQGAIGPPGEKGPL 747
Query: 618 GLLG-PG-PIANGFPPGGPG-----GPKGMQHFPPGPGGPM--PGPHGGPG--------- 659
G G PG P A+G PPG PG G KG Q PPGP GP+ PGP G G
Sbjct: 748 GKPGLPGMPGADG-PPGHPGKEGPPGEKGGQG-PPGPQGPIGYPGPRGVKGADGIRGLKG 805
Query: 660 -----------------GPVGPRLLGPPPPPRGGDPFWDGPGDPM-RGGPMRGGPGP--G 699
G G R PP PRG D GP P RGGP G PGP
Sbjct: 806 TKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGED----GPEGPKGRGGP-NGDPGPLGP 860
Query: 700 PG----------PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGG 748
PG P + GR G G+ P P G +GGR G P RG G G G
Sbjct: 861 PGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGE 920
Query: 749 GGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-GGI 807
G R G G GNS G +GP G G GP G G G P PG G
Sbjct: 921 RGPRGITGKPGPKGNSGG----DGPAGPPGE-----RGPNGPQGPTGFPGPKGPPGPPGK 971
Query: 808 SGGSGHRPHEGPGGGMGAGGGHRPH--EGPGGSMGGSG--GHRPHEGPGHGGPHGHRPHD 863
G GH G G G G P GP G G +G G R H GP GP G +
Sbjct: 972 DGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGP--PGPPGEQ--G 1027
Query: 864 VPGHRGHD--HRGPPPHEHRGHDGPG--HGGGGHRGHDG 898
+PG G + P P G DGP G G RG G
Sbjct: 1028 LPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPG 1066
Score = 104 bits (260), Expect = 3e-22
Identities = 125/377 (33%), Positives = 140/377 (37%), Gaps = 91/377 (24%)
Query: 539 PGGSGGSPD-GAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
PG G + D G G PP G+ GA GPQGP GG +G+P +
Sbjct: 1236 PGEKGETGDVGQMGPPGPPGPRGPSGAPGAD-GPQGPPGG-----------IGNPGA--- 1280
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPG-----------------GPGGPKGM 640
+ + P PG G PPG GP GPKG
Sbjct: 1281 ------------VGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKG- 1327
Query: 641 QHFPPGPGGPM--PGPHGGPGGPVGPRLLGP-----PPPPRGGDPFWDGPGDPMRGGPMR 693
PPG GP PGP G PG P P GP PP +G D PG GP
Sbjct: 1328 ---PPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDD---GEPGQTGSPGPT- 1380
Query: 694 GGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG--GPGG--GMVGGG 749
G PGP P RG G G P +GA+G GPP G GP G G G
Sbjct: 1381 GEPGPSGPPGKRGPPGPAG---PEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPD 1437
Query: 750 GHRPHEGPGGGMGNSSGHRPHEGPGGGMGS----GHRPHEGPGGSMGGGG---------- 795
G R GP G G P +GP G MG G + GP G G G
Sbjct: 1438 GLRGIPGPVGEQGLPGSPGP-DGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGE 1496
Query: 796 ----GHRPHEGPGGGISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHE 849
G R GP G SG G + GP G +G G G GP G+ G SG P
Sbjct: 1497 QGEKGDRGLPGPQGS-SGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKG 1555
Query: 850 GPGHGGPHGHRPHDVPG 866
GH GP G P PG
Sbjct: 1556 EAGHPGPPG--PPGPPG 1570
Score = 103 bits (256), Expect = 1e-21
Identities = 139/406 (34%), Positives = 158/406 (38%), Gaps = 84/406 (20%)
Query: 541 GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPN--SHPSE 598
G G P G LP L G G KG GP G L G P P +
Sbjct: 1015 GHPGPPGPPGEQGLP----GLAGKEGT-KGDPGPAG--------LPGKDGPPGLRGFPGD 1061
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHG-- 656
L P + +K P G GP P G GP G+ PGP GP PGP G
Sbjct: 1062 RGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPG-RPGPQGP-PGPAGEK 1119
Query: 657 ------GPGGPVGPRLLGPP---PPPRG--GDPFWDGP----GDPMRGGPM-----RGGP 696
GP GP G L P P P G G P DG G+P + G +G P
Sbjct: 1120 GAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPP 1179
Query: 697 GP-GP-GPYHRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRGGPGG-----GMVG 747
GP GP GP G+ G G + P P RG +G G+ G P G GP G G+ G
Sbjct: 1180 GPTGPQGPI--GQPGPSGADGEPGP---RGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPG 1234
Query: 748 GGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG-----GHRPHEG 802
G + G G MG P GP G G+ +GP G GG G G + G
Sbjct: 1235 PPGEKGETGDVGQMGPPGPPGPR-GPSGAPGA-----DGPQGPPGGIGNPGAVGEKGEPG 1288
Query: 803 ----PG----GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHG 854
PG GG G G R +G G GA G P +GP G G G P PG
Sbjct: 1289 EAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGP-KGPPGDDGPKGSPGPVGFPGDP 1347
Query: 855 GPHGHRPHDVPGHRGHDHRGPPPHEHRGHDG-PGH-GGGGHRGHDG 898
GP G PG G D GPP +G DG PG G G G G
Sbjct: 1348 GPPGE-----PGPAGQD--GPP--GDKGDDGEPGQTGSPGPTGEPG 1384
Score = 102 bits (254), Expect = 2e-21
Identities = 133/407 (32%), Positives = 160/407 (39%), Gaps = 79/407 (19%)
Query: 536 TLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGP--------GGGGINVQEILTS 587
T+ P G G P G + PP L G+ G GP G GGGG +
Sbjct: 485 TMGPTGQVGDP----GERGPPGRPGLPGADGL-PGPPGTMLMLPFRFGGGGDAGSK---G 536
Query: 588 IMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLG-PGPIANGFPPGGPGGPKGMQHFPPG 646
M S ++ +L+Q + ++ P GL G PGP+ GP G G++ PG
Sbjct: 537 PMVSAQESQAQAILQQARLA--LRGPAGPMGLTGRPGPV-------GPPGSGGLKG-EPG 586
Query: 647 PGGPMPGPHG--GPGGPVGPRLLGPPPPPRGGDPFWDGP-GDPMRGGPM--RGGPGPGPG 701
GP GP G GP GP G P R G DG G P + GP RG G
Sbjct: 587 DVGPQ-GPRGVQGPPGPAG-------KPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGL 638
Query: 702 PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVGGGGHRPHEGPGG- 759
P +G G G PP PP G RG GP G PG G++G G GP G
Sbjct: 639 PGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGV 698
Query: 760 -GMGNSSGHRPHEGPGGGMG-------SGHRPHEGPGGSMGGGGGHRPHEGPG----GGI 807
GM G + + GP G G G + GP G++G G P PG G
Sbjct: 699 TGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGA 758
Query: 808 SGGSGHRPHEGPGGGMGAGGGHRP-----HEGPGGSMGGSG--------GHRPHEG-PGH 853
G GH EGP G G G P + GP G G G G + +G PG
Sbjct: 759 DGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGF 818
Query: 854 GGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGP--GHGGGGHRGHDG 898
G G + G RG GPP RG DGP G GG G G
Sbjct: 819 KGDMG-----IKGDRG--EIGPP--GPRGEDGPEGPKGRGGPNGDPG 856
Score = 100 bits (249), Expect = 6e-21
Identities = 138/459 (30%), Positives = 165/459 (35%), Gaps = 104/459 (22%)
Query: 547 DGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGI----------NVQEILTSIMGSPNSHP 596
D G+++P A+ S P G G + N+ E P S P
Sbjct: 369 DPGAGAEIPTSTADTSNSSNPAP-PPGEGADDLEGEFTEETIRNLDENYYDPYYDPTSSP 427
Query: 597 SEELLKQPDYSDKIKQMLV-PHGLLG----PGPIANGFPPGGPGGPKGMQHF--PPGPGG 649
SE P D I + + P G G P I G GP GP+G PPG G
Sbjct: 428 SEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMG 487
Query: 650 PM-----PGPHGGPGGPVGPRLLGPPPPP-----------RGGDPFWDGP---------- 683
P PG G PG P P G P PP GGD GP
Sbjct: 488 PTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQ 547
Query: 684 ------GDPMRG--GPM--RGGPGPGPGPYHRGRGGRGGNEPP--------PPPPPFRGA 725
+RG GPM G PGP P G G G+ P PP P +
Sbjct: 548 AILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPG 607
Query: 726 RGGRSGG----------GPPNGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEG 772
R GR+G GP RG G G+ G GHR GP G G G R +G
Sbjct: 608 RRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDG 667
Query: 773 PGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHEGPGGGMGAGG---- 827
G G P GP G +G G P PG G+ G G + + GP G G G
Sbjct: 668 EVGPRGLPGEP--GPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGN 725
Query: 828 -GHRPHEGPGGSMGGSGGHRP------HEGPGHGGPHGHRPHD-VPGHRGHDHRGPP-PH 878
G + GP G++G G P PG GP GH + PG +G +GPP P
Sbjct: 726 PGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKG--GQGPPGPQ 783
Query: 879 EHRGHDGPG-----------HGGGGHRGHDGGHSHGGDM 906
G+ GP G G +G DG GDM
Sbjct: 784 GPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDM 822
Score = 55.5 bits (132), Expect = 2e-07
Identities = 72/223 (32%), Positives = 82/223 (36%), Gaps = 46/223 (20%)
Query: 464 PRPLVLPSPLVTPGSNSQERYIQAER---EKGILQELFLN----KESPHEPDPEPYEPIP 516
P P P P PG E EKG E L K P P P +P P
Sbjct: 1377 PGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGP 1436
Query: 517 PKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGG 576
L + P E PG G PDG G PP L L G G KG +G G
Sbjct: 1437 DGLRGIPG-------PVGEQGLPGSPG--PDGPPGPMGPPGLPGLKGDSGP-KGEKGHPG 1486
Query: 577 GGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGG 636
L ++G P +Q + D+ + P G GP P GP G
Sbjct: 1487 --------LIGLIGPPG--------EQGEKGDR--GLPGPQGSSGPKGEQGITGPSGPIG 1528
Query: 637 PKGMQHFPPGPGGPMPGPHGGPG--GPVGPR----LLGPPPPP 673
P G PPG GP PGP G G GP GP+ GPP PP
Sbjct: 1529 PPG----PPGLPGP-PGPKGAKGSSGPTGPKGEAGHPGPPGPP 1566
Score = 43.1 bits (100), Expect = 0.001
Identities = 86/331 (25%), Positives = 94/331 (28%), Gaps = 113/331 (34%)
Query: 700 PGPYHRGRGGRGGNEPPPPPPPFRGAR--------GGRSGGGPPNGRGGP---------- 741
P PY G G P P P GA S PP G G
Sbjct: 349 PSPYDDLTYGEGEENPDQPTDPGAGAEIPTSTADTSNSSNPAPPPGEGADDLEGEFTEET 408
Query: 742 ----------------------GGGM--------VGGGGHRPHEGPGGGMGNSSGHRPHE 771
G GM G GG R +G G E
Sbjct: 409 IRNLDENYYDPYYDPTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIE 468
Query: 772 GPGGGMGSGHRPHEGPGGSMGGGG--GHRPHEGPGG--GISGGSGHRPHEGP-------- 819
GP G G P GP G+MG G G GP G G+ G G G
Sbjct: 469 GPPGPEGPAGLP--GPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRF 526
Query: 820 GGGMGAGG------------------GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRP 861
GGG AG GP G MG +G P PG GG G P
Sbjct: 527 GGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKG-EP 585
Query: 862 HDVPGHRGHDHRGPP-------PHEHRGHDG----PGH-GGGGHRGHDGGHSHGGDMSNR 909
DV +GPP G DG PG G G RG DG G+ +R
Sbjct: 586 GDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHR 645
Query: 910 PVCRHFMMKGNCRYENNCAFYHPGVNGPPLP 940
PG +GPP P
Sbjct: 646 G--------------------DPGPSGPPGP 656
Score = 31.2 bits (69), Expect = 4.7
Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 21/137 (15%)
Query: 330 PSTAKPSSPEPAPPSEAMDADRPGTPVPPVEVPELMDTASLEPGALDAKPVESPGDPNQL 389
P AK SS P EA PG P PP EV ++P + A D +QL
Sbjct: 1541 PKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEV--------IQPLPIQASRTRRNIDASQL 1592
Query: 390 TRKGRKRKSVTWPEEGKLREYFYFELDETERVNVNKIKDFGEAAKREILSDRHAFETAR- 448
G V + + + E F ++N +K E KR + + ++ T +
Sbjct: 1593 LDDGNGENYVDYAD--GMEEIF---------GSLNSLKLEIEQMKRPLGTQQNPARTCKD 1641
Query: 449 -RLSHDNMEEKVPWVCP 464
+L H + + WV P
Sbjct: 1642 LQLCHPDFPDGEYWVDP 1658
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 105 bits (261), Expect = 3e-22
Identities = 131/386 (33%), Positives = 147/386 (38%), Gaps = 43/386 (11%)
Query: 538 EPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
EPG S G+ G G P L MG G P PG G E G+P S S
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPE------GAPGSPGS 1108
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFP--PGPGGPMPGPH 655
L +P PHG LG I P G GP G+ FP PGP G + G
Sbjct: 1109 PGLPGKPG----------PHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG-IRGDQ 1157
Query: 656 GGPG--GPVGPR----LLGPPPPPRGGDPFWDGPGDPMRGGP-MRGGPGPGPGPYHRGRG 708
G G GP G + LL PP PRG GD RG P G PG G
Sbjct: 1158 GRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGD--RGAPGFPGLPGRKGAMGDAGPR 1215
Query: 709 GRGGNEPPPPPPPFRGA--RGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSG 766
G G E P PP GA G GPP RG PG G G G G S G
Sbjct: 1216 GPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKG-SMG 1274
Query: 767 HRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHEGPGGGMGA 825
H +GP G G P G G+ G G P PG G G G + + G G +G
Sbjct: 1275 HPGPKGPPGTAGDMGPP--GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP 1332
Query: 826 GGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG-HDHRGPP-PHEHRGH 883
G P +GP G G G + PG GP G PG G GPP P + G
Sbjct: 1333 PGPIGP-KGPPGVRGDPGTLKIISLPGSPGPPG-----TPGEPGMQGEPGPPGPPGNLGP 1386
Query: 884 DGPGHGGGGHRGHDGGHSHGGDMSNR 909
GP G G G G G+ N+
Sbjct: 1387 CGP-RGKPGKDGKPGTPGPAGEKGNK 1411
Score = 99.8 bits (247), Expect = 1e-20
Identities = 157/538 (29%), Positives = 187/538 (34%), Gaps = 130/538 (24%)
Query: 511 PYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLA--------NLM 562
PY P PP L L + P + G GSP G + LP L
Sbjct: 480 PYIPGPPGLPGLPGLHGVKGIPGRQGA--AGLKGSPGSPGNTGLPGFPGFPGAQGDPGLK 537
Query: 563 GSMGAGKGPQG----PGGGGINVQ---EILTSIMGSPNSH----PSEELLKQPDYSDKIK 611
G G P+G PG G+ Q + L I G+P P EL + D+
Sbjct: 538 GEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQ-- 595
Query: 612 QMLVPHGLLG----PGPIANGFPPG-GPGGPKGMQHFPPGPGGPMP-------------- 652
P G G PGP PPG GP G G+Q PG P P
Sbjct: 596 ---GPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVST 652
Query: 653 ---GPHGGPGGPVGPRLLGPPPPP----RGGDPFWDGP-GDPMRGGPMRGGPGPGPGPYH 704
GP G PG P P GPP P + GDP GP G+P G P G PGP PGP
Sbjct: 653 PVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEP--GIPGIGFPGP-PGP-- 707
Query: 705 RGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG------GGHRPHEGPG 758
+G G G + P G G G P +G P M GG G R + G
Sbjct: 708 KGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEH 767
