Guide to the Human Genome
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Name: PRB2 Sequence: fasta or formatted (416aa) NCBI GI: 209571537
Description:

proline-rich protein BstNI subfamily 2

Referenced in:

Lacrimal and Salivary Glands

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.4         10           1
 C cysteine            0.0          0           0
 D aspartate           1.0          4           1
 E glutamate           1.0          4           2
 F phenylalanine       0.0          0           0
 G glycine            19.7         82           2
 H histidine           0.0          0           0
 I isoleucine          0.5          2           1
 K lysine              6.5         27           1
 L leucine             2.2          9           2
 M methionine          0.2          1           1
 N asparagine          4.6         19           2
 P proline            37.3        155           5
 Q glutamine          14.9         62           2
 R arginine            2.9         12           1
 S serine              6.5         27           2
 T threonine           0.0          0           0
 V valine              0.5          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline-rich protein BstNI subfamily 2 
PRB1                  0.685   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB3                  0.499   proline-rich protein BstNI subfamily 3 precursor [H...
PRB4                  0.388   proline-rich protein BstNI subfamily 4 precursor [Ho...
PRB1                  0.357   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB1                  0.283   proline-rich protein BstNI subfamily 1 isoform 3 pre...
WDR33                 0.195   WD repeat domain 33 isoform 1 
PRH1                  0.183   proline-rich protein HaeIII subfamily 1 
PRH2                  0.181   proline-rich protein HaeIII subfamily 2 
PRH2                  0.181   proline-rich protein HaeIII subfamily 2 
COL5A1                0.177   alpha 1 type V collagen preproprotein 
COL1A1                0.176   alpha 1 type I collagen preproprotein 
COL11A1               0.169   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.169   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.169   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL3A1                0.166   collagen type III alpha 1 preproprotein 
COL11A2               0.165   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.165   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.165   collagen, type XI, alpha 2 isoform 1 preproprotein ...
NACA                  0.164   nascent polypeptide-associated complex alpha subuni...
COL10A1               0.161   type X collagen alpha 1 precursor 
COL17A1               0.160   alpha 1 type XVII collagen 
MLL2                  0.157   myeloid/lymphoid or mixed-lineage leukemia 2 
COL2A1                0.154   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.154   collagen, type II, alpha 1 isoform 2 precursor [Hom...
FMN2                  0.154   formin 2 
COL5A2                0.147   alpha 2 type V collagen preproprotein 
COL7A1                0.147   alpha 1 type VII collagen precursor 
COL4A5                0.144   type IV collagen alpha 5 isoform 1 precursor 
COL8A1                0.143   alpha 1 type VIII collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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