COL17A1 2365

Name: COL17A1	Sequence: fasta or formatted (1497aa)		NCBI GI: 119829187
Description: alpha 1 type XVII collagen		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.7 85 3 C cysteine 0.5 7 2 D aspartate 3.6 54 2 E glutamate 4.2 63 2 F phenylalanine 1.7 25 2 G glycine 18.8 282 5 H histidine 1.5 23 1 I isoleucine 2.7 41 1 K lysine 4.0 60 2 L leucine 7.1 107 4 M methionine 2.2 33 2 N asparagine 2.1 31 2 P proline 13.6 204 2 Q glutamine 3.2 48 2 R arginine 4.5 68 5 S serine 11.9 178 5 T threonine 5.6 84 4 V valine 3.9 58 2 W tryptophan 0.7 10 2 Y tyrosine 2.4 36 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XVII collagen COL5A2 0.157 alpha 2 type V collagen preproprotein COL5A3 0.154 collagen, type V, alpha 3 preproprotein COL5A1 0.154 alpha 1 type V collagen preproprotein COL1A1 0.153 alpha 1 type I collagen preproprotein COL3A1 0.153 collagen type III alpha 1 preproprotein COL4A5 0.152 type IV collagen alpha 5 isoform 1 precursor COL11A1 0.152 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.152 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.152 alpha 1 type XI collagen isoform A preproprotein [Ho... COL4A5 0.152 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.152 type IV collagen alpha 5 isoform 3 precursor COL11A2 0.150 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.150 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.150 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL2A1 0.150 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.150 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL7A1 0.150 alpha 1 type VII collagen precursor COL27A1 0.146 collagen, type XXVII, alpha 1 COL22A1 0.144 collagen, type XXII, alpha 1 COL1A2 0.139 alpha 2 type I collagen COL4A4 0.139 alpha 4 type IV collagen precursor COL4A3 0.139 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.139 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.139 alpha 3 type IV collagen isoform 1 precursor COL4A1 0.139 alpha 1 type IV collagen preproprotein COL4A3 0.138 alpha 3 type IV collagen isoform 5 precursor COL16A1 0.134 alpha 1 type XVI collagen precursor LOC100293055 0.133 PREDICTED: similar to COL22A1 protein COL4A2 0.133 alpha 2 type IV collagen preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.