Query: 759 G-----------------GMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG--------G 793
G G+ G GP G G R EGP G+ G G
Sbjct: 768 GEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKG 827
Query: 794 GGGHRPHEGPGG-------------GISGGSGHRPHEGPGGGMGAGG--------GHRPH 832
G R GP G G +G G H+G G +G G G
Sbjct: 828 QQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGE 887
Query: 833 EGPGGSMGGSGGHRPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPP----PHEHRGHDGPG 887
+G G MG G P PG+ G G R +PG +G RG P +G+ GP
Sbjct: 888 DGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKG--QRGTPGAKGEQGDKGNPGPS 945
Query: 888 H-----GGGGHRGHDGGHSHGGDMSNRPVCRHFMMKGNCRYENNCAFYHPGVNGPPLP 940
G G G G + G+ NR V +KG PG GPP P
Sbjct: 946 EISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGL--------PGPAGPPGP 995
Score = 86.7 bits (213), Expect = 1e-16
Identities = 129/414 (31%), Positives = 144/414 (34%), Gaps = 89/414 (21%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G+ G+P G +P V G+ GA KG QG G N PSE
Sbjct: 905 PPGNPGTPGQRGSPGIPGVKGQ-RGTPGA-KGEQGDKG----------------NPGPSE 946
Query: 599 ELLKQPDYSDKIKQMLVPHGLLG----PGPIANGFPPGGPG--GPKGMQHFPPGPGGPMP 652
S I P GL G PG N PG PG G KG+ PGP GP P
Sbjct: 947 -------ISHVIGDKGEP-GLKGFAGNPGEKGNRGVPGMPGLKGLKGL----PGPAGP-P 993
Query: 653 GPHG---GPGGPVGPRLLGPPP-------------------PPRGGDPFWDG-------P 683
GP G G P P L G P P R G P G
Sbjct: 994 GPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDK 1053
Query: 684 GDP-MRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
G+P G G PGP P G G+ G P PP G G G P G PG
Sbjct: 1054 GEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPG 1113
Query: 743 ----GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGG 795
G +G G + GP G G G GP G G G GP G G G
Sbjct: 1114 KPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETG 1173
Query: 796 GHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGG 855
R GP G G G + G G G G G+MG +G P G G
Sbjct: 1174 LLRAPPGPRGN-PGAQGAKGDRGAPGFPGL-------PGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 856 PHGHRPHDVPGHRGHDHRGPP-PHEHRGHDGPGHGGGGH----RGHDGGHSHGG 904
P G +PG G +RGPP G GP G H +G G H G
Sbjct: 1226 PPGLPGAIIPGQTG--NRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPG 1277
Score = 77.8 bits (190), Expect = 4e-14
Identities = 127/410 (30%), Positives = 148/410 (36%), Gaps = 95/410 (23%)
Query: 541 GSGGSPDGAGGSKLP-------PVLANLMGSMGAGKGPQGPGG--GGINVQEILTSIMGS 591
GS GSP AG + P P L G GA GP G G G ++V + G
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA-PGPPGEAGPRGELSVSTPVPGPPGP 660
Query: 592 PN--SHPSEELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPGGPGGPKGMQHFP- 644
P HP + P + + P GL GP G GFP GP GPKG Q FP
Sbjct: 661 PGPPGHPGPQ--GPPGIPGSLGKCGDP-GLPGPDGEPGIPGIGFP--GPPGPKGDQGFPG 715
Query: 645 ----------------------PG---------PGGP----MPGPHGGPG--GPVG-PRL 666
PG PGGP PG G G G +G P L
Sbjct: 716 TKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGL 775
Query: 667 LGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGAR 726
G P P G+ DGP RG P + GP GP R G G + P +G +
Sbjct: 776 PGLPGTP--GNEGLDGP----RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 727 GGRSGGGPPNGRGGPG------GGMVGGGGHRPHEGPGGGMGNSS--GHRPHEGPGGGMG 778
G R GP G PG G G G H+G G +G G+ GP G G
Sbjct: 830 GRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDG 889
Query: 779 ----SGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHE- 833
G GP G G G P + GI G G R G G G G P E
Sbjct: 890 VIGMMGFPGAIGPPGPPGNPG--TPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEI 947
Query: 834 ----GPGGSMG-----GSGGHRPHEG-PGHGGPHGHR----PHDVPGHRG 869
G G G G+ G + + G PG G G + P PG RG
Sbjct: 948 SHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRG 997
Score = 77.4 bits (189), Expect = 6e-14
Identities = 121/412 (29%), Positives = 145/412 (35%), Gaps = 99/412 (24%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGG----GGINVQEILTSIMGSPNS 594
P GS G G LP GPQGP G G+ + + I G P
Sbjct: 56 PPGSPGQKGFTGPEGLP--------------GPQGPKGFPGLPGLTGSKGVRGISGLPGF 101
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGP 654
S L P + P+GL+G G G KG Q FP +PG
Sbjct: 102 SGSPGLPGTPGNTG-------PYGLVGVP---------GCSGSKGEQGFPG-----LPGT 140
Query: 655 HGGPGGPVGPRLLGPP-PPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGN 713
G PG P L G P + D D GDP G P GP PGP G G
Sbjct: 141 LGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDP--GLPGAPGPQGLPGP-----PGFPGP 193
Query: 714 EPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGG-------------G 760
PP PP F G G GP +G G ++G G R +G G G
Sbjct: 194 VGPPGPPGFFGFPGAMGPRGP---KGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTG 250
Query: 761 MGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG-------GGGGHRPHEGPGG-----GIS 808
N + + +G G MG P GP G G G G +G G G
Sbjct: 251 PDNRTDLKGEKGDKGAMGEPGPP--GPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFP 308
Query: 809 GGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHE------GPGHGGPHGHR 860
G G + + G G MG G G + GP G G + + ++ PG GP G R
Sbjct: 309 GSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGAR 368
Query: 861 -------PHDVPGHRGHDHRGPPPHEHRGHDG-PG-HGGGGHRGHDGGHSHG 903
P VPG G G RG G PG G G RG G + G
Sbjct: 369 GPQGPSGPPGVPGSPGSSRPG-----LRGAPGWPGLKGSKGERGRPGKDAMG 415
Score = 77.4 bits (189), Expect = 6e-14
Identities = 120/411 (29%), Positives = 138/411 (33%), Gaps = 109/411 (26%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G G P G GSK L G++G P PG G+ Q+ G+P
Sbjct: 116 PYGLVGVP-GCSGSKGEQGFPGLPGTLGY---PGIPGAAGLKGQK------GAPAKEEDI 165
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPG--------GPGGPKGMQHF--- 643
EL + D + P GL GP GP+ PPG GP GPKG
Sbjct: 166 ELDAKGDPG--LPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVI 223
Query: 644 -------------PPGPGGPM----------------------------PGPHGGPGGPV 662
PPGP G + PGP G PG
Sbjct: 224 GHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESY 283
Query: 663 GPRLLGPPPPPRGGDPFWDG-PGDP-------MRGGP----------MRGGPGP----GP 700
G P P G P DG PG P RG P +G GP GP
Sbjct: 284 GSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGP 343
Query: 701 GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPG-G 759
Y+ +G P PP P RGARG + GPP G PG G G PG
Sbjct: 344 TEYYDTYQEKGDEGTPGPPGP-RGARGPQGPSGPPGVPGSPGSSRPGLRG-----APGWP 397
Query: 760 GMGNSSGHRPHEG------PGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG-----GIS 808
G+ S G R G PG +G G G G G +GP G G
Sbjct: 398 GLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYL 457
Query: 809 GGSGHRPHEGPGGGMGAGGGHRPH-EGPGGSMGGSGGHRPHEGPGHGGPHG 858
G G +GP G G P+ GP G G G H PG G G
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAG 508
Score = 67.0 bits (162), Expect = 8e-11
Identities = 91/285 (31%), Positives = 96/285 (33%), Gaps = 78/285 (27%)
Query: 539 PGGSGGSP--DGAGGSKLPPVLANLMGSMGA--GKGPQGPGGGGINVQEILTSIMGSPNS 594
P G G+P GA G + P L G GA GP+GP T I G P
Sbjct: 1178 PPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGP-----------TGIEGFPG- 1225
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLG---PGPIANGFPPGGPGGPKGMQHFPPGPGGPM 651
P GL G PG N PPG G P PGP GP
Sbjct: 1226 ---------------------PPGLPGAIIPGQTGNRGPPGSRGSPGA-----PGPPGP- 1258
Query: 652 PGPH-----GGPGGPVGPRLLGPP-------PPPRGGDPFWDGPGDPMRGGPMRGGPGPG 699
PG H G G P GPP PP R G PG P GP RG PG
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLG-----APGTPGLPGP-RGDPGFQ 1312
Query: 700 PGPYHRGRGGR----GGNEPPPP-----PPPFRGARGGRSGGGPPNGRGGPGGGMVGGGG 750
P +G G G PP P PP RG G P G PG G G
Sbjct: 1313 GFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPG--TPGEPG 1370
Query: 751 HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG 795
+ GP G GN P PG G GP G G G
Sbjct: 1371 MQGEPGPPGPPGNLGPCGPRGKPG---KDGKPGTPGPAGEKGNKG 1412
Score = 62.4 bits (150), Expect = 2e-09
Identities = 93/307 (30%), Positives = 107/307 (34%), Gaps = 47/307 (15%)
Query: 633 GPGGPKGMQHFPPGPGGP----------MPGPHGGPGGPVGPRLLGPPPPPRG--GDPFW 680
G G KG + FP PG P +PGP G G P P L G RG G P +
Sbjct: 43 GAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTG-SKGVRGISGLPGF 101
Query: 681 DG----PGDPMRGGP--MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR----- 729
G PG P GP + G PG +G G G P P G +G +
Sbjct: 102 SGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 730 ------SGGGPPNGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGSG 780
G P G PG G+ G G GP G G G GP G MG
Sbjct: 162 EEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGER 221
Query: 781 HRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
H+G G G G P ++G +G G GA G P GP G G
Sbjct: 222 VIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP-PGPSGLPG 280
Query: 841 GSGGHRPHEGPGHGGPHGHRPHD-VPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGG 899
S G PG G G D VPG G + G G G G G DG
Sbjct: 281 ESYGSE-KGAPGDPGLQGKPGKDGVPGFPGSE----------GVKG-NRGFPGLMGEDGI 328
Query: 900 HSHGGDM 906
GD+
Sbjct: 329 KGQKGDI 335
Score = 58.9 bits (141), Expect = 2e-08
Identities = 74/224 (33%), Positives = 87/224 (38%), Gaps = 41/224 (18%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNS--HP 596
PG G G G++ PP GS G+ P PG G +V I G S HP
Sbjct: 1227 PGLPGAIIPGQTGNRGPP------GSRGSPGAPGPPGPPGSHV----IGIKGDKGSMGHP 1276
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP-MPGPH 655
P + P G LG P G P GP G G Q FP G PG
Sbjct: 1277 G------PKGPPGTAGDMGPPGRLG-APGTPGLP--GPRGDPGFQGFPGVKGEKGNPGFL 1327
Query: 656 G--GPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGN 713
G GP GP+GP+ PP GDP ++ + G PGP P G G G
Sbjct: 1328 GSIGPPGPIGPK----GPPGVRGDP------GTLKIISLPGSPGPPGTP---GEPGMQGE 1374
Query: 714 EPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVGGGGHRPHEG 756
PP PP G G R G P G PG G G G++ +G
Sbjct: 1375 PGPPGPPGNLGPCGPR---GKPGKDGKPGTPGPAGEKGNKGSKG 1415
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 105 bits (261), Expect = 3e-22
Identities = 131/386 (33%), Positives = 147/386 (38%), Gaps = 43/386 (11%)
Query: 538 EPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
EPG S G+ G G P L MG G P PG G E G+P S S
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPE------GAPGSPGS 1108
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFP--PGPGGPMPGPH 655
L +P PHG LG I P G GP G+ FP PGP G + G
Sbjct: 1109 PGLPGKPG----------PHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG-IRGDQ 1157
Query: 656 GGPG--GPVGPR----LLGPPPPPRGGDPFWDGPGDPMRGGP-MRGGPGPGPGPYHRGRG 708
G G GP G + LL PP PRG GD RG P G PG G
Sbjct: 1158 GRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGD--RGAPGFPGLPGRKGAMGDAGPR 1215
Query: 709 GRGGNEPPPPPPPFRGA--RGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSG 766
G G E P PP GA G GPP RG PG G G G G S G
Sbjct: 1216 GPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKG-SMG 1274
Query: 767 HRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHEGPGGGMGA 825
H +GP G G P G G+ G G P PG G G G + + G G +G
Sbjct: 1275 HPGPKGPPGTAGDMGPP--GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP 1332
Query: 826 GGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG-HDHRGPP-PHEHRGH 883
G P +GP G G G + PG GP G PG G GPP P + G
Sbjct: 1333 PGPIGP-KGPPGVRGDPGTLKIISLPGSPGPPG-----TPGEPGMQGEPGPPGPPGNLGP 1386
Query: 884 DGPGHGGGGHRGHDGGHSHGGDMSNR 909
GP G G G G G+ N+
Sbjct: 1387 CGP-RGKPGKDGKPGTPGPAGEKGNK 1411
Score = 99.8 bits (247), Expect = 1e-20
Identities = 157/538 (29%), Positives = 187/538 (34%), Gaps = 130/538 (24%)
Query: 511 PYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLA--------NLM 562
PY P PP L L + P + G GSP G + LP L
Sbjct: 480 PYIPGPPGLPGLPGLHGVKGIPGRQGA--AGLKGSPGSPGNTGLPGFPGFPGAQGDPGLK 537
Query: 563 GSMGAGKGPQG----PGGGGINVQ---EILTSIMGSPNSH----PSEELLKQPDYSDKIK 611
G G P+G PG G+ Q + L I G+P P EL + D+
Sbjct: 538 GEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQ-- 595
Query: 612 QMLVPHGLLG----PGPIANGFPPG-GPGGPKGMQHFPPGPGGPMP-------------- 652
P G G PGP PPG GP G G+Q PG P P
Sbjct: 596 ---GPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVST 652
Query: 653 ---GPHGGPGGPVGPRLLGPPPPP----RGGDPFWDGP-GDPMRGGPMRGGPGPGPGPYH 704
GP G PG P P GPP P + GDP GP G+P G P G PGP PGP
Sbjct: 653 PVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEP--GIPGIGFPGP-PGP-- 707
Query: 705 RGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG------GGHRPHEGPG 758
+G G G + P G G G P +G P M GG G R + G
Sbjct: 708 KGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEH 767
Query: 759 G-----------------GMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG--------G 793
G G+ G GP G G R EGP G+ G G
Sbjct: 768 GEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKG 827
Query: 794 GGGHRPHEGPGG-------------GISGGSGHRPHEGPGGGMGAGG--------GHRPH 832
