VPS4A 35066

Name: VPS4A	Sequence: fasta or formatted (437aa)		NCBI GI: 7019569
Description: vacuolar protein sorting factor 4A		Referenced in: Cytoskeleton ER, Golgi, and the Secretory Pathway
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.8 34 2 C cysteine 1.1 5 1 D aspartate 5.9 26 2 E glutamate 8.2 36 2 F phenylalanine 3.2 14 2 G glycine 5.9 26 1 H histidine 2.3 10 1 I isoleucine 4.6 20 2 K lysine 9.2 40 3 L leucine 9.4 41 2 M methionine 3.2 14 2 N asparagine 4.1 18 3 P proline 5.0 22 2 Q glutamine 3.0 13 1 R arginine 5.3 23 3 S serine 7.6 33 3 T threonine 5.3 23 2 V valine 5.7 25 2 W tryptophan 1.1 5 1 Y tyrosine 2.1 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting factor 4A VPS4B 0.822 vacuolar protein sorting factor 4B KATNAL1 0.269 katanin p60 subunit A-like 1 KATNAL1 0.269 katanin p60 subunit A-like 1 KATNA1 0.263 katanin p60 subunit A 1 KATNAL2 0.257 katanin p60 subunit A-like 2 SPAST 0.238 spastin isoform 2 SPAST 0.238 spastin isoform 1 FIGNL1 0.236 fidgetin-like 1 FIGNL1 0.236 fidgetin-like 1 FIGN 0.167 fidgetin VCP 0.164 valosin-containing protein ATAD1 0.159 ATPase family, AAA domain containing 1 SPATA5 0.157 spermatogenesis associated 5 ATAD2B 0.146 ATPase family, AAA domain containing 2B ATAD2 0.146 ATPase family, AAA domain containing 2 NVL 0.140 nuclear VCP-like isoform 2 NVL 0.140 nuclear VCP-like isoform 1 PSMC5 0.135 proteasome 26S ATPase subunit 5 PSMC1 0.135 proteasome 26S ATPase subunit 1 PSMC6 0.132 proteasome 26S ATPase subunit 6 PEX6 0.130 peroxisomal biogenesis factor 6 PSMC3 0.130 proteasome 26S ATPase subunit 3 SPATA5L1 0.128 spermatogenesis associated 5-like 1 PEX1 0.128 peroxin1 LOC652826 0.121 PREDICTED: similar to proteasome 26S ATPase subunit ... PSMC4 0.121 proteasome 26S ATPase subunit 4 isoform 2 PSMC4 0.121 proteasome 26S ATPase subunit 4 isoform 1 YME1L1 0.121 YME1-like 1 isoform 1 YME1L1 0.121 YME1-like 1 isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.