LOC652826 36863

Name: LOC652826	Sequence: fasta or formatted (414aa)		NCBI GI: 89064750
Description: PREDICTED: similar to proteasome 26S ATPase subunit 4		Referenced in: Proteasome
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 31 2 C cysteine 0.5 2 1 D aspartate 7.2 30 1 E glutamate 8.9 37 2 F phenylalanine 3.6 15 1 G glycine 4.8 20 2 H histidine 1.9 8 2 I isoleucine 7.2 30 2 K lysine 6.8 28 2 L leucine 9.7 40 2 M methionine 2.9 12 2 N asparagine 3.1 13 1 P proline 5.3 22 2 Q glutamine 5.3 22 2 R arginine 5.8 24 2 S serine 4.8 20 2 T threonine 4.1 17 2 V valine 7.0 29 2 W tryptophan 0.2 1 1 Y tyrosine 3.1 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to proteasome 26S ATPase subunit ... PSMC4 0.981 proteasome 26S ATPase subunit 4 isoform 1 PSMC4 0.885 proteasome 26S ATPase subunit 4 isoform 2 PSMC1 0.466 proteasome 26S ATPase subunit 1 LOC345645 0.370 PREDICTED: similar to hCG2002932 LOC345645 0.370 PREDICTED: similar to hCG2002932 LOC345645 0.370 PREDICTED: hypothetical protein LOC345645 PSMC3 0.368 proteasome 26S ATPase subunit 3 PSMC5 0.368 proteasome 26S ATPase subunit 5 PSMC6 0.356 proteasome 26S ATPase subunit 6 PSMC2 0.329 proteasome 26S ATPase subunit 2 SPATA5 0.251 spermatogenesis associated 5 VCP 0.215 valosin-containing protein AFG3L2 0.204 AFG3 ATPase family gene 3-like 2 NVL 0.203 nuclear VCP-like isoform 2 NVL 0.203 nuclear VCP-like isoform 1 SPATA5L1 0.189 spermatogenesis associated 5-like 1 SPG7 0.184 spastic paraplegia 7 isoform 1 PEX1 0.167 peroxin1 PEX6 0.167 peroxisomal biogenesis factor 6 ATAD2 0.165 ATPase family, AAA domain containing 2 YME1L1 0.161 YME1-like 1 isoform 1 YME1L1 0.161 YME1-like 1 isoform 3 FIGNL1 0.159 fidgetin-like 1 FIGNL1 0.159 fidgetin-like 1 ATAD2B 0.158 ATPase family, AAA domain containing 2B KATNA1 0.151 katanin p60 subunit A 1 KATNAL1 0.149 katanin p60 subunit A-like 1 KATNAL1 0.149 katanin p60 subunit A-like 1 VPS4B 0.143 vacuolar protein sorting factor 4B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.