SPAST 2221

Name: SPAST	Sequence: fasta or formatted (616aa)		NCBI GI: 11875211
Description: spastin isoform 1		Referenced in: Cytoskeleton
Other entries for this name: alt prot [584aa] spastin isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.1 62 2 C cysteine 1.0 6 1 D aspartate 4.1 25 2 E glutamate 6.2 38 2 F phenylalanine 3.6 22 2 G glycine 7.3 45 2 H histidine 1.5 9 2 I isoleucine 3.4 21 2 K lysine 7.3 45 3 L leucine 10.7 66 4 M methionine 2.3 14 2 N asparagine 4.1 25 1 P proline 7.3 45 4 Q glutamine 3.7 23 1 R arginine 6.8 42 2 S serine 7.6 47 2 T threonine 5.2 32 2 V valine 5.7 35 1 W tryptophan 0.5 3 1 Y tyrosine 1.8 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 spastin isoform 1 SPAST 0.931 spastin isoform 2 FIGNL1 0.261 fidgetin-like 1 FIGNL1 0.261 fidgetin-like 1 KATNA1 0.186 katanin p60 subunit A 1 FIGN 0.182 fidgetin KATNAL1 0.181 katanin p60 subunit A-like 1 KATNAL1 0.181 katanin p60 subunit A-like 1 VPS4B 0.177 vacuolar protein sorting factor 4B VPS4A 0.170 vacuolar protein sorting factor 4A KATNAL2 0.160 katanin p60 subunit A-like 2 ATAD1 0.140 ATPase family, AAA domain containing 1 FIGNL2 0.130 fidgetin-like 2 SPATA5 0.128 spermatogenesis associated 5 VCP 0.112 valosin-containing protein NVL 0.104 nuclear VCP-like isoform 2 NVL 0.104 nuclear VCP-like isoform 1 PSMC5 0.101 proteasome 26S ATPase subunit 5 PSMC6 0.100 proteasome 26S ATPase subunit 6 PSMC1 0.098 proteasome 26S ATPase subunit 1 PSMC3 0.098 proteasome 26S ATPase subunit 3 ATAD2 0.094 ATPase family, AAA domain containing 2 LOC652826 0.093 PREDICTED: similar to proteasome 26S ATPase subunit ... PSMC4 0.093 proteasome 26S ATPase subunit 4 isoform 2 PSMC4 0.093 proteasome 26S ATPase subunit 4 isoform 1 ATAD2B 0.093 ATPase family, AAA domain containing 2B PEX6 0.092 peroxisomal biogenesis factor 6 SPATA5L1 0.090 spermatogenesis associated 5-like 1 PEX1 0.090 peroxin1 AFG3L2 0.089 AFG3 ATPase family gene 3-like 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.