Guide to the Human Genome
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Name: NVL Sequence: fasta or formatted (750aa) NCBI GI: 45643125
Description:

nuclear VCP-like isoform 2

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [856aa] nuclear VCP-like isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         61           2
 C cysteine            2.3         17           1
 D aspartate           6.4         48           2
 E glutamate           8.1         61           2
 F phenylalanine       2.9         22           2
 G glycine             6.1         46           2
 H histidine           1.5         11           2
 I isoleucine          5.1         38           2
 K lysine              7.1         53           2
 L leucine            11.1         83           2
 M methionine          2.7         20           1
 N asparagine          3.5         26           2
 P proline             6.1         46           3
 Q glutamine           4.1         31           2
 R arginine            6.5         49           2
 S serine              6.7         50           2
 T threonine           4.3         32           2
 V valine              6.4         48           2
 W tryptophan          0.3          2           1
 Y tyrosine            0.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear VCP-like isoform 2 
NVL                   1.000   nuclear VCP-like isoform 1 
VCP                   0.309   valosin-containing protein 
SPATA5                0.290   spermatogenesis associated 5 
SPATA5L1              0.232   spermatogenesis associated 5-like 1 
PEX6                  0.182   peroxisomal biogenesis factor 6 
PEX1                  0.143   peroxin1 
LOC652826             0.110   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.110   proteasome 26S ATPase subunit 4 isoform 2 
PSMC4                 0.110   proteasome 26S ATPase subunit 4 isoform 1 
AFG3L2                0.105   AFG3 ATPase family gene 3-like 2 
PSMC6                 0.105   proteasome 26S ATPase subunit 6 
PSMC2                 0.104   proteasome 26S ATPase subunit 2 
ATAD2                 0.102   ATPase family, AAA domain containing 2 
PSMC3                 0.101   proteasome 26S ATPase subunit 3 
KATNAL1               0.100   katanin p60 subunit A-like 1 
KATNAL1               0.100   katanin p60 subunit A-like 1 
PSMC1                 0.100   proteasome 26S ATPase subunit 1 
SPG7                  0.099   spastic paraplegia 7 isoform 1 
ATAD2B                0.099   ATPase family, AAA domain containing 2B 
PSMC5                 0.098   proteasome 26S ATPase subunit 5 
KATNA1                0.092   katanin p60 subunit A 1 
YME1L1                0.089   YME1-like 1 isoform 1 
YME1L1                0.089   YME1-like 1 isoform 3 
FIGNL1                0.089   fidgetin-like 1 
FIGNL1                0.089   fidgetin-like 1 
VPS4B                 0.086   vacuolar protein sorting factor 4B 
SPAST                 0.085   spastin isoform 2 
SPAST                 0.085   spastin isoform 1 
ATAD1                 0.084   ATPase family, AAA domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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