Guide to the Human Genome
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Name: PPP1R10 Sequence: fasta or formatted (940aa) NCBI GI: 25777671
Description:

protein phosphatase 1, regulatory subunit 10

Referenced in:

Serine / Threonine Protein Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         39           2
 C cysteine            0.6          6           1
 D aspartate           3.8         36           1
 E glutamate           7.0         66           2
 F phenylalanine       1.8         17           1
 G glycine            16.5        155           5
 H histidine           4.5         42           1
 I isoleucine          2.9         27           2
 K lysine              6.9         65           5
 L leucine             7.1         67           2
 M methionine          2.8         26           2
 N asparagine          3.4         32           2
 P proline            14.1        133           7
 Q glutamine           2.0         19           2
 R arginine            5.6         53           2
 S serine              6.6         62           2
 T threonine           3.8         36           2
 V valine              4.3         40           3
 W tryptophan          0.5          5           1
 Y tyrosine            1.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1, regulatory subunit 10 
COL3A1                0.053   collagen type III alpha 1 preproprotein 
COL2A1                0.048   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.048   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL11A2               0.047   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.047   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.047   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL8A2                0.047   collagen, type VIII, alpha 2 
COL5A2                0.046   alpha 2 type V collagen preproprotein 
COL1A1                0.046   alpha 1 type I collagen preproprotein 
WDR33                 0.046   WD repeat domain 33 isoform 1 
COL1A2                0.045   alpha 2 type I collagen 
COL4A4                0.044   alpha 4 type IV collagen precursor 
COL4A5                0.044   type IV collagen alpha 5 isoform 3 precursor 
COL27A1               0.042   collagen, type XXVII, alpha 1 
COL5A3                0.042   collagen, type V, alpha 3 preproprotein 
COL11A1               0.042   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.042   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.042   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL4A1                0.041   alpha 1 type IV collagen preproprotein 
COL4A5                0.041   type IV collagen alpha 5 isoform 2 precursor 
COL5A1                0.041   alpha 1 type V collagen preproprotein 
COL4A3                0.041   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 1 precursor 
COL17A1               0.040   alpha 1 type XVII collagen 
PRB2                  0.040   proline-rich protein BstNI subfamily 2 
COL9A3                0.040   alpha 3 type IX collagen 
COL4A5                0.040   type IV collagen alpha 5 isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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