Guide to the Human Genome
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Name: COL17A1 Sequence: fasta or formatted (1497aa) NCBI GI: 119829187
Description:

alpha 1 type XVII collagen

Referenced in:

Collagen

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         85           3
 C cysteine            0.5          7           2
 D aspartate           3.6         54           2
 E glutamate           4.2         63           2
 F phenylalanine       1.7         25           2
 G glycine            18.8        282           5
 H histidine           1.5         23           1
 I isoleucine          2.7         41           1
 K lysine              4.0         60           2
 L leucine             7.1        107           4
 M methionine          2.2         33           2
 N asparagine          2.1         31           2
 P proline            13.6        204           2
 Q glutamine           3.2         48           2
 R arginine            4.5         68           5
 S serine             11.9        178           5
 T threonine           5.6         84           4
 V valine              3.9         58           2
 W tryptophan          0.7         10           2
 Y tyrosine            2.4         36           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 1 type XVII collagen 
COL5A2                0.157   alpha 2 type V collagen preproprotein 
COL5A3                0.154   collagen, type V, alpha 3 preproprotein 
COL5A1                0.154   alpha 1 type V collagen preproprotein 
COL1A1                0.153   alpha 1 type I collagen preproprotein 
COL3A1                0.153   collagen type III alpha 1 preproprotein 
COL4A5                0.152   type IV collagen alpha 5 isoform 1 precursor 
COL11A1               0.152   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.152   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.152   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL4A5                0.152   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.152   type IV collagen alpha 5 isoform 3 precursor 
COL11A2               0.150   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.150   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.150   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL2A1                0.150   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.150   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL7A1                0.150   alpha 1 type VII collagen precursor 
COL27A1               0.146   collagen, type XXVII, alpha 1 
COL22A1               0.144   collagen, type XXII, alpha 1 
COL1A2                0.139   alpha 2 type I collagen 
COL4A4                0.139   alpha 4 type IV collagen precursor 
COL4A3                0.139   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.139   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.139   alpha 3 type IV collagen isoform 1 precursor 
COL4A1                0.139   alpha 1 type IV collagen preproprotein 
COL4A3                0.138   alpha 3 type IV collagen isoform 5 precursor 
COL16A1               0.134   alpha 1 type XVI collagen precursor 
LOC100293055          0.133   PREDICTED: similar to COL22A1 protein 
COL4A2                0.133   alpha 2 type IV collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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