G R GP G G +G G H+G G +G G G
Sbjct: 828 QQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGE 887
Query: 833 EGPGGSMGGSGGHRPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPP----PHEHRGHDGPG 887
+G G MG G P PG+ G G R +PG +G RG P +G+ GP
Sbjct: 888 DGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKG--QRGTPGAKGEQGDKGNPGPS 945
Query: 888 H-----GGGGHRGHDGGHSHGGDMSNRPVCRHFMMKGNCRYENNCAFYHPGVNGPPLP 940
G G G G + G+ NR V +KG PG GPP P
Sbjct: 946 EISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGL--------PGPAGPPGP 995
Score = 86.7 bits (213), Expect = 1e-16
Identities = 129/414 (31%), Positives = 144/414 (34%), Gaps = 89/414 (21%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G+ G+P G +P V G+ GA KG QG G N PSE
Sbjct: 905 PPGNPGTPGQRGSPGIPGVKGQ-RGTPGA-KGEQGDKG----------------NPGPSE 946
Query: 599 ELLKQPDYSDKIKQMLVPHGLLG----PGPIANGFPPGGPG--GPKGMQHFPPGPGGPMP 652
S I P GL G PG N PG PG G KG+ PGP GP P
Sbjct: 947 -------ISHVIGDKGEP-GLKGFAGNPGEKGNRGVPGMPGLKGLKGL----PGPAGP-P 993
Query: 653 GPHG---GPGGPVGPRLLGPPP-------------------PPRGGDPFWDG-------P 683
GP G G P P L G P P R G P G
Sbjct: 994 GPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDK 1053
Query: 684 GDP-MRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
G+P G G PGP P G G+ G P PP G G G P G PG
Sbjct: 1054 GEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPG 1113
Query: 743 ----GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGG 795
G +G G + GP G G G GP G G G GP G G G
Sbjct: 1114 KPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETG 1173
Query: 796 GHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGG 855
R GP G G G + G G G G G+MG +G P G G
Sbjct: 1174 LLRAPPGPRGN-PGAQGAKGDRGAPGFPGL-------PGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 856 PHGHRPHDVPGHRGHDHRGPP-PHEHRGHDGPGHGGGGH----RGHDGGHSHGG 904
P G +PG G +RGPP G GP G H +G G H G
Sbjct: 1226 PPGLPGAIIPGQTG--NRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPG 1277
Score = 77.8 bits (190), Expect = 4e-14
Identities = 127/410 (30%), Positives = 148/410 (36%), Gaps = 95/410 (23%)
Query: 541 GSGGSPDGAGGSKLP-------PVLANLMGSMGAGKGPQGPGG--GGINVQEILTSIMGS 591
GS GSP AG + P P L G GA GP G G G ++V + G
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA-PGPPGEAGPRGELSVSTPVPGPPGP 660
Query: 592 PN--SHPSEELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPGGPGGPKGMQHFP- 644
P HP + P + + P GL GP G GFP GP GPKG Q FP
Sbjct: 661 PGPPGHPGPQ--GPPGIPGSLGKCGDP-GLPGPDGEPGIPGIGFP--GPPGPKGDQGFPG 715
Query: 645 ----------------------PG---------PGGP----MPGPHGGPG--GPVG-PRL 666
PG PGGP PG G G G +G P L
Sbjct: 716 TKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGL 775
Query: 667 LGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGAR 726
G P P G+ DGP RG P + GP GP R G G + P +G +
Sbjct: 776 PGLPGTP--GNEGLDGP----RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 727 GGRSGGGPPNGRGGPG------GGMVGGGGHRPHEGPGGGMGNSS--GHRPHEGPGGGMG 778
G R GP G PG G G G H+G G +G G+ GP G G
Sbjct: 830 GRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDG 889
Query: 779 ----SGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHE- 833
G GP G G G P + GI G G R G G G G P E
Sbjct: 890 VIGMMGFPGAIGPPGPPGNPG--TPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEI 947
Query: 834 ----GPGGSMG-----GSGGHRPHEG-PGHGGPHGHR----PHDVPGHRG 869
G G G G+ G + + G PG G G + P PG RG
Sbjct: 948 SHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRG 997
Score = 77.4 bits (189), Expect = 6e-14
Identities = 121/412 (29%), Positives = 145/412 (35%), Gaps = 99/412 (24%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGG----GGINVQEILTSIMGSPNS 594
P GS G G LP GPQGP G G+ + + I G P
Sbjct: 56 PPGSPGQKGFTGPEGLP--------------GPQGPKGFPGLPGLTGSKGVRGISGLPGF 101
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGP 654
S L P + P+GL+G G G KG Q FP +PG
Sbjct: 102 SGSPGLPGTPGNTG-------PYGLVGVP---------GCSGSKGEQGFPG-----LPGT 140
Query: 655 HGGPGGPVGPRLLGPP-PPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGN 713
G PG P L G P + D D GDP G P GP PGP G G
Sbjct: 141 LGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDP--GLPGAPGPQGLPGP-----PGFPGP 193
Query: 714 EPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGG-------------G 760
PP PP F G G GP +G G ++G G R +G G G
Sbjct: 194 VGPPGPPGFFGFPGAMGPRGP---KGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTG 250
Query: 761 MGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG-------GGGGHRPHEGPGG-----GIS 808
N + + +G G MG P GP G G G G +G G G
Sbjct: 251 PDNRTDLKGEKGDKGAMGEPGPP--GPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFP 308
Query: 809 GGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHE------GPGHGGPHGHR 860
G G + + G G MG G G + GP G G + + ++ PG GP G R
Sbjct: 309 GSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGAR 368
Query: 861 -------PHDVPGHRGHDHRGPPPHEHRGHDG-PG-HGGGGHRGHDGGHSHG 903
P VPG G G RG G PG G G RG G + G
Sbjct: 369 GPQGPSGPPGVPGSPGSSRPG-----LRGAPGWPGLKGSKGERGRPGKDAMG 415
Score = 77.4 bits (189), Expect = 6e-14
Identities = 120/411 (29%), Positives = 138/411 (33%), Gaps = 109/411 (26%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G G P G GSK L G++G P PG G+ Q+ G+P
Sbjct: 116 PYGLVGVP-GCSGSKGEQGFPGLPGTLGY---PGIPGAAGLKGQK------GAPAKEEDI 165
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPG--------GPGGPKGMQHF--- 643
EL + D + P GL GP GP+ PPG GP GPKG
Sbjct: 166 ELDAKGDPG--LPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVI 223
Query: 644 -------------PPGPGGPM----------------------------PGPHGGPGGPV 662
PPGP G + PGP G PG
Sbjct: 224 GHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESY 283
Query: 663 GPRLLGPPPPPRGGDPFWDG-PGDP-------MRGGP----------MRGGPGP----GP 700
G P P G P DG PG P RG P +G GP GP
Sbjct: 284 GSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGP 343
Query: 701 GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPG-G 759
Y+ +G P PP P RGARG + GPP G PG G G PG
Sbjct: 344 TEYYDTYQEKGDEGTPGPPGP-RGARGPQGPSGPPGVPGSPGSSRPGLRG-----APGWP 397
Query: 760 GMGNSSGHRPHEG------PGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG-----GIS 808
G+ S G R G PG +G G G G G +GP G G
Sbjct: 398 GLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYL 457
Query: 809 GGSGHRPHEGPGGGMGAGGGHRPH-EGPGGSMGGSGGHRPHEGPGHGGPHG 858
G G +GP G G P+ GP G G G H PG G G
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAG 508
Score = 72.8 bits (177), Expect = 1e-12
Identities = 99/310 (31%), Positives = 106/310 (34%), Gaps = 81/310 (26%)
Query: 539 PGGSGGSP--DGAGGSKLPPVLANLMGSMGA--GKGPQGPGGGGINVQEILTSIMGSPNS 594
P G G+P GA G + P L G GA GP+GP T I G P
Sbjct: 1178 PPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGP-----------TGIEGFPG- 1225
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLG---PGPIANGFPPGGPGGPKGMQHFPPGPGGPM 651
P GL G PG N PPG G P PGP GP
Sbjct: 1226 ---------------------PPGLPGAIIPGQTGNRGPPGSRGSPGA-----PGPPGP- 1258
Query: 652 PGPH-----GGPGGPVGPRLLGPP-------PPPRGGDPFWDGPGDPMRGGPMRGGPGPG 699
PG H G G P GPP PP R G PG P GP RG PG
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLG-----APGTPGLPGP-RGDPGFQ 1312
Query: 700 PGPYHRGRGGR----GGNEPPPP-----PPPFRGARGGRSGGGPPNGRGGPGGGMVGGGG 750
P +G G G PP P PP RG G P G PG G G
Sbjct: 1313 GFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPG--TPGEPG 1370
Query: 751 HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG--GIS 808
+ GP G GN P PG G GP G G G + GP G G+
Sbjct: 1371 MQGEPGPPGPPGNLGPCGPRGKPG---KDGKPGTPGPAGEKGNKGS-KGEPGPAGSDGLP 1426
Query: 809 GGSGHRPHEG 818
G G R G
Sbjct: 1427 GLKGKRGDSG 1436
Score = 62.4 bits (150), Expect = 2e-09
Identities = 93/307 (30%), Positives = 107/307 (34%), Gaps = 47/307 (15%)
Query: 633 GPGGPKGMQHFPPGPGGP----------MPGPHGGPGGPVGPRLLGPPPPPRG--GDPFW 680
G G KG + FP PG P +PGP G G P P L G RG G P +
Sbjct: 43 GAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTG-SKGVRGISGLPGF 101
Query: 681 DG----PGDPMRGGP--MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR----- 729
G PG P GP + G PG +G G G P P G +G +
Sbjct: 102 SGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 730 ------SGGGPPNGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGSG 780
G P G PG G+ G G GP G G G GP G MG
Sbjct: 162 EEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGER 221
Query: 781 HRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
H+G G G G P ++G +G G GA G P GP G G
Sbjct: 222 VIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP-PGPSGLPG 280
Query: 841 GSGGHRPHEGPGHGGPHGHRPHD-VPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGG 899
S G PG G G D VPG G + G G G G G DG
Sbjct: 281 ESYGSE-KGAPGDPGLQGKPGKDGVPGFPGSE----------GVKG-NRGFPGLMGEDGI 328
Query: 900 HSHGGDM 906
GD+
Sbjct: 329 KGQKGDI 335
Score = 59.7 bits (143), Expect = 1e-08
Identities = 73/218 (33%), Positives = 80/218 (36%), Gaps = 43/218 (19%)
Query: 539 PGGSGGSPDGAGGSKLPPV-----LANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPN 593
P GS GSP GA G PP + GSMG GP+GP G MG P
Sbjct: 1243 PPGSRGSP-GAPGPPGPPGSHVIGIKGDKGSMGH-PGPKGPPG--------TAGDMGPPG 1292
Query: 594 --SHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP- 650
P L P + G G P GP GPKG PPG G
Sbjct: 1293 RLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKG----PPGVRGDP 1348
Query: 651 -------MPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPG----PG 699
+PG G PG P P + G P PP G P GP P RG PG PG
Sbjct: 1349 GTLKIISLPGSPGPPGTPGEPGMQGEPGPP--GPPGNLGPCGP------RGKPGKDGKPG 1400
Query: 700 -PGPY-HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPP 735
PGP +G G G P G +G R G P
Sbjct: 1401 TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSP 1438
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 105 bits (261), Expect = 3e-22
Identities = 131/386 (33%), Positives = 147/386 (38%), Gaps = 43/386 (11%)
Query: 538 EPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
EPG S G+ G G P L MG G P PG G E G+P S S
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPE------GAPGSPGS 1108
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFP--PGPGGPMPGPH 655
L +P PHG LG I P G GP G+ FP PGP G + G
Sbjct: 1109 PGLPGKPG----------PHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG-IRGDQ 1157
Query: 656 GGPG--GPVGPR----LLGPPPPPRGGDPFWDGPGDPMRGGP-MRGGPGPGPGPYHRGRG 708
G G GP G + LL PP PRG GD RG P G PG G
Sbjct: 1158 GRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGD--RGAPGFPGLPGRKGAMGDAGPR 1215
Query: 709 GRGGNEPPPPPPPFRGA--RGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSG 766
G G E P PP GA G GPP RG PG G G G G S G
Sbjct: 1216 GPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKG-SMG 1274
Query: 767 HRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHEGPGGGMGA 825
H +GP G G P G G+ G G P PG G G G + + G G +G
Sbjct: 1275 HPGPKGPPGTAGDMGPP--GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP 1332
Query: 826 GGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG-HDHRGPP-PHEHRGH 883
G P +GP G G G + PG GP G PG G GPP P + G
Sbjct: 1333 PGPIGP-KGPPGVRGDPGTLKIISLPGSPGPPG-----TPGEPGMQGEPGPPGPPGNLGP 1386
Query: 884 DGPGHGGGGHRGHDGGHSHGGDMSNR 909
GP G G G G G+ N+
Sbjct: 1387 CGP-RGKPGKDGKPGTPGPAGEKGNK 1411
Score = 99.8 bits (247), Expect = 1e-20
Identities = 157/538 (29%), Positives = 187/538 (34%), Gaps = 130/538 (24%)
Query: 511 PYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLA--------NLM 562
PY P PP L L + P + G GSP G + LP L
Sbjct: 480 PYIPGPPGLPGLPGLHGVKGIPGRQGA--AGLKGSPGSPGNTGLPGFPGFPGAQGDPGLK 537
Query: 563 GSMGAGKGPQG----PGGGGINVQ---EILTSIMGSPNSH----PSEELLKQPDYSDKIK 611
G G P+G PG G+ Q + L I G+P P EL + D+
Sbjct: 538 GEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQ-- 595
Query: 612 QMLVPHGLLG----PGPIANGFPPG-GPGGPKGMQHFPPGPGGPMP-------------- 652
P G G PGP PPG GP G G+Q PG P P
Sbjct: 596 ---GPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVST 652
Query: 653 ---GPHGGPGGPVGPRLLGPPPPP----RGGDPFWDGP-GDPMRGGPMRGGPGPGPGPYH 704
GP G PG P P GPP P + GDP GP G+P G P G PGP PGP
Sbjct: 653 PVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEP--GIPGIGFPGP-PGP-- 707
Query: 705 RGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG------GGHRPHEGPG 758
+G G G + P G G G P +G P M GG G R + G
Sbjct: 708 KGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEH 767
Query: 759 G-----------------GMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG--------G 793
G G+ G GP G G R EGP G+ G G
Sbjct: 768 GEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKG 827
Query: 794 GGGHRPHEGPGG-------------GISGGSGHRPHEGPGGGMGAGG--------GHRPH 832
G R GP G G +G G H+G G +G G G
Sbjct: 828 QQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGE 887
Query: 833 EGPGGSMGGSGGHRPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPP----PHEHRGHDGPG 887
+G G MG G P PG+ G G R +PG +G RG P +G+ GP
Sbjct: 888 DGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKG--QRGTPGAKGEQGDKGNPGPS 945
Query: 888 H-----GGGGHRGHDGGHSHGGDMSNRPVCRHFMMKGNCRYENNCAFYHPGVNGPPLP 940
G G G G + G+ NR V +KG PG GPP P
Sbjct: 946 EISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGL--------PGPAGPPGP 995
Score = 86.7 bits (213), Expect = 1e-16
Identities = 129/414 (31%), Positives = 144/414 (34%), Gaps = 89/414 (21%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G+ G+P G +P V G+ GA KG QG G N PSE
Sbjct: 905 PPGNPGTPGQRGSPGIPGVKGQ-RGTPGA-KGEQGDKG----------------NPGPSE 946
Query: 599 ELLKQPDYSDKIKQMLVPHGLLG----PGPIANGFPPGGPG--GPKGMQHFPPGPGGPMP 652
S I P GL G PG N PG PG G KG+ PGP GP P
Sbjct: 947 -------ISHVIGDKGEP-GLKGFAGNPGEKGNRGVPGMPGLKGLKGL----PGPAGP-P 993
Query: 653 GPHG---GPGGPVGPRLLGPPP-------------------PPRGGDPFWDG-------P 683
GP G G P P L G P P R G P G
Sbjct: 994 GPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDK 1053
Query: 684 GDP-MRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
G+P G G PGP P G G+ G P PP G G G P G PG
Sbjct: 1054 GEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPG 1113
Query: 743 ----GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGG 795
G +G G + GP G G G GP G G G GP G G G
Sbjct: 1114 KPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETG 1173
Query: 796 GHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGG 855
R GP G G G + G G G G G+MG +G P G G
Sbjct: 1174 LLRAPPGPRGN-PGAQGAKGDRGAPGFPGL-------PGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 856 PHGHRPHDVPGHRGHDHRGPP-PHEHRGHDGPGHGGGGH----RGHDGGHSHGG 904
P G +PG G +RGPP G GP G H +G G H G
Sbjct: 1226 PPGLPGAIIPGQTG--NRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPG 1277
Score = 77.8 bits (190), Expect = 4e-14
Identities = 127/410 (30%), Positives = 148/410 (36%), Gaps = 95/410 (23%)
Query: 541 GSGGSPDGAGGSKLP-------PVLANLMGSMGAGKGPQGPGG--GGINVQEILTSIMGS 591
GS GSP AG + P P L G GA GP G G G ++V + G
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA-PGPPGEAGPRGELSVSTPVPGPPGP 660
Query: 592 PN--SHPSEELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPGGPGGPKGMQHFP- 644
P HP + P + + P GL GP G GFP GP GPKG Q FP
Sbjct: 661 PGPPGHPGPQ--GPPGIPGSLGKCGDP-GLPGPDGEPGIPGIGFP--GPPGPKGDQGFPG 715
Query: 645 ----------------------PG---------PGGP----MPGPHGGPG--GPVG-PRL 666
PG PGGP PG G G G +G P L
Sbjct: 716 TKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGL 775
Query: 667 LGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGAR 726
G P P G+ DGP RG P + GP GP R G G + P +G +
Sbjct: 776 PGLPGTP--GNEGLDGP----RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 727 GGRSGGGPPNGRGGPG------GGMVGGGGHRPHEGPGGGMGNSS--GHRPHEGPGGGMG 778
G R GP G PG G G G H+G G +G G+ GP G G
Sbjct: 830 GRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDG 889
Query: 779 ----SGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHE- 833
G GP G G G P + GI G G R G G G G P E
Sbjct: 890 VIGMMGFPGAIGPPGPPGNPG--TPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEI 947
Query: 834 ----GPGGSMG-----GSGGHRPHEG-PGHGGPHGHR----PHDVPGHRG 869
G G G G+ G + + G PG G G + P PG RG
Sbjct: 948 SHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRG 997
Score = 77.4 bits (189), Expect = 6e-14
Identities = 121/412 (29%), Positives = 145/412 (35%), Gaps = 99/412 (24%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGG----GGINVQEILTSIMGSPNS 594
P GS G G LP GPQGP G G+ + + I G P
Sbjct: 56 PPGSPGQKGFTGPEGLP--------------GPQGPKGFPGLPGLTGSKGVRGISGLPGF 101
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGP 654
S L P + P+GL+G G G KG Q FP +PG
Sbjct: 102 SGSPGLPGTPGNTG-------PYGLVGVP---------GCSGSKGEQGFPG-----LPGT 140
Query: 655 HGGPGGPVGPRLLGPP-PPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGN 713
G PG P L G P + D D GDP G P GP PGP G G
Sbjct: 141 LGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDP--GLPGAPGPQGLPGP-----PGFPGP 193
Query: 714 EPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGG-------------G 760
PP PP F G G GP +G G ++G G R +G G G
Sbjct: 194 VGPPGPPGFFGFPGAMGPRGP---KGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTG 250
Query: 761 MGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG-------GGGGHRPHEGPGG-----GIS 808
N + + +G G MG P GP G G G G +G G G
Sbjct: 251 PDNRTDLKGEKGDKGAMGEPGPP--GPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFP 308
Query: 809 GGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHE------GPGHGGPHGHR 860
G G + + G G MG G G + GP G G + + ++ PG GP G R
Sbjct: 309 GSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGAR 368
Query: 861 -------PHDVPGHRGHDHRGPPPHEHRGHDG-PG-HGGGGHRGHDGGHSHG 903
P VPG G G RG G PG G G RG G + G
Sbjct: 369 GPQGPSGPPGVPGSPGSSRPG-----LRGAPGWPGLKGSKGERGRPGKDAMG 415
Score = 77.4 bits (189), Expect = 6e-14
Identities = 120/411 (29%), Positives = 138/411 (33%), Gaps = 109/411 (26%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G G P G GSK L G++G P PG G+ Q+ G+P
Sbjct: 116 PYGLVGVP-GCSGSKGEQGFPGLPGTLGY---PGIPGAAGLKGQK------GAPAKEEDI 165
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPG--------GPGGPKGMQHF--- 643
EL + D + P GL GP GP+ PPG GP GPKG
Sbjct: 166 ELDAKGDPG--LPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVI 223
Query: 644 -------------PPGPGGPM----------------------------PGPHGGPGGPV 662
PPGP G + PGP G PG
Sbjct: 224 GHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESY 283
Query: 663 GPRLLGPPPPPRGGDPFWDG-PGDP-------MRGGP----------MRGGPGP----GP 700
G P P G P DG PG P RG P +G GP GP
Sbjct: 284 GSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGP 343
Query: 701 GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPG-G 759
Y+ +G P PP P RGARG + GPP G PG G G PG
Sbjct: 344 TEYYDTYQEKGDEGTPGPPGP-RGARGPQGPSGPPGVPGSPGSSRPGLRG-----APGWP 397
Query: 760 GMGNSSGHRPHEG------PGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG-----GIS 808
G+ S G R G PG +G G G G G +GP G G
Sbjct: 398 GLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYL 457
Query: 809 GGSGHRPHEGPGGGMGAGGGHRPH-EGPGGSMGGSGGHRPHEGPGHGGPHG 858
G G +GP G G P+ GP G G G H PG G G
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAG 508
Score = 72.8 bits (177), Expect = 1e-12
Identities = 99/310 (31%), Positives = 106/310 (34%), Gaps = 81/310 (26%)
Query: 539 PGGSGGSP--DGAGGSKLPPVLANLMGSMGA--GKGPQGPGGGGINVQEILTSIMGSPNS 594
P G G+P GA G + P L G GA GP+GP T I G P
Sbjct: 1178 PPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGP-----------TGIEGFPG- 1225
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLG---PGPIANGFPPGGPGGPKGMQHFPPGPGGPM 651
P GL G PG N PPG G P PGP GP
Sbjct: 1226 ---------------------PPGLPGAIIPGQTGNRGPPGSRGSPGA-----PGPPGP- 1258
Query: 652 PGPH-----GGPGGPVGPRLLGPP-------PPPRGGDPFWDGPGDPMRGGPMRGGPGPG 699
PG H G G P GPP PP R G PG P GP RG PG
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLG-----APGTPGLPGP-RGDPGFQ 1312
Query: 700 PGPYHRGRGGR----GGNEPPPP-----PPPFRGARGGRSGGGPPNGRGGPGGGMVGGGG 750
P +G G G PP P PP RG G P G PG G G
Sbjct: 1313 GFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPG--TPGEPG 1370
Query: 751 HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG--GIS 808
+ GP G GN P PG G GP G G G + GP G G+
Sbjct: 1371 MQGEPGPPGPPGNLGPCGPRGKPG---KDGKPGTPGPAGEKGNKGS-KGEPGPAGSDGLP 1426
Query: 809 GGSGHRPHEG 818
G G R G
Sbjct: 1427 GLKGKRGDSG 1436
Score = 62.4 bits (150), Expect = 2e-09
Identities = 93/307 (30%), Positives = 107/307 (34%), Gaps = 47/307 (15%)
Query: 633 GPGGPKGMQHFPPGPGGP----------MPGPHGGPGGPVGPRLLGPPPPPRG--GDPFW 680
G G KG + FP PG P +PGP G G P P L G RG G P +
Sbjct: 43 GAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTG-SKGVRGISGLPGF 101
Query: 681 DG----PGDPMRGGP--MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR----- 729
G PG P GP + G PG +G G G P P G +G +
Sbjct: 102 SGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 730 ------SGGGPPNGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGSG 780
G P G PG G+ G G GP G G G GP G MG
Sbjct: 162 EEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGER 221
Query: 781 HRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
H+G G G G P ++G +G G GA G P GP G G
Sbjct: 222 VIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP-PGPSGLPG 280
Query: 841 GSGGHRPHEGPGHGGPHGHRPHD-VPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGG 899
S G PG G G D VPG G + G G G G G DG
Sbjct: 281 ESYGSE-KGAPGDPGLQGKPGKDGVPGFPGSE----------GVKG-NRGFPGLMGEDGI 328
Query: 900 HSHGGDM 906
GD+
Sbjct: 329 KGQKGDI 335
Score = 59.7 bits (143), Expect = 1e-08
Identities = 73/218 (33%), Positives = 80/218 (36%), Gaps = 43/218 (19%)
Query: 539 PGGSGGSPDGAGGSKLPPV-----LANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPN 593
P GS GSP GA G PP + GSMG GP+GP G MG P
Sbjct: 1243 PPGSRGSP-GAPGPPGPPGSHVIGIKGDKGSMGH-PGPKGPPG--------TAGDMGPPG 1292
Query: 594 --SHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP- 650
P L P + G G P GP GPKG PPG G
Sbjct: 1293 RLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKG----PPGVRGDP 1348
Query: 651 -------MPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPG----PG 699
+PG G PG P P + G P PP G P GP P RG PG PG
Sbjct: 1349 GTLKIISLPGSPGPPGTPGEPGMQGEPGPP--GPPGNLGPCGP------RGKPGKDGKPG 1400
Query: 700 -PGPY-HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPP 735
PGP +G G G P G +G R G P
Sbjct: 1401 TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSP 1438
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 105 bits (261), Expect = 3e-22
Identities = 131/386 (33%), Positives = 147/386 (38%), Gaps = 43/386 (11%)
Query: 538 EPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
EPG S G+ G G P L MG G P PG G E G+P S S
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPE------GAPGSPGS 1108
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFP--PGPGGPMPGPH 655
L +P PHG LG I P G GP G+ FP PGP G + G
Sbjct: 1109 PGLPGKPG----------PHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG-IRGDQ 1157
Query: 656 GGPG--GPVGPR----LLGPPPPPRGGDPFWDGPGDPMRGGP-MRGGPGPGPGPYHRGRG 708
G G GP G + LL PP PRG GD RG P G PG G
Sbjct: 1158 GRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGD--RGAPGFPGLPGRKGAMGDAGPR 1215
Query: 709 GRGGNEPPPPPPPFRGA--RGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSG 766
G G E P PP GA G GPP RG PG G G G G S G
Sbjct: 1216 GPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKG-SMG 1274
Query: 767 HRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRPHEGPGGGMGA 825
H +GP G G P G G+ G G P PG G G G + + G G +G
Sbjct: 1275 HPGPKGPPGTAGDMGPP--GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP 1332
Query: 826 GGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG-HDHRGPP-PHEHRGH 883
G P +GP G G G + PG GP G PG G GPP P + G
Sbjct: 1333 PGPIGP-KGPPGVRGDPGTLKIISLPGSPGPPG-----TPGEPGMQGEPGPPGPPGNLGP 1386
Query: 884 DGPGHGGGGHRGHDGGHSHGGDMSNR 909
GP G G G G G+ N+
Sbjct: 1387 CGP-RGKPGKDGKPGTPGPAGEKGNK 1411
Score = 99.8 bits (247), Expect = 1e-20
Identities = 157/538 (29%), Positives = 187/538 (34%), Gaps = 130/538 (24%)
Query: 511 PYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLA--------NLM 562
PY P PP L L + P + G GSP G + LP L
Sbjct: 480 PYIPGPPGLPGLPGLHGVKGIPGRQGA--AGLKGSPGSPGNTGLPGFPGFPGAQGDPGLK 537
Query: 563 GSMGAGKGPQG----PGGGGINVQ---EILTSIMGSPNSH----PSEELLKQPDYSDKIK 611
G G P+G PG G+ Q + L I G+P P EL + D+
Sbjct: 538 GEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQ-- 595
Query: 612 QMLVPHGLLG----PGPIANGFPPG-GPGGPKGMQHFPPGPGGPMP-------------- 652
P G G PGP PPG GP G G+Q PG P P
Sbjct: 596 ---GPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVST 652
Query: 653 ---GPHGGPGGPVGPRLLGPPPPP----RGGDPFWDGP-GDPMRGGPMRGGPGPGPGPYH 704
GP G PG P P GPP P + GDP GP G+P G P G PGP PGP
Sbjct: 653 PVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEP--GIPGIGFPGP-PGP-- 707
Query: 705 RGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG------GGHRPHEGPG 758
+G G G + P G G G P +G P M GG G R + G
Sbjct: 708 KGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEH 767
Query: 759 G-----------------GMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG--------G 793
G G+ G GP G G R EGP G+ G G
Sbjct: 768 GEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKG 827
Query: 794 GGGHRPHEGPGG-------------GISGGSGHRPHEGPGGGMGAGG--------GHRPH 832
G R GP G G +G G H+G G +G G G
Sbjct: 828 QQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGE 887
Query: 833 EGPGGSMGGSGGHRPHEGPGHGGPHGHR-PHDVPGHRGHDHRGPP----PHEHRGHDGPG 887
