PSMC1 23832

Name: PSMC1	Sequence: fasta or formatted (440aa)		NCBI GI: 24430151
Description: proteasome 26S ATPase subunit 1		Referenced in: Proteasome
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.8 21 2 C cysteine 0.7 3 1 D aspartate 7.7 34 2 E glutamate 9.1 40 3 F phenylalanine 2.0 9 1 G glycine 7.7 34 3 H histidine 2.0 9 1 I isoleucine 6.4 28 2 K lysine 10.2 45 5 L leucine 10.2 45 2 M methionine 3.0 13 1 N asparagine 2.3 10 1 P proline 5.7 25 2 Q glutamine 3.4 15 1 R arginine 5.0 22 2 S serine 4.8 21 1 T threonine 5.9 26 1 V valine 6.6 29 2 W tryptophan 0.0 0 0 Y tyrosine 2.5 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasome 26S ATPase subunit 1 LOC345645 0.760 PREDICTED: similar to hCG2002932 LOC345645 0.760 PREDICTED: similar to hCG2002932 LOC345645 0.760 PREDICTED: hypothetical protein LOC345645 LOC652826 0.434 PREDICTED: similar to proteasome 26S ATPase subunit ... PSMC4 0.434 proteasome 26S ATPase subunit 4 isoform 1 PSMC4 0.424 proteasome 26S ATPase subunit 4 isoform 2 PSMC5 0.379 proteasome 26S ATPase subunit 5 PSMC3 0.379 proteasome 26S ATPase subunit 3 PSMC2 0.341 proteasome 26S ATPase subunit 2 PSMC6 0.332 proteasome 26S ATPase subunit 6 SPATA5 0.231 spermatogenesis associated 5 VCP 0.224 valosin-containing protein AFG3L2 0.203 AFG3 ATPase family gene 3-like 2 ATAD2B 0.196 ATPase family, AAA domain containing 2B ATAD2 0.192 ATPase family, AAA domain containing 2 SPATA5L1 0.179 spermatogenesis associated 5-like 1 SPG7 0.174 spastic paraplegia 7 isoform 1 NVL 0.171 nuclear VCP-like isoform 2 NVL 0.171 nuclear VCP-like isoform 1 PEX1 0.170 peroxin1 PEX6 0.168 peroxisomal biogenesis factor 6 KATNA1 0.161 katanin p60 subunit A 1 YME1L1 0.159 YME1-like 1 isoform 1 YME1L1 0.159 YME1-like 1 isoform 3 KATNAL1 0.155 katanin p60 subunit A-like 1 KATNAL1 0.155 katanin p60 subunit A-like 1 FIGNL1 0.145 fidgetin-like 1 FIGNL1 0.145 fidgetin-like 1 NSF 0.142 vesicle-fusing ATPase Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.