Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: WDR33 Sequence: fasta or formatted (1336aa) NCBI GI: 56243590
Description:

WD repeat domain 33 isoform 1

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [326aa] WD repeat domain 33 isoform 2
alt prot [257aa] WD repeat domain 33 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         53           2
 C cysteine            0.5          7           1
 D aspartate           4.8         64           2
 E glutamate           5.8         77           2
 F phenylalanine       3.4         46           2
 G glycine            15.3        204           4
 H histidine           4.0         53           2
 I isoleucine          2.5         33           1
 K lysine              3.8         51           3
 L leucine             5.2         70           2
 M methionine          4.0         53           1
 N asparagine          3.2         43           2
 P proline            14.6        195           3
 Q glutamine           8.0        107           3
 R arginine            7.9        105           2
 S serine              5.0         67           3
 T threonine           2.8         38           2
 V valine              2.7         36           2
 W tryptophan          1.6         22           1
 Y tyrosine            0.9         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 33 isoform 1 
WDR33                 0.169   WD repeat domain 33 isoform 3 
WDR33                 0.145   WD repeat domain 33 isoform 2 
COL5A1                0.083   alpha 1 type V collagen preproprotein 
COL1A1                0.078   alpha 1 type I collagen preproprotein 
COL2A1                0.078   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.078   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A2                0.078   alpha 2 type V collagen preproprotein 
COL11A1               0.077   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.077   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.077   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL3A1                0.076   collagen type III alpha 1 preproprotein 
COL11A2               0.074   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.074   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.074   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL7A1                0.073   alpha 1 type VII collagen precursor 
COL27A1               0.072   collagen, type XXVII, alpha 1 
COL5A3                0.072   collagen, type V, alpha 3 preproprotein 
COL4A5                0.068   type IV collagen alpha 5 isoform 1 precursor 
COL1A2                0.068   alpha 2 type I collagen 
COL4A5                0.067   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.067   type IV collagen alpha 5 isoform 3 precursor 
COL24A1               0.066   collagen, type XXIV, alpha 1 
COL17A1               0.065   alpha 1 type XVII collagen 
COL22A1               0.064   collagen, type XXII, alpha 1 
COL4A1                0.063   alpha 1 type IV collagen preproprotein 
COL4A4                0.063   alpha 4 type IV collagen precursor 
PRB2                  0.063   proline-rich protein BstNI subfamily 2 
COL4A3                0.062   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.062   alpha 3 type IV collagen isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press