+G G MG G P PG+ G G R +PG +G RG P +G+ GP
Sbjct: 888 DGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKG--QRGTPGAKGEQGDKGNPGPS 945
Query: 888 H-----GGGGHRGHDGGHSHGGDMSNRPVCRHFMMKGNCRYENNCAFYHPGVNGPPLP 940
G G G G + G+ NR V +KG PG GPP P
Sbjct: 946 EISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGL--------PGPAGPPGP 995
Score = 86.7 bits (213), Expect = 1e-16
Identities = 129/414 (31%), Positives = 144/414 (34%), Gaps = 89/414 (21%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G+ G+P G +P V G+ GA KG QG G N PSE
Sbjct: 905 PPGNPGTPGQRGSPGIPGVKGQ-RGTPGA-KGEQGDKG----------------NPGPSE 946
Query: 599 ELLKQPDYSDKIKQMLVPHGLLG----PGPIANGFPPGGPG--GPKGMQHFPPGPGGPMP 652
S I P GL G PG N PG PG G KG+ PGP GP P
Sbjct: 947 -------ISHVIGDKGEP-GLKGFAGNPGEKGNRGVPGMPGLKGLKGL----PGPAGP-P 993
Query: 653 GPHG---GPGGPVGPRLLGPPP-------------------PPRGGDPFWDG-------P 683
GP G G P P L G P P R G P G
Sbjct: 994 GPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDK 1053
Query: 684 GDP-MRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG 742
G+P G G PGP P G G+ G P PP G G G P G PG
Sbjct: 1054 GEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPG 1113
Query: 743 ----GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMG-SGHRPHEGPGGSMGGGG 795
G +G G + GP G G G GP G G G GP G G G
Sbjct: 1114 KPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETG 1173
Query: 796 GHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGG 855
R GP G G G + G G G G G+MG +G P G G
Sbjct: 1174 LLRAPPGPRGN-PGAQGAKGDRGAPGFPGL-------PGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 856 PHGHRPHDVPGHRGHDHRGPP-PHEHRGHDGPGHGGGGH----RGHDGGHSHGG 904
P G +PG G +RGPP G GP G H +G G H G
Sbjct: 1226 PPGLPGAIIPGQTG--NRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPG 1277
Score = 77.8 bits (190), Expect = 4e-14
Identities = 127/410 (30%), Positives = 148/410 (36%), Gaps = 95/410 (23%)
Query: 541 GSGGSPDGAGGSKLP-------PVLANLMGSMGAGKGPQGPGG--GGINVQEILTSIMGS 591
GS GSP AG + P P L G GA GP G G G ++V + G
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA-PGPPGEAGPRGELSVSTPVPGPPGP 660
Query: 592 PN--SHPSEELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPGGPGGPKGMQHFP- 644
P HP + P + + P GL GP G GFP GP GPKG Q FP
Sbjct: 661 PGPPGHPGPQ--GPPGIPGSLGKCGDP-GLPGPDGEPGIPGIGFP--GPPGPKGDQGFPG 715
Query: 645 ----------------------PG---------PGGP----MPGPHGGPG--GPVG-PRL 666
PG PGGP PG G G G +G P L
Sbjct: 716 TKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGL 775
Query: 667 LGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGAR 726
G P P G+ DGP RG P + GP GP R G G + P +G +
Sbjct: 776 PGLPGTP--GNEGLDGP----RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 727 GGRSGGGPPNGRGGPG------GGMVGGGGHRPHEGPGGGMGNSS--GHRPHEGPGGGMG 778
G R GP G PG G G G H+G G +G G+ GP G G
Sbjct: 830 GRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDG 889
Query: 779 ----SGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHE- 833
G GP G G G P + GI G G R G G G G P E
Sbjct: 890 VIGMMGFPGAIGPPGPPGNPG--TPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEI 947
Query: 834 ----GPGGSMG-----GSGGHRPHEG-PGHGGPHGHR----PHDVPGHRG 869
G G G G+ G + + G PG G G + P PG RG
Sbjct: 948 SHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRG 997
Score = 77.4 bits (189), Expect = 6e-14
Identities = 121/412 (29%), Positives = 145/412 (35%), Gaps = 99/412 (24%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGG----GGINVQEILTSIMGSPNS 594
P GS G G LP GPQGP G G+ + + I G P
Sbjct: 56 PPGSPGQKGFTGPEGLP--------------GPQGPKGFPGLPGLTGSKGVRGISGLPGF 101
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGP 654
S L P + P+GL+G G G KG Q FP +PG
Sbjct: 102 SGSPGLPGTPGNTG-------PYGLVGVP---------GCSGSKGEQGFPG-----LPGT 140
Query: 655 HGGPGGPVGPRLLGPP-PPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGN 713
G PG P L G P + D D GDP G P GP PGP G G
Sbjct: 141 LGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDP--GLPGAPGPQGLPGP-----PGFPGP 193
Query: 714 EPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGG-------------G 760
PP PP F G G GP +G G ++G G R +G G G
Sbjct: 194 VGPPGPPGFFGFPGAMGPRGP---KGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTG 250
Query: 761 MGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG-------GGGGHRPHEGPGG-----GIS 808
N + + +G G MG P GP G G G G +G G G
Sbjct: 251 PDNRTDLKGEKGDKGAMGEPGPP--GPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFP 308
Query: 809 GGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGSGGHRPHE------GPGHGGPHGHR 860
G G + + G G MG G G + GP G G + + ++ PG GP G R
Sbjct: 309 GSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGAR 368
Query: 861 -------PHDVPGHRGHDHRGPPPHEHRGHDG-PG-HGGGGHRGHDGGHSHG 903
P VPG G G RG G PG G G RG G + G
Sbjct: 369 GPQGPSGPPGVPGSPGSSRPG-----LRGAPGWPGLKGSKGERGRPGKDAMG 415
Score = 77.4 bits (189), Expect = 6e-14
Identities = 120/411 (29%), Positives = 138/411 (33%), Gaps = 109/411 (26%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G G P G GSK L G++G P PG G+ Q+ G+P
Sbjct: 116 PYGLVGVP-GCSGSKGEQGFPGLPGTLGY---PGIPGAAGLKGQK------GAPAKEEDI 165
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPG--------GPGGPKGMQHF--- 643
EL + D + P GL GP GP+ PPG GP GPKG
Sbjct: 166 ELDAKGDPG--LPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVI 223
Query: 644 -------------PPGPGGPM----------------------------PGPHGGPGGPV 662
PPGP G + PGP G PG
Sbjct: 224 GHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESY 283
Query: 663 GPRLLGPPPPPRGGDPFWDG-PGDP-------MRGGP----------MRGGPGP----GP 700
G P P G P DG PG P RG P +G GP GP
Sbjct: 284 GSEKGAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGP 343
Query: 701 GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPG-G 759
Y+ +G P PP P RGARG + GPP G PG G G PG
Sbjct: 344 TEYYDTYQEKGDEGTPGPPGP-RGARGPQGPSGPPGVPGSPGSSRPGLRG-----APGWP 397
Query: 760 GMGNSSGHRPHEG------PGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG-----GIS 808
G+ S G R G PG +G G G G G +GP G G
Sbjct: 398 GLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYL 457
Query: 809 GGSGHRPHEGPGGGMGAGGGHRPH-EGPGGSMGGSGGHRPHEGPGHGGPHG 858
G G +GP G G P+ GP G G G H PG G G
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAG 508
Score = 72.8 bits (177), Expect = 1e-12
Identities = 99/310 (31%), Positives = 106/310 (34%), Gaps = 81/310 (26%)
Query: 539 PGGSGGSP--DGAGGSKLPPVLANLMGSMGA--GKGPQGPGGGGINVQEILTSIMGSPNS 594
P G G+P GA G + P L G GA GP+GP T I G P
Sbjct: 1178 PPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGP-----------TGIEGFPG- 1225
Query: 595 HPSEELLKQPDYSDKIKQMLVPHGLLG---PGPIANGFPPGGPGGPKGMQHFPPGPGGPM 651
P GL G PG N PPG G P PGP GP
Sbjct: 1226 ---------------------PPGLPGAIIPGQTGNRGPPGSRGSPGA-----PGPPGP- 1258
Query: 652 PGPH-----GGPGGPVGPRLLGPP-------PPPRGGDPFWDGPGDPMRGGPMRGGPGPG 699
PG H G G P GPP PP R G PG P GP RG PG
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLG-----APGTPGLPGP-RGDPGFQ 1312
Query: 700 PGPYHRGRGGR----GGNEPPPP-----PPPFRGARGGRSGGGPPNGRGGPGGGMVGGGG 750
P +G G G PP P PP RG G P G PG G G
Sbjct: 1313 GFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPG--TPGEPG 1370
Query: 751 HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG--GIS 808
+ GP G GN P PG G GP G G G + GP G G+
Sbjct: 1371 MQGEPGPPGPPGNLGPCGPRGKPG---KDGKPGTPGPAGEKGNKGS-KGEPGPAGSDGLP 1426
Query: 809 GGSGHRPHEG 818
G G R G
Sbjct: 1427 GLKGKRGDSG 1436
Score = 62.4 bits (150), Expect = 2e-09
Identities = 93/307 (30%), Positives = 107/307 (34%), Gaps = 47/307 (15%)
Query: 633 GPGGPKGMQHFPPGPGGP----------MPGPHGGPGGPVGPRLLGPPPPPRG--GDPFW 680
G G KG + FP PG P +PGP G G P P L G RG G P +
Sbjct: 43 GAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTG-SKGVRGISGLPGF 101
Query: 681 DG----PGDPMRGGP--MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR----- 729
G PG P GP + G PG +G G G P P G +G +
Sbjct: 102 SGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 730 ------SGGGPPNGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGSG 780
G P G PG G+ G G GP G G G GP G MG
Sbjct: 162 EEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGER 221
Query: 781 HRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
H+G G G G P ++G +G G GA G P GP G G
Sbjct: 222 VIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP-PGPSGLPG 280
Query: 841 GSGGHRPHEGPGHGGPHGHRPHD-VPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGG 899
S G PG G G D VPG G + G G G G G DG
Sbjct: 281 ESYGSE-KGAPGDPGLQGKPGKDGVPGFPGSE----------GVKG-NRGFPGLMGEDGI 328
Query: 900 HSHGGDM 906
GD+
Sbjct: 329 KGQKGDI 335
Score = 59.7 bits (143), Expect = 1e-08
Identities = 73/218 (33%), Positives = 80/218 (36%), Gaps = 43/218 (19%)
Query: 539 PGGSGGSPDGAGGSKLPPV-----LANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPN 593
P GS GSP GA G PP + GSMG GP+GP G MG P
Sbjct: 1243 PPGSRGSP-GAPGPPGPPGSHVIGIKGDKGSMGH-PGPKGPPG--------TAGDMGPPG 1292
Query: 594 --SHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP- 650
P L P + G G P GP GPKG PPG G
Sbjct: 1293 RLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKG----PPGVRGDP 1348
Query: 651 -------MPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPG----PG 699
+PG G PG P P + G P PP G P GP P RG PG PG
Sbjct: 1349 GTLKIISLPGSPGPPGTPGEPGMQGEPGPP--GPPGNLGPCGP------RGKPGKDGKPG 1400
Query: 700 -PGPY-HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPP 735
PGP +G G G P G +G R G P
Sbjct: 1401 TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSP 1438
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 104 bits (260), Expect = 3e-22
Identities = 111/336 (33%), Positives = 129/336 (38%), Gaps = 78/336 (23%)
Query: 627 NGFPPGGPG--------GPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDP 678
NG G PG GPKG + FP PG P P H GP GP G + GDP
Sbjct: 562 NGNLRGSPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQK-------GSVGDP 614
Query: 679 FWDGP-GDPMRGGPM--RGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPP 735
+GP G R GPM RG GP PG +G G G P PP G+ G + G P
Sbjct: 615 GMEGPMGQRGREGPMGPRGEAGP-PGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSP 673
Query: 736 NGRGGPG-------GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGS-GHRPHEGP 787
+G PG G VG G + +GP G G G + +GP G G G R G
Sbjct: 674 GPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPG-PKGDQGEKGPRGLTGEPGMRGLPGA 732
Query: 788 GGSMGGGGGHRP-----HEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRPH-------- 832
G G G P H+GP G G++G G R GP G G G P
Sbjct: 733 VGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGT 792
Query: 833 ---------------------------EGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVP 865
GP G G G P PG GP G +P
Sbjct: 793 PGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAG-----LP 847
Query: 866 GHRG-HDHRGPP-PHEHRGHDGPG-HGGGGHRGHDG 898
GH+ + +GPP P RG GP G G RG G
Sbjct: 848 GHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPG 883
Score = 99.8 bits (247), Expect = 1e-20
Identities = 115/328 (35%), Positives = 130/328 (39%), Gaps = 63/328 (19%)
Query: 616 PHGLLG-PGPIANGFPPGGPGGPKGMQHFPPGPGGP-----------MPGPHG--GPGGP 661
P G +G PGP + PG PG P + H PGP GP M GP G G GP
Sbjct: 571 PKGDMGSPGPKGDRGFPGTPGIPGPLGH--PGPQGPKGQKGSVGDPGMEGPMGQRGREGP 628
Query: 662 VGPRLLGPPPPPRGGDPFWDG----------PGDPMRGGP--MRGGPGP--GPGPYH--- 704
+GPR G PP G+ G PG P GP G PGP PGP
Sbjct: 629 MGPR--GEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQG 686
Query: 705 -RGR----GGRGGNEP--PPPPPPFRGARGGRSGGGPPNGRGGPGG-------GMVGGGG 750
RG G +G P PP P +G +G R G P RG PG G +G G
Sbjct: 687 LRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAG 746
Query: 751 HRPHEGPGG--GMGNSSGHRPHEGPGGGMGS-GHRPHEGPGGSMG--GGGGHRPHEGPGG 805
H+GP G G+ G R GP G G G +GP G G G G + G G
Sbjct: 747 PDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPG 806
Query: 806 GI--SGGSGHRPHEGPGGGMGAGGGHRPHEGPG-GSMGGSGGHRP----HEGPGHGGPHG 858
I S GS GP G GA G P PG G GH+ PG GP G
Sbjct: 807 KIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRG 866
Query: 859 HRPHDVPGHRGHDHRGPPPHEHRGHDGP 886
+PG G RGPP G GP
Sbjct: 867 PPGPSIPGPPG--PRGPPGEGLPGPPGP 892
Score = 90.1 bits (222), Expect = 9e-18
Identities = 131/435 (30%), Positives = 154/435 (35%), Gaps = 93/435 (21%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMG-----AGKGPQGPGGG-GINVQEILTSIMGSP 592
P GS GSP G G P L L G +G KGP GP G G ++ + G P
Sbjct: 666 PKGSSGSP-GPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEP 724
Query: 593 NSHPSEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPG--------GPKGMQHF 643
+ +P G +GP GP + P G G GP G
Sbjct: 725 GMRGLPGAVGEPGAK----------GAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGD 774
