Guide to the Human Genome
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Name: SPATA5 Sequence: fasta or formatted (893aa) NCBI GI: 157671927
Description:

spermatogenesis associated 5

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         77           2
 C cysteine            1.2         11           1
 D aspartate           5.6         50           2
 E glutamate           7.6         68           3
 F phenylalanine       3.0         27           2
 G glycine             7.2         64           2
 H histidine           1.0          9           1
 I isoleucine          6.4         57           2
 K lysine              5.9         53           2
 L leucine            11.8        105           2
 M methionine          2.5         22           1
 N asparagine          3.9         35           1
 P proline             5.3         47           2
 Q glutamine           4.1         37           1
 R arginine            5.7         51           2
 S serine              6.8         61           2
 T threonine           4.9         44           2
 V valine              6.0         54           2
 W tryptophan          0.3          3           1
 Y tyrosine            2.0         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spermatogenesis associated 5 
VCP                   0.300   valosin-containing protein 
NVL                   0.246   nuclear VCP-like isoform 2 
NVL                   0.246   nuclear VCP-like isoform 1 
SPATA5L1              0.243   spermatogenesis associated 5-like 1 
PEX6                  0.143   peroxisomal biogenesis factor 6 
PEX1                  0.142   peroxin1 
LOC652826             0.115   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.115   proteasome 26S ATPase subunit 4 isoform 2 
PSMC4                 0.115   proteasome 26S ATPase subunit 4 isoform 1 
PSMC1                 0.114   proteasome 26S ATPase subunit 1 
ATAD2B                0.108   ATPase family, AAA domain containing 2B 
ATAD2                 0.104   ATPase family, AAA domain containing 2 
PSMC6                 0.104   proteasome 26S ATPase subunit 6 
PSMC2                 0.104   proteasome 26S ATPase subunit 2 
PSMC3                 0.102   proteasome 26S ATPase subunit 3 
PSMC5                 0.098   proteasome 26S ATPase subunit 5 
SPG7                  0.091   spastic paraplegia 7 isoform 1 
AFG3L2                0.091   AFG3 ATPase family gene 3-like 2 
SPAST                 0.089   spastin isoform 2 
SPAST                 0.089   spastin isoform 1 
FIGNL1                0.089   fidgetin-like 1 
FIGNL1                0.089   fidgetin-like 1 
KATNAL1               0.086   katanin p60 subunit A-like 1 
KATNAL1               0.086   katanin p60 subunit A-like 1 
KATNA1                0.086   katanin p60 subunit A 1 
LOC345645             0.083   PREDICTED: similar to hCG2002932 
LOC345645             0.083   PREDICTED: similar to hCG2002932 
LOC345645             0.083   PREDICTED: hypothetical protein LOC345645 
NSF                   0.083   vesicle-fusing ATPase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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