PSMC4 23833

Name: PSMC4	Sequence: fasta or formatted (387aa)		NCBI GI: 24430155
Description: proteasome 26S ATPase subunit 4 isoform 2		Referenced in: Proteasome
Other entries for this name: alt prot [418aa] proteasome 26S ATPase subunit 4 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.8 30 2 C cysteine 0.5 2 1 D aspartate 7.5 29 1 E glutamate 8.3 32 2 F phenylalanine 3.4 13 1 G glycine 5.4 21 2 H histidine 1.6 6 2 I isoleucine 7.8 30 2 K lysine 6.2 24 2 L leucine 9.3 36 2 M methionine 3.1 12 2 N asparagine 3.1 12 1 P proline 5.4 21 2 Q glutamine 4.4 17 1 R arginine 6.2 24 2 S serine 5.2 20 2 T threonine 4.4 17 2 V valine 7.5 29 2 W tryptophan 0.0 0 0 Y tyrosine 3.1 12 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasome 26S ATPase subunit 4 isoform 2 PSMC4 0.978 proteasome 26S ATPase subunit 4 isoform 1 LOC652826 0.954 PREDICTED: similar to proteasome 26S ATPase subunit ... PSMC1 0.490 proteasome 26S ATPase subunit 1 PSMC5 0.389 proteasome 26S ATPase subunit 5 LOC345645 0.387 PREDICTED: similar to hCG2002932 LOC345645 0.387 PREDICTED: similar to hCG2002932 LOC345645 0.387 PREDICTED: hypothetical protein LOC345645 PSMC3 0.387 proteasome 26S ATPase subunit 3 PSMC6 0.372 proteasome 26S ATPase subunit 6 PSMC2 0.355 proteasome 26S ATPase subunit 2 SPATA5 0.270 spermatogenesis associated 5 VCP 0.232 valosin-containing protein AFG3L2 0.220 AFG3 ATPase family gene 3-like 2 NVL 0.218 nuclear VCP-like isoform 2 NVL 0.218 nuclear VCP-like isoform 1 SPATA5L1 0.203 spermatogenesis associated 5-like 1 SPG7 0.198 spastic paraplegia 7 isoform 1 PEX1 0.180 peroxin1 PEX6 0.180 peroxisomal biogenesis factor 6 ATAD2 0.177 ATPase family, AAA domain containing 2 YME1L1 0.173 YME1-like 1 isoform 1 YME1L1 0.173 YME1-like 1 isoform 3 FIGNL1 0.172 fidgetin-like 1 FIGNL1 0.172 fidgetin-like 1 ATAD2B 0.171 ATPase family, AAA domain containing 2B KATNA1 0.162 katanin p60 subunit A 1 KATNAL1 0.161 katanin p60 subunit A-like 1 KATNAL1 0.161 katanin p60 subunit A-like 1 VPS4B 0.154 vacuolar protein sorting factor 4B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.