Query: 644 PPGPG--GPMPGPHGGPGGPVGPRLLGPPPPP-----RGGDPFWDGPGDPMRGGPMRGGP 696
P PG GP GP G PG P P + G P P G PG P G M G P
Sbjct: 775 PGKPGLTGPQ-GPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAM-GPP 832
Query: 697 GPGPGPYHRGRGGRGGNEP------PPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGG 750
GP P G G G++ PP PP RG G S GPP RG PG G+ G
Sbjct: 833 GPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGP-SIPGPPGPRGPPGEGLPG--- 888
Query: 751 HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGG--GHRPHEG-PGGGI 807
P PG + NS GP G G GP G G G GH+ +G PG
Sbjct: 889 --PPGPPGSFLSNSETFL--SGPPGPPGP-----PGPKGDQGPPGPRGHQGEQGLPGFST 939
Query: 808 SGGSGHRPH-EGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGH-GGPHGHRPHDVP 865
SG S + +GP GP G G G PG G P G P +
Sbjct: 940 SGSSSFGLNLQGP-------------PGPPGPQGPKGDKGDPGVPGALGIPSG--PSEGG 984
Query: 866 GHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNRPVCRHFMMKGNCRYEN 925
GPP G G G G S G + + + +
Sbjct: 985 SSSTMYVSGPP------------GPPGPPGPPGSISSSGQEIQQYISEYMQ-------SD 1025
Query: 926 NCAFYHPGVNGPPLP 940
+ Y GV GPP P
Sbjct: 1026 SIRSYLSGVQGPPGP 1040
Score = 86.7 bits (213), Expect = 1e-16
Identities = 126/394 (31%), Positives = 148/394 (37%), Gaps = 73/394 (18%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
PG G P G GS P + MG G +GP GP G G P S
Sbjct: 599 PGPQG--PKGQKGSVGDPGMEGPMGQRGR-EGPMGPRGEA-----------GPPGSGEKG 644
Query: 599 ELLKQPDYSDKIKQMLVPHGLLG-PGPI----ANGFP-PGGPGGPKGMQHFPPGPGGPMP 652
E + PHG G PG + ++G P P GP GP G+Q G +P
Sbjct: 645 ERGAAGEPG--------PHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVG--LP 694
Query: 653 GPHG--GPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGR 710
G G GP GP GP+ GD GP RG + G PG P G G
Sbjct: 695 GVKGDKGPMGPPGPK----------GDQGEKGP----RG--LTGEPGMRGLPGAVGEPGA 738
Query: 711 GGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGH 767
G P P +G RG + G P RG PG G G G +GP G G G
Sbjct: 739 KGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGI 798
Query: 768 RPHEGPGGGM----GSGHRPHEGPGGSMGGGGGHRPHEGPG-GGISGGSGHRP---HEGP 819
+ G G + GS GP G G G P PG G +G GH+ +GP
Sbjct: 799 KGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGP 858
Query: 820 GGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPP--- 876
G G P PG S+ G G R G G GP G P + GPP
Sbjct: 859 PGPPG------PRGPPGPSIPGPPGPRGPPGEGLPGPPG-PPGSFLSNSETFLSGPPGPP 911
Query: 877 -PHEHRGHDGPGHGGGGHRGHDG--GHSHGGDMS 907
P +G GP G GH+G G G S G S
Sbjct: 912 GPPGPKGDQGP-PGPRGHQGEQGLPGFSTSGSSS 944
Score = 82.8 bits (203), Expect = 1e-15
Identities = 96/291 (32%), Positives = 114/291 (39%), Gaps = 62/291 (21%)
Query: 538 EPGGSGG----SPDGAGGSKLPPVLANLMGSMGAGKGPQG-PGGGGINVQEILTSIMGSP 592
EPG G PDG G + L + G G GP G PG G+ + + G+P
Sbjct: 735 EPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGP-PGPSGDPGKPGLTGPQGPQGLPGTP 793
Query: 593 NSHPSEELLKQPDYSDKI-----KQMLV------PHGLLGPGPIANGFP-PGGPGGPKGM 640
+ +P KI ML P G +GP P G P P GP G G
Sbjct: 794 GR---PGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGP-PGPPGAPGPAGPAGLPGH 849
Query: 641 QHF-----PPGPGGP-------MPGPHGGPGGPVGPRLLGPPPPP----RGGDPFWDG-P 683
Q PPGP GP +PGP GP GP G L GPP PP + F G P
Sbjct: 850 QEVLNLQGPPGPPGPRGPPGPSIPGP-PGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPP 908
Query: 684 GDPMRGGPMRGGPGPGPGPY-HRGRGGRGG------------NEPPPPPPPFRGARGGRS 730
G P GP +G GP PGP H+G G G + PP PP +G +G +
Sbjct: 909 GPPGPPGP-KGDQGP-PGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKG 966
Query: 731 GGGPPNGRGGPGGGMVGGGGHRPH-EGPGGGMGNSSGHRPHEGPGGGMGSG 780
G P G P G GG + GP G G P PG SG
Sbjct: 967 DPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPG------PPGPPGSISSSG 1011
Score = 58.5 bits (140), Expect = 3e-08
Identities = 99/393 (25%), Positives = 132/393 (33%), Gaps = 100/393 (25%)
Query: 539 PGGSGGSPDGA----GGSKLPPVLANLMGSMGAG---KGPQGPGG-GGINVQEILTSIMG 590
PG G S DG+ ++L + + M S G GP GP G G + +E+L+ + G
Sbjct: 1111 PGPPGASGDGSLLSLDYAELSSRILSYMSSSGISIGLPGPPGPPGLPGTSYEELLSLLRG 1170
Query: 591 SPNSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGM---------- 640
S G++GP PPG PG P +
Sbjct: 1171 SEF-----------------------RGIVGPPG-----PPGPPGIPGNVWSSISVEDLS 1202
Query: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGP 700
+ +PGP G PG P GPR GPP + D R + P
Sbjct: 1203 SYLHTAGLSFIPGPPGPPGPP-GPR--GPPGVSGALATYAAENSDSFRSELISYLTSPDV 1259
Query: 701 GPYHRGRGGRGGNEPPPPPPPFRG-----ARGGRSGGGPPNGRGGPG--GGMVGGGGHRP 753
+ G G G + PP +RG S + R G M GGG
Sbjct: 1260 RSFIVGPPGPPGPQGPPGDSRLLSTDASHSRGSSSSSHSSSVRRGSSYSSSMSTGGGGAG 1319
Query: 754 HEGPGGGMGNSSGHR-PHE---GPGGGMGSGHR--PHEGPGGSMGGG-GGHRPH------ 800
G GG G ++G R P+ GPGGG G+ + G GG +G G +
Sbjct: 1320 SLGAGGAFGEAAGDRGPYGTDIGPGGGYGAAAEGGMYAGNGGLLGADFAGDLDYNELAVR 1379
Query: 801 -----------EGPGGGISGGSGHRPHEGPGG--------------------GMGAGGGH 829
+G + G G +GP G GA G
Sbjct: 1380 VSESMQRQGLLQGMAYTVQGPPGQPGPQGPPGISKVFSAYSNVTADLMDFFQTYGAIQGP 1439
Query: 830 RPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPH 862
+G G+ G G P PGH GP G R H
Sbjct: 1440 PGQKGEMGTPGPKGDRGPAGPPGHPGPPGPRGH 1472
Score = 43.1 bits (100), Expect = 0.001
Identities = 71/285 (24%), Positives = 89/285 (31%), Gaps = 67/285 (23%)
Query: 464 PRPLVLPSPLVTPGSNSQERYIQAEREKGILQELFLNKESPHE------PDPEPYEPIPP 517
P P P P PG + AE EL SP P P PP
Sbjct: 1217 PGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQGPP 1276
Query: 518 ---KLIPLDEECSMDETP------------YVETLEPGGSGGSPDGAGGSKLPPVLANLM 562
+L+ D S + Y ++ GG G GAGG+
Sbjct: 1277 GDSRLLSTDASHSRGSSSSSHSSSVRRGSSYSSSMSTGGGGAGSLGAGGA---------F 1327
Query: 563 GSMGAGKGPQG----PGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSD---KIKQMLV 615
G +GP G PGGG E + + DY++ ++ + +
Sbjct: 1328 GEAAGDRGPYGTDIGPGGGYGAAAE--GGMYAGNGGLLGADFAGDLDYNELAVRVSESMQ 1385
Query: 616 PHGLLGPGPIANGFPPGGPG--GPKGMQHF-----------------------PPGPGGP 650
GLL PPG PG GP G+ PPG G
Sbjct: 1386 RQGLLQGMAYTVQGPPGQPGPQGPPGISKVFSAYSNVTADLMDFFQTYGAIQGPPGQKGE 1445
Query: 651 M--PGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMR 693
M PGP G G P GP PP PRG GD + G R
Sbjct: 1446 MGTPGPKGDRG-PAGPPGHPGPPGPRGHKGEKGDKGDQVYAGRRR 1489
Score = 38.1 bits (87), Expect = 0.039
Identities = 63/261 (24%), Positives = 88/261 (33%), Gaps = 45/261 (17%)
Query: 555 PPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQML 614
P V + ++G G GPQGP G + + GS +S S + + YS +
Sbjct: 1257 PDVRSFIVGPPGP-PGPQGPPGDSRLLSTDASHSRGSSSSSHSSSVRRGSSYSSSMST-- 1313
Query: 615 VPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMP-----GPHGGPGGPVGPRLLGP 669
G G G + G G G +G GPGG G + G GG +G
Sbjct: 1314 ---GGGGAGSLGAGGAFGEAAGDRGPYGTDIGPGGGYGAAAEGGMYAGNGGLLGADF--- 1367
Query: 670 PPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR 729
GD ++ + R G G +G G+ G + PP A
Sbjct: 1368 -----AGDLDYNELAVRVSESMQRQGLLQGMAYTVQGPPGQPGPQGPPGISKVFSAYSNV 1422
Query: 730 SGG------------GPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGM 777
+ GPP +G +G G + GP G G H GP G
Sbjct: 1423 TADLMDFFQTYGAIQGPPGQKGE-----MGTPGPKGDRGPAGPPG-------HPGPPGPR 1470
Query: 778 GSGHRPHEGPGGSMGGGGGHR 798
G H+ +G G G R
Sbjct: 1471 G--HKGEKGDKGDQVYAGRRR 1489
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 104 bits (260), Expect = 3e-22
Identities = 112/395 (28%), Positives = 136/395 (34%), Gaps = 49/395 (12%)
Query: 522 LDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINV 581
L+E+ S +E+P + P G P G + PP GK PQGP G N
Sbjct: 19 LNEDVSQEESPSLIAGNP--QGAPPQGGNKPQGPP--------SPPGK-PQGPPPQGGNQ 67
Query: 582 QEILTSIMGSPNSHPSEELLKQ------------PDYSDKIKQMLVPHGLLGPGPIANGF 629
+ G P P + K P DK + P G P G
Sbjct: 68 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN 127
Query: 630 PPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRG 689
P GP P G PP GG P PG P GP G P G P +G
Sbjct: 128 QPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQG 187
Query: 690 GPMRGGPGPGPGPYHRGRGGRGGNEP--PPPP-----PPFRGARGGRSGGGPPNGRGGPG 742
G GP P PG +G +GGN+P PPPP PP +G +S PP G P
Sbjct: 188 GNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPP---GKPQ 243
Query: 743 GGMVGGG----GHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHR 798
G GG G P G G G++P P G G P G +
Sbjct: 244 GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGK 303
Query: 799 PHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHG 858
P P G + G P G G GG++P P +P P GG
Sbjct: 304 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG-------KPQGPPPQGGSKS 356
Query: 859 HRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGH 893
PG +GPP E GP GG+
Sbjct: 357 RSARSPPG----KPQGPPQQEGNNPQGPPPPAGGN 387
Score = 100 bits (250), Expect = 5e-21
Identities = 95/310 (30%), Positives = 113/310 (36%), Gaps = 49/310 (15%)
Query: 624 PIANGFPPGGPGGPKGMQHFPPGPGGPMP-GPHGGPGGPVGP------RLLGPPPP--PR 674
P G P GP P G PP GG P GP PG P GP + GPPPP P+
Sbjct: 40 PPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 99
Query: 675 GGDPFWDGP-----------GDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEP--PPPP-- 719
G P D G P +GG GP P PG +G +GGN+P PPPP
Sbjct: 100 GPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGK 158
Query: 720 ---PPFRGARGGRSGGGPPNGRGGPGGGMVGGG----GHRPHEGPGGGMGNSSGHRPHEG 772
PP +G RS PP G P G GG G P G G G++P
Sbjct: 159 PQGPPPQGDNKSRSSRSPP---GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 215
Query: 773 PGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPH 832
P G G P +P P G + G P G G GG++P
Sbjct: 216 PPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 275
Query: 833 EGPGGS-------MGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDG 885
P GGS PG +P P G+ +GPPP +
Sbjct: 276 GPPPPGKPQGPPPQGGSKSRSSRSPPG-------KPQGPPPQGGNQPQGPPPPPGKPQGP 328
Query: 886 PGHGGGGHRG 895
P GG +G
Sbjct: 329 PPQGGNKPQG 338
Score = 75.1 bits (183), Expect = 3e-13
Identities = 95/309 (30%), Positives = 110/309 (35%), Gaps = 75/309 (24%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G P GG+K G GK PQGP G N S G P P
Sbjct: 135 PPGKPQGPPPQGGNKP-------QGPPPPGK-PQGPPPQGDNKSRSSRSPPGKPQGPP-- 184
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPM-PGPHGG 657
P ++ P G P G PP G P+G PP PG P P P G
Sbjct: 185 -----PQGGNQ------PQGPPPPPGKPQGPPPQGGNKPQG----PPPPGKPQGPPPQGD 229
Query: 658 ---------PGGPVGP------RLLGPPPPPRGGDPFWDGP--GDPMRGGPMRGGP-GPG 699
PG P GP + GPPPPP G P P G+ +G P G P GP
Sbjct: 230 NKSQSARSPPGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPP 287
Query: 700 PGPYHRGRGGR------------GGNEP---PPPP-----PPFRGARGGRSGGGPPNGR- 738
P + R R GGN+P PPPP PP +G G + G PP G+
Sbjct: 288 PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPPPGKP 345
Query: 739 -GGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGH 797
G P G R G G G+ P P G+ +P P G G
Sbjct: 346 QGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQG---- 401
Query: 798 RPHEGPGGG 806
P P GG
Sbjct: 402 -PPRPPQGG 409
Score = 58.9 bits (141), Expect = 2e-08
Identities = 59/212 (27%), Positives = 75/212 (35%), Gaps = 35/212 (16%)
Query: 684 GDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG 743
G P +GG GP P P +G +GGN+P PPPP G+ G PP G P G
Sbjct: 38 GAPPQGGNKPQGP-PSPPGKPQGPPPQGGNQPQGPPPP-----PGKPQGPPPQGGNKPQG 91
Query: 744 GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGP 803
G +P P G + S P P G G +GP G G P
Sbjct: 92 PPPPG---KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ--- 145
Query: 804 GGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHD 863
G++P P G G P +G S PG +P
Sbjct: 146 -------GGNKPQGPPPPGKPQGP---PPQGDNKSRSS------RSPPG-------KPQG 182
Query: 864 VPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRG 895
P G+ +GPPP + P GG +G
Sbjct: 183 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 214
Score = 55.8 bits (133), Expect = 2e-07
Identities = 73/261 (27%), Positives = 82/261 (31%), Gaps = 56/261 (21%)
Query: 504 PHEPDPE----PYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLA 559
P P P+ P P PP P D PG G P G P
Sbjct: 201 PQGPPPQGGNKPQGPPPPGK-PQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGP--- 256
Query: 560 NLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGL 619
GK PQGP G N + G P P + P K + P G
Sbjct: 257 ----PPPPGK-PQGPPPQGGNKPQ------GPPP--PGKPQGPPPQGGSKSRSSRSPPGK 303
Query: 620 LGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPF 679
P G P GP P G PP GG P PG P G PPP+GG
Sbjct: 304 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG-------PPPQGGS-- 354
Query: 680 WDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 739
+ R PG GP + GN P PPPP +GG P +
Sbjct: 355 --------KSRSARSPPGKPQGPPQ-----QEGNNPQGPPPP--------AGGNPQQPQA 393
Query: 740 GPGGGMVGGGGHRPHEGPGGG 760
P G G P P GG
Sbjct: 394 PPAGQPQG-----PPRPPQGG 409
Score = 49.3 bits (116), Expect = 2e-05
