Guide to the Human Genome
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Name: LOC345645 Sequence: fasta or formatted (415aa) NCBI GI: 169167838
Description:

PREDICTED: similar to hCG2002932

Not currently referenced in the text

Other entries for this name:
alt mRNA {415aa} PREDICTED: hypothetical protein LOC345645
alt mRNA {415aa} PREDICTED: similar to hCG2002932
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         21           2
 C cysteine            1.0          4           1
 D aspartate           6.3         26           2
 E glutamate          11.1         46           2
 F phenylalanine       2.4         10           1
 G glycine             6.5         27           2
 H histidine           2.9         12           1
 I isoleucine          7.2         30           2
 K lysine              8.4         35           2
 L leucine            10.6         44           2
 M methionine          3.6         15           2
 N asparagine          2.2          9           1
 P proline             4.6         19           2
 Q glutamine           4.1         17           2
 R arginine            4.1         17           1
 S serine              4.6         19           1
 T threonine           5.8         24           1
 V valine              7.5         31           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2002932 
LOC345645             1.000   PREDICTED: similar to hCG2002932 
LOC345645             1.000   PREDICTED: hypothetical protein LOC345645 
PSMC1                 0.813   proteasome 26S ATPase subunit 1 
LOC652826             0.369   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.369   proteasome 26S ATPase subunit 4 isoform 1 
PSMC4                 0.359   proteasome 26S ATPase subunit 4 isoform 2 
PSMC5                 0.323   proteasome 26S ATPase subunit 5 
PSMC3                 0.322   proteasome 26S ATPase subunit 3 
PSMC2                 0.287   proteasome 26S ATPase subunit 2 
PSMC6                 0.273   proteasome 26S ATPase subunit 6 
SPATA5                0.181   spermatogenesis associated 5 
VCP                   0.165   valosin-containing protein 
AFG3L2                0.159   AFG3 ATPase family gene 3-like 2 
ATAD2B                0.152   ATPase family, AAA domain containing 2B 
SPATA5L1              0.150   spermatogenesis associated 5-like 1 
ATAD2                 0.143   ATPase family, AAA domain containing 2 
PEX1                  0.134   peroxin1 
NVL                   0.131   nuclear VCP-like isoform 2 
NVL                   0.131   nuclear VCP-like isoform 1 
SPG7                  0.126   spastic paraplegia 7 isoform 1 
PEX6                  0.112   peroxisomal biogenesis factor 6 
YME1L1                0.111   YME1-like 1 isoform 1 
YME1L1                0.111   YME1-like 1 isoform 3 
LOC728806             0.110   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
KATNA1                0.110   katanin p60 subunit A 1 
NSF                   0.110   vesicle-fusing ATPase 
KATNAL1               0.105   katanin p60 subunit A-like 1 
KATNAL1               0.105   katanin p60 subunit A-like 1 
KATNAL2               0.101   katanin p60 subunit A-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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