Guide to the Human Genome
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Name: ATAD2 Sequence: fasta or formatted (1390aa) NCBI GI: 24497618
Description:

ATPase family, AAA domain containing 2

Referenced in:

Bromodomain Family
Protein Composition and Structure

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         91           2
 C cysteine            1.7         24           1
 D aspartate           7.8        109          14
 E glutamate           8.7        121           3
 F phenylalanine       3.2         44           2
 G glycine             3.7         51           2
 H histidine           2.4         34           1
 I isoleucine          5.2         72           2
 K lysine              6.8         95           3
 L leucine             8.8        122           3
 M methionine          1.6         22           1
 N asparagine          4.0         56           2
 P proline             4.8         67           3
 Q glutamine           4.7         66           3
 R arginine            8.1        112           3
 S serine              8.6        119           5
 T threonine           5.0         69           2
 V valine              5.5         76           2
 W tryptophan          0.4          5           2
 Y tyrosine            2.5         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase family, AAA domain containing 2 
ATAD2B                0.436   ATPase family, AAA domain containing 2B 
VCP                   0.072   valosin-containing protein 
SPATA5                0.065   spermatogenesis associated 5 
PSMC1                 0.060   proteasome 26S ATPase subunit 1 
PSMC2                 0.058   proteasome 26S ATPase subunit 2 
PSMC5                 0.056   proteasome 26S ATPase subunit 5 
NVL                   0.055   nuclear VCP-like isoform 1 
PSMC6                 0.054   proteasome 26S ATPase subunit 6 
NVL                   0.054   nuclear VCP-like isoform 2 
PSMC3                 0.053   proteasome 26S ATPase subunit 3 
SPATA5L1              0.050   spermatogenesis associated 5-like 1 
KATNAL1               0.049   katanin p60 subunit A-like 1 
KATNAL1               0.049   katanin p60 subunit A-like 1 
PEX6                  0.048   peroxisomal biogenesis factor 6 
LOC652826             0.047   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.047   proteasome 26S ATPase subunit 4 isoform 2 
PSMC4                 0.047   proteasome 26S ATPase subunit 4 isoform 1 
KATNA1                0.047   katanin p60 subunit A 1 
VPS4A                 0.045   vacuolar protein sorting factor 4A 
PEX1                  0.045   peroxin1 
ATAD1                 0.043   ATPase family, AAA domain containing 1 
VPS4B                 0.042   vacuolar protein sorting factor 4B 
AFG3L2                0.042   AFG3 ATPase family gene 3-like 2 
LOC345645             0.041   PREDICTED: similar to hCG2002932 
LOC345645             0.041   PREDICTED: similar to hCG2002932 
LOC345645             0.041   PREDICTED: hypothetical protein LOC345645 
SPAST                 0.041   spastin isoform 2 
SPAST                 0.041   spastin isoform 1 
FIGNL1                0.040   fidgetin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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