Identities = 57/190 (30%), Positives = 65/190 (34%), Gaps = 43/190 (22%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSE 598
P G P GG+K G GK PQGP G + S G P P
Sbjct: 259 PPGKPQGPPPQGGNKP-------QGPPPPGK-PQGPPPQGGSKSRSSRSPPGKPQGPP-- 308
Query: 599 ELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPM-PGPHGG 657
P ++ P G P G PP G P+G PP PG P P P GG
Sbjct: 309 -----PQGGNQ------PQGPPPPPGKPQGPPPQGGNKPQG----PPPPGKPQGPPPQGG 353
Query: 658 ---------PGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRG 708
PG P GP P G +P GP P G P + P P R
Sbjct: 354 SKSRSARSPPGKPQGP------PQQEGNNP--QGPPPPAGGNPQQPQAPPAGQPQGPPRP 405
Query: 709 GRGGNEPPPP 718
+GG PP
Sbjct: 406 PQGGRPSRPP 415
Score = 45.4 bits (106), Expect = 2e-04
Identities = 53/186 (28%), Positives = 62/186 (33%), Gaps = 27/186 (14%)
Query: 504 PHEPDPE----PYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAGGSKLPPVLA 559
P P P+ P P PP P P + P G P GGSK
Sbjct: 242 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP--QGPPPPGKPQGPPPQGGSKS----- 294
Query: 560 NLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPSEELLKQPDYSDKIKQMLVPHGL 619
S PQGP G N + G P P P +K + P
Sbjct: 295 --RSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP-------PQGGNKPQGPPPPGKP 345
Query: 620 LGPGPIANG------FPPGGPGGPKGMQ-HFPPGPGGPMPGPHGGPGGPVGPRLLGPPPP 672
GP P PPG P GP + + P GP P G P P + GPP P
Sbjct: 346 QGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP 405
Query: 673 PRGGDP 678
P+GG P
Sbjct: 406 PQGGRP 411
Score = 37.4 bits (85), Expect = 0.066
Identities = 33/129 (25%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 773 PGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPH 832
P G G +GP G +P P G + G P G G GG++P
Sbjct: 36 PQGAPPQGGNKPQGPPSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 90
Query: 833 EGP------GGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGP 886
P G G P PG +P P G+ +GPPP + P
Sbjct: 91 GPPPPGKPQGPPPQGDKSRSPRSPPG-------KPQGPPPQGGNQPQGPPPPPGKPQGPP 143
Query: 887 GHGGGGHRG 895
GG +G
Sbjct: 144 PQGGNKPQG 152
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 104 bits (259), Expect = 4e-22
Identities = 136/408 (33%), Positives = 154/408 (37%), Gaps = 71/408 (17%)
Query: 539 PGGSGGSP--DGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMG-----S 591
P G G P DG G PP L G GA P PG G+ + + G
Sbjct: 36 PPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPG 95
Query: 592 PNSHPSEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGG-----PGGPKGMQHFPP 645
P P E P L GL GP G PPGG P GP G+ P
Sbjct: 96 PKGAPGERGSLGPPGPPG----LGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGL-P 150
Query: 646 GPGGPMPGPHGGPGG-PVG------PRLLGPPPPPRGGDPFWDGP-------GDPMRGGP 691
GP GP PGP G PG P G P + P PP G P + GP G+ + G
Sbjct: 151 GPPGP-PGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGE 209
Query: 692 MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG-----GPGG--G 744
+G PGP PGP G G G + P RG RG GPP RG GP G G
Sbjct: 210 -KGDPGP-PGP--AGLPGSVGLQGP------RGLRGLPGPLGPPGDRGPIGFRGPPGIPG 259
Query: 745 MVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPG 804
G G R GP G G G GP G G GP G G G + PG
Sbjct: 260 APGKAGDRGERGPEGFRG-PKGDLGRPGPKGTPGVA-----GPSGEPGMPGKDGQNGVPG 313
Query: 805 ----GGISGGSGHRPHEGPGG--GMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHG 858
G +G +G +GP G G+ G + +G G G G P PG G G
Sbjct: 314 LDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAG 373
Query: 859 HRPHDVPGHRGH-DHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGGD 905
+PG RG HRG G GP G G RG G GD
Sbjct: 374 -----MPGERGEAGHRGSA--GALGPQGP-PGAPGVRGFQGQKGSMGD 413
Score = 92.8 bits (229), Expect = 1e-18
Identities = 98/280 (35%), Positives = 110/280 (39%), Gaps = 46/280 (16%)
Query: 645 PGPGGPMPGPHGGPG-----GPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPG 699
PGP GP PGP G PG G GP L PP P+G PG P G PG
Sbjct: 31 PGPPGP-PGPPGKPGQDGIDGEAGPPGLPGPPGPKG------APGKP-------GKPGEA 76
Query: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGG 759
P G G G + PP P +GA G R GPP G G G+ G G GP G
Sbjct: 77 GLPGLPGVDGLTGRDGPPGP---KGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPG 133
Query: 760 GMG-----NSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG-----GISG 809
G+G SG GP G G P P G+ GP G G G
Sbjct: 134 GIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKG 193
Query: 810 GSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG 869
+G++ +G G G G P GP G G G P G GP G PG RG
Sbjct: 194 PTGYKGEQGEVGKDGEKGDPGP-PGPAGLPGSVGLQGPRGLRGLPGPLG-----PPGDRG 247
Query: 870 H-DHRGPPPHEHRGHDG-PGHGGG-GHRGHDGGHSHGGDM 906
RGPP G G PG G G RG +G GD+
Sbjct: 248 PIGFRGPP-----GIPGAPGKAGDRGERGPEGFRGPKGDL 282
Score = 69.7 bits (169), Expect = 1e-11
Identities = 136/451 (30%), Positives = 156/451 (34%), Gaps = 114/451 (25%)
Query: 547 DGAGGSKLPPVLANLMGSMGAGKGPQG----------PGGGGINVQEILTSIMGSPNSHP 596
DG G PP A L GS+G +GP+G PG G I G+P
Sbjct: 207 DGEKGDPGPPGPAGLPGSVGL-QGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPG--- 262
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPG--GPKGMQHFPPGPG-GPMP 652
K D ++ P G GP G + P G PG GP G P G +P
Sbjct: 263 -----KAGDRGER-----GPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVP 312
Query: 653 GPHGGPG--------GPVGPRLLGPPPPPRGGDPFWDGP----GDPMRGGPMRGGPG-PG 699
G G G G GP L P P R G G G+ GP G PG PG
Sbjct: 313 GLDGQKGEAGRNGAPGEKGPNGL-PGLPGRAGSKGEKGERGRAGELGEAGPS-GEPGVPG 370
Query: 700 ----PGPY----HRGRGGRGGNEPPPPPPPFRG------------------ARGGRSGGG 733
PG HRG G G + PP P RG RG G
Sbjct: 371 DAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRG 430
Query: 734 PPNGRGGPGG-----GMVGGGGHRPHEGPGGGMG--NSSGHRPHEGPGGGMG----SGHR 782
P G GP G G G G + GP G +G SG R GP G G SG +
Sbjct: 431 -PGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQ 489
Query: 783 PHEGPGGSMGGGG-------------------GHRPHEGPGGGISGG----SGHRPHEGP 819
GP G +G G R E GG IS + H
Sbjct: 490 GVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLA 549
Query: 820 GGGMGAGGGHRP--HEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHD-HRGPP 876
G +G G P GP GS+G G P PG+ GP G PG RG+ RG
Sbjct: 550 PGSIGRPGPAGPPGPPGPPGSIGHPGARGP---PGYRGPTGELGD--PGPRGNQGDRGDK 604
Query: 877 PHEHRGHDGP--GHGGGGHRGHDGGHSHGGD 905
G DGP G G +G G G D
Sbjct: 605 GAAGAGLDGPEGDQGPQGPQGVPGTSKDGQD 635
Score = 69.7 bits (169), Expect = 1e-11
Identities = 99/339 (29%), Positives = 117/339 (34%), Gaps = 74/339 (21%)
Query: 537 LEPGGSGGSPDGAGGSKLPPVL--ANLMGSMGAGKGPQGPGGG-GINVQEILTSIMGSPN 593
L G G P G + +P A GS GA GPQGP G G+ + MG P
Sbjct: 357 LGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGA-LGPQGPPGAPGVRGFQGQKGSMGDPG 415
Query: 594 SHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPG 653
+ P GL G PGG GPKG Q G +PG
Sbjct: 416 -------------------LPGPQGLRGD---VGDRGPGGAAGPKGDQGIAGSDG--LPG 451
Query: 654 PHG--GPGGPVGPR-------LLGPPPP--PRGGDPFWDGPGDPMRGGPM--RGGPGPGP 700
G GP G VGP+ LGP P G PG P GP+ +G PG
Sbjct: 452 DKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPP---GPLGLQGVPGV-- 506
Query: 701 GPYHRGRGGRGGNEPPPP----------------------PPPFRGARGGRSGGGPPNGR 738
P G+ G G E P G+ G GPP
Sbjct: 507 -PGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPP 565
Query: 739 GGPGG-GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGH 797
G PG G G G + GP G +G+ G R ++G G G+ +GP G G G
Sbjct: 566 GPPGSIGHPGARGPPGYRGPTGELGDP-GPRGNQGDRGDKGAAGAGLDGPEGDQGPQG-- 622
Query: 798 RPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPG 836
P PG G G GP G G G PG
Sbjct: 623 -PQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPG 660
Score = 62.4 bits (150), Expect = 2e-09
Identities = 116/407 (28%), Positives = 142/407 (34%), Gaps = 102/407 (25%)
Query: 539 PGGSGGSPDGAG--GSKLPPVLANLMGSMGAGKGPQG----------PGGGGINVQEILT 586
P G G+P AG G + P G +G GP+G PG G + Q +
Sbjct: 254 PPGIPGAPGKAGDRGERGPEGFRGPKGDLGR-PGPKGTPGVAGPSGEPGMPGKDGQNGVP 312
Query: 587 SIMGSP-----NSHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQ 641
+ G N P E K P+ + G G A GP G G+
Sbjct: 313 GLDGQKGEAGRNGAPGE---KGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGV- 368
Query: 642 HFPPGPGGPMPGPHG-----GPGGPVGPRLLGPPPPP--RG--------GDPFWDGPGDP 686
PG G MPG G G G +GP+ GPP P RG GDP GP
Sbjct: 369 ---PGDAG-MPGERGEAGHRGSAGALGPQ--GPPGAPGVRGFQGQKGSMGDPGLPGP-QG 421
Query: 687 MRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPP------------PPPFRGARG--GRSGG 732
+RG GPG GP +G G G++ P P G+RG G G
Sbjct: 422 LRGDVGDRGPGGAAGP--KGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGT 479
Query: 733 GPPNGRGGPGG--------GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGM------- 777
PNG G G G+ G G G G G + + GGM
Sbjct: 480 QGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQ 539
Query: 778 -----------GSGHRPHE-------GPGGSMGGGGGHRP--HEGPGGGISGGSGHRPHE 817
GS RP GP GS+G G P + GP G + G G R ++
Sbjct: 540 LAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGEL-GDPGPRGNQ 598
Query: 818 GPGGGMGAGG-GHRPHEGPGGSMG-----GSGGHRPHEGPGHGGPHG 858
G G GA G G EG G G G+ PG GP G
Sbjct: 599 GDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPG 645
Score = 58.5 bits (140), Expect = 3e-08
Identities = 95/330 (28%), Positives = 110/330 (33%), Gaps = 93/330 (28%)
Query: 537 LEPGGSGGSP-----DGAGGSKLPPVLANLMGSMGAGKGPQGPGGG-GINVQEILTSIMG 590
L P G G+P G GS P L G G G +GPGG G + + G
Sbjct: 390 LGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRG-DVGDRGPGGAAGPKGDQGIAGSDG 448
Query: 591 SPNSHPSEELLKQPDYSDKIKQMLVPHGLLGP----GPIANGFPPG--GPGGPKGMQHFP 644
P K L P GL+GP G P G GP G G+Q P
Sbjct: 449 LPGD----------------KGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVP 492
Query: 645 PGPGGPMPGPHGGPGGPVGPRLLGPPPPPR------------GG--------------DP 678
GP PGP G G P P + G P P GG P
Sbjct: 493 ----GP-PGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKP 547
Query: 679 FWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNG- 737
PG R GP G PGP P G G G PP +RG G GP
Sbjct: 548 L--APGSIGRPGPA-GPPGPPGPPGSIGHPGARG------PPGYRGPTGELGDPGPRGNQ 598
Query: 738 -----RGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG 792
+G G G+ G G + +GP G G S +G G G GP G G
Sbjct: 599 GDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSK-----DGQDGAPG-----EPGPPGDPG 648
Query: 793 GGGGHRPHEGPG--------GGISGGSGHR 814
G PG G + GG G +
Sbjct: 649 LPGAIGAQGTPGICDTSACQGAVLGGVGEK 678
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 103 bits (258), Expect = 6e-22
Identities = 129/387 (33%), Positives = 156/387 (40%), Gaps = 54/387 (13%)
Query: 538 EPGGSGGSPDGAGGSK----LP----PVLANLMGSMGAGKGPQGPGGGGINVQEILTSIM 589
+PG G P G GSK LP P+ NL+GS G P PG G++ + +
Sbjct: 930 QPGLPG--PTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLP 987
Query: 590 GSPNSH--PSEELLKQPDYSDKIKQMLVPHGLLGP----GPIAN-GFP-PGGPGGPKGMQ 641
G P + L P + GL+GP G I + GFP P G GP G
Sbjct: 988 GDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPS 1047
Query: 642 HFPPGPGGP-MPGPHGGPGGPVGPRLLGPP--PPPRGGDPFWDGPGDPMRGGPMRGGPG- 697
P PG P +PG G G P G +G P P P+G PG+P G + G PG
Sbjct: 1048 GVPGQPGSPGLPGQKGDKGDP-GISSIGLPGLPGPKGEPGLPGYPGNPGIKGSV-GDPGL 1105
Query: 698 PG-PG-PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-GMVGGGGHRPH 754
PG PG P +G+ G G P PP G + GPP G PG G VGGGGH
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPP------GPKGISGPPGNPGLPGEPGPVGGGGHPGQ 1159
Query: 755 EGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG--GISGGSG 812
GP G G G GP G G +P G + GP G G+SG G
Sbjct: 1160 PGPPGEKGKP-GQDGIPGPAGQKGEPGQPGFG-------------NPGPPGLPGLSGQKG 1205
Query: 813 HRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDH 872
G G G G +G G G G P PG GP P PG +G
Sbjct: 1206 DGGLPGIPGNPGLPGP----KGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPG 1261
Query: 873 RGPPPHEHRGHDGPGHGG-GGHRGHDG 898
R P PG+GG G +G+ G
Sbjct: 1262 RPGLPGPEGPPGLPGNGGIKGEKGNPG 1288
Score = 103 bits (256), Expect = 1e-21
Identities = 152/476 (31%), Positives = 180/476 (37%), Gaps = 87/476 (18%)
Query: 470 PSPLVTPGSNSQERYIQAEREKGILQELFL----NKESPHEPDPEPYEPIPPKLIPLDEE 525
P P PG Q I KG + ++ E P P P +P P L P +
Sbjct: 1005 PGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGL-PGQKG 1063
Query: 526 CSMDETPYVETL----------EPG--GSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQG 573
D P + ++ EPG G G+P G GS P L L G+ GA KG G
Sbjct: 1064 DKGD--PGISSIGLPGLPGPKGEPGLPGYPGNP-GIKGSVGDPGLPGLPGTPGA-KGQPG 1119
Query: 574 ----------PGGGGINVQEILTSIMGSPN-----SHPSEELLKQPDYSDKIKQMLVP-- 616
PG GI+ + G P HP + P K Q +P
Sbjct: 1120 LPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP--GPPGEKGKPGQDGIPGP 1177
Query: 617 ---HGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGP-MPGP------HGGPGGPVGP 664
G G N PPG PG G KG P PG P +PGP HG PG
Sbjct: 1178 AGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPG----- 1232
Query: 665 RLLGPPPPPRGGDPFWDGP-GDPMRGGP--MRGGPGPGPGPYHRGRGGRGGNEPPPPPPP 721
+ GPP PP P +GP G+P GP G PGP P G GG G + P P
Sbjct: 1233 -VQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPG 1291
Query: 722 FRGARGGRSGGGPPNGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMG 778
G G + GPP +G PG G+ G G G G GM SG GP G G
Sbjct: 1292 LPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPG 1351
Query: 779 SGHRPHEGPGGSMGGGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRPHEGPG 836
P GP G G G +G G GI G G + GP G G G P PG
Sbjct: 1352 LIGPP--GPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPG 1409
Query: 837 GS----MGGSGGHRPHEG-PGHGGPHGHRPHDVPGHRGHDHRGPP-PHEHRGHDGP 886
+ G+GG + G PG PG RG D GPP P +G GP
Sbjct: 1410 RNGLPGFDGAGGRKGDPGLPGQ-----------PGTRGLD--GPPGPDGLQGPPGP 1452
Score = 99.4 bits (246), Expect = 1e-20
Identities = 165/527 (31%), Positives = 185/527 (35%), Gaps = 139/527 (26%)
Query: 538 EPGGSG----------GSP--DGAGGSKLPPVLANLMGSMGAG-----------KGPQGP 574
+PG G GSP GA G PP L G GA GP GP
Sbjct: 847 DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGP 906
Query: 575 GGG-GINVQEILTSIMGSPNSHPSEELLKQPDYSDKI--KQMLVPHGLLG-PGPI----- 625
G GI + G P + L QP K GL G PGP+
Sbjct: 907 PGPLGIPGRS------GVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLL 960
Query: 626 ----ANGFP--PGGPG--GPKGMQHFPPGPGGP----------MPGPHGGPGGPVGPRLL 667
G P PG PG GPKG Q P PG P PGP G PG P P L+
Sbjct: 961 GSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLI 1020
Query: 668 GPP-----------PPPRG--------------------------GDPFWDGPGDPMRGG 690
GPP P P+G GDP G P G
Sbjct: 1021 GPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPG 1080
Query: 691 PMRGGPG-PG-PG----------PYHRGRGGRGGNEPPPPPPPFRGARG--GRSG-GGPP 735
P +G PG PG PG P G G G + P P F G G G G GPP
Sbjct: 1081 P-KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPP 1139
Query: 736 NGRGGPG-GGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRP---HEGPGGSM 791
G PG G VGGGGH GP G G G GP G G +P + GP G
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKG-KPGQDGIPGPAGQKGEPGQPGFGNPGPPGLP 1198
Query: 792 GGGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGGGHRPHEGPG-------GSMGGS 842
G G +G GG GI G G +G G G G P PG G G
Sbjct: 1199 GLSG----QKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNP 1254
Query: 843 GGHRPHEGPGHGGPHGHRPHDVPGHRG-HDHRGPPPHEH-------RGHDGPGHGGGGHR 894
G P PG GP G P +PG+ G +G P +G GP G G+
Sbjct: 1255 GPQGPPGRPGLPGPEG--PPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGP-PGLQGNP 1311
Query: 895 GHDGGHSHGGDMSNRPVCRHFMMKGNCRYENNCA-FYHPGVNGPPLP 940
G G + GD V MKG + PG+ GPP P
Sbjct: 1312 GRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGP 1358
Score = 98.2 bits (243), Expect = 3e-20
Identities = 127/372 (34%), Positives = 145/372 (38%), Gaps = 63/372 (16%)
Query: 539 PGGSG--GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHP 596
PG G GS G P + G +G+ P PG G Q+ L + G P P
Sbjct: 535 PGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPG-PKGEP 593
Query: 597 SEELLKQPDYSDKIKQMLVPHGLLGP-GPIANGFPPGGPGGPKGMQHFPPGPGGP-MPGP 654
K + G +GP GP GF P GP G KG+Q PG P +PGP
Sbjct: 594 GGITFKGERGPPGNPGLPGLPGNIGPMGP--PGFGPPGPVGEKGIQGVAGNPGQPGIPGP 651
Query: 655 HGGPG------------------GPVG----PRLLGPPP----PPRGGDPFWDGPGDPMR 688
G PG G VG P L G P P G+P G G P
Sbjct: 652 KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGP 711
Query: 689 GGPMRGGPG-PGPGPYHRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRGGPG-GG 744
GP +G PG PGP P G GR G E PP PP F G +G G + GPP G PG G
Sbjct: 712 PGP-KGFPGIPGP-PGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKG 769
Query: 745 MVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEG-- 802
+G G R GP GP G G P GP G +G G P
Sbjct: 770 ALGPKGDRGFPGP-------------PGPPGRTGLDGLP--GPKGDVGPNGQPGPMGPPG 814
Query: 803 -PGGGISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGG-SMGGSGGHRPHEG-PGHGGPH 857
PG G+ G G GP G G G G + GP G + G G R G PG GP
Sbjct: 815 LPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPI 874
Query: 858 GHRPHDVPGHRG 869
G P PG G
Sbjct: 875 G--PPGSPGLPG 884
Score = 79.3 bits (194), Expect = 2e-14
Identities = 92/274 (33%), Positives = 105/274 (38%), Gaps = 31/274 (11%)
Query: 633 GPGGPKGMQHFPPGPGGP-MPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDG-PGDPMRGG 690
G G KG + FP G P +PG GP GP GPR G DG PG P G
Sbjct: 42 GIKGEKGERGFPGLEGHPGLPG-FPGPEGPPGPR----------GQKGDDGIPGPPGPKG 90
Query: 691 PMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPG-GGMVGGG 749
+RG PG P G G G++ P P G G + G P G PG G G
Sbjct: 91 -IRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPP 149
Query: 750 GHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISG 809
G +G G + SS P PG G + GP G G G P G+ G
Sbjct: 150 GIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGP-----PGLMG 204
Query: 810 GSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRG 869
G GP G MG +GP G G G P PG RP DV +G
Sbjct: 205 PPGPPGLPGPKGNMGLN-----FQGPKGEKGEQGLQGPPGPPGQISEQ-KRPIDVEFQKG 258
Query: 870 HD----HRGPP-PHEHRGHDGPGHGGGGHRGHDG 898
RGPP P RG GP G G +G G
Sbjct: 259 DQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQG 292
Score = 79.0 bits (193), Expect = 2e-14
Identities = 132/435 (30%), Positives = 159/435 (36%), Gaps = 80/435 (18%)
Query: 539 PGGSG-GSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQ-----EILTSIMGSP 592
PG G P G G PP LMG G P G G+N Q + + G P
Sbjct: 179 PGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP 238
Query: 593 NSHPSEELLKQP-DYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGM--QHFPPGPGG 649
K+P D + +P PGP PPG PGG KG + PG G
Sbjct: 239 GPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRG 298
Query: 650 PMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGP--MRGGPGPGPGP----- 702
PG G G P G P P GDP + PG+P R G +G GP PGP
Sbjct: 299 -KPGKDGENGQP------GIPGLP--GDPGY--PGEPGRDGEKGQKGDTGP-PGPPGLVI 346
Query: 703 YHRGRG---GRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG---------GMVGGGG 750
G G G GN P P +G RG GPP G PG G G G
Sbjct: 347 PRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERG 406
Query: 751 HRPHEGPGG-------GMGNSSGHRPHEGPGGGMGSGHRPHE--------GPGGSMGGGG 795
+ EGP G G+ G GP G G P + GP GS G G
Sbjct: 407 QKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKG 466
Query: 796 --GHRPHEGP---------GGGISGGSGHRPHEGPGGGMGAGG--GHRPHEGPGGSMGGS 842
G + +G G GISG G G G G+ G G + +G G+ G
Sbjct: 467 LQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPK 526
Query: 843 GGHRPHEGPGHGGPHGHR--PHDV---PGHRGH--DHRGPPPHEHRGHDG-PGHGG---- 890
G PG G G + P D+ PG +G + P G G PG G
Sbjct: 527 GLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGL 586
Query: 891 GGHRGHDGGHSHGGD 905
G +G GG + G+
Sbjct: 587 PGPKGEPGGITFKGE 601
Score = 78.2 bits (191), Expect = 3e-14
Identities = 101/341 (29%), Positives = 120/341 (35%), Gaps = 66/341 (19%)
Query: 616 PHGLLGPGPIANGFPPGGPG--GPKGMQHFPPGPGGPMPGPHG-----------GPGGPV 662
P GL GP A PPG PG G +G + PG +PGP G GP GP
Sbjct: 381 PPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 663 GPRL--------LGPPPPPRG----------------GDPFWDGPGDPMRGGPMRGG-PG 697
GP + GPP PP GD ++ G + G P + G PG
Sbjct: 441 GPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPG 500
Query: 698 -PGPG-----PYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGG-----GMV 746
PGP P +G G+ G P P GA G G P +G PG GM
Sbjct: 501 LPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPG---APGFPGSKGEPGDILTFPGMK 557
Query: 747 GGGGHRPHEGPGG--GMGNSSGH-------RPHEGPGGGMGSGHRPHEGPGGSMGGGGGH 797
G G G G G+ + G P PGG G R G G G G
Sbjct: 558 GDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNI 617
Query: 798 RPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPH 857
P PG G G G + +G G G G P PG ++ G PG G
Sbjct: 618 GPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDV 677
Query: 858 GHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDG 898
G +PG G + P PG G G G G
Sbjct: 678 G-----LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPG 713
Score = 77.4 bits (189), Expect = 6e-14
Identities = 109/354 (30%), Positives = 125/354 (35%), Gaps = 71/354 (20%)
Query: 616 PHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP-------MPGP------------HG 656
P G G I P G GP G+ FP PG P PGP G
Sbjct: 73 PRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERG 132
Query: 657 GPGGPVGPRLLGPPPPP----RGGDP------FWDGP-GDPMRGGP--MRGGPGPGPGPY 703
PG P P L GPP PP G+P GP G+P GP ++G PGP P
Sbjct: 133 FPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPG 192
Query: 704 HRGRGGRGGNEPPPPPPPFRGARG--GRSGGGPPNGRG-----GPGG------------- 743
G G G PP PP G +G G + GP +G GP G
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 744 -----GMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGS-GHRPHEGPGGSMGGGGGH 797
G G G R GP G G +G G G G R G G G G
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 798 RPHEGPG-GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGP 856
PG G G G + +G G G G P G G ++G G PG G
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Query: 857 HG----HRPHDVPGHRGHDHRGPP-----PHE--HRGHDG-PGHGGGGHRGHDG 898
G P +PG G GPP P E +G +G PG G G DG
Sbjct: 373 RGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDG 426
Score = 77.0 bits (188), Expect = 8e-14
Identities = 134/459 (29%), Positives = 162/459 (35%), Gaps = 141/459 (30%)
Query: 539 PGGSGGSPDGAGGSKLPPVLANLMGSMGAG-----KGPQGPGGGGINVQEILTSIMGSPN 593
PG G G PP L G++G GP GP G T + G P
Sbjct: 745 PGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGR--------TGLDGLPG 796
Query: 594 SHPSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPG----GPKGMQHFPPGPGG 649
K + P+G PGP+ PPG PG GP G PPG G
Sbjct: 797 P----------------KGDVGPNGQ--PGPMG---PPGLPGIGVQGPPG----PPGIPG 831
Query: 650 PM--PGPHGGPG---GPVGPRLLGPPPPPRGGDPFWDG----------PGDPMRGGP--- 691
P+ PG HG PG P P L P PP G P G PG P + G
Sbjct: 832 PIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGF 891
Query: 692 --------MRGGPGPGPGPYH----------RGRGGRGGNEPPPPPPPFRGARGGRSGGG 733
M G PGP PGP +G G G P P +G++G G
Sbjct: 892 PGTKGEMGMMGPPGP-PGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPG 950
Query: 734 PP-----------NGRGGPG-GGMVGGGGHRPHEGPGG--GMGNSSGHRPHEGPGGGMGS 779
PP +G PG G+ G G + ++G G G SG GP G G+
Sbjct: 951 PPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGN 1010
Query: 780 GHRPHE----GPGGSMG-----GGGGHRPHEGPGG--GISGGSGHRPHEGPGGGMGAGG- 827
P + GP G G G G + EGP G G+ G G G G G G
Sbjct: 1011 PGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGI 1070
Query: 828 ------------------GHRPHEGPGGSMG--------GSGGHRPHEG-PGHGGPHGHR 860
G+ + G GS+G G+ G + G PG G G
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPG-- 1128
Query: 861 PHDVPGHRGHDHRGPPPHEH-RGHDGPGHGGGGHRGHDG 898
PG +G GPP + G GP GGGGH G G
Sbjct: 1129 ---PPGPKGIS--GPPGNPGLPGEPGP-VGGGGHPGQPG 1161
Score = 68.6 bits (166), Expect = 3e-11
Identities = 94/304 (30%), Positives = 108/304 (35%), Gaps = 78/304 (25%)
Query: 539 PGGSGGSPDGAG-GSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSHPS 597
P G G P G G+ PP L L G G G P PG G L G P H
Sbjct: 1177 PAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPG------LPGPKGEPGFHGF 1230
Query: 598 EELLKQPDYSDKIKQMLVPHGLLGP---GPIANGFPPGGPG-----GPKGMQHFPPG-PG 648
+ P P G GP GP N P G PG GP+G PPG PG
Sbjct: 1231 PGVQGPPG----------PPGSPGPALEGPKGNPGPQGPPGRPGLPGPEG----PPGLPG 1276
Query: 649 -GPMPGPHGGPGGPVGPRLLG-----PPPPPRG-----------GDPFWDG-PGDPMRGG 690
G + G G PG P P L G PP +G GDP G PG P G
Sbjct: 1277 NGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Query: 691 P--------------MRGGPGPG--PGPYHRGRGGRGGNEPP--PPPPPFRGARGGRSGG 732
P + G PGP PGP + +G PP P P +G G +
Sbjct: 1337 PSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQ 1396
Query: 733 GPPNGRGGPGG-------GMVGGGGHRPHEGPGG-----GMGNSSGHRPHEGPGGGMGSG 780
G P G PG G G GG + G G G+ G +GP G G+
Sbjct: 1397 GLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTS 1456
Query: 781 HRPH 784
H
Sbjct: 1457 SVAH 1460
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,020,168
Number of Sequences: 37866
Number of extensions: 5389766
Number of successful extensions: 85682
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 1943
Number of HSP's that attempted gapping in prelim test: 24059
Number of HSP's gapped (non-prelim): 22649
length of query: 940
length of database: 18,247,518
effective HSP length: 112
effective length of query: 828
effective length of database: 14,006,526
effective search space: 11597403528
effective search space used: 11597403528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.