VPS4B 9639

Name: VPS4B	Sequence: fasta or formatted (444aa)		NCBI GI: 17865802
Description: vacuolar protein sorting factor 4B		Referenced in: Cytoskeleton ER, Golgi, and the Secretory Pathway
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.1 36 2 C cysteine 0.7 3 1 D aspartate 6.5 29 2 E glutamate 7.9 35 2 F phenylalanine 3.4 15 2 G glycine 6.8 30 1 H histidine 1.8 8 1 I isoleucine 5.0 22 2 K lysine 9.5 42 3 L leucine 9.7 43 2 M methionine 1.8 8 1 N asparagine 3.8 17 2 P proline 5.6 25 2 Q glutamine 4.3 19 1 R arginine 4.7 21 3 S serine 7.4 33 3 T threonine 4.3 19 2 V valine 5.6 25 2 W tryptophan 1.1 5 1 Y tyrosine 2.0 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting factor 4B VPS4A 0.812 vacuolar protein sorting factor 4A KATNAL1 0.257 katanin p60 subunit A-like 1 KATNAL1 0.257 katanin p60 subunit A-like 1 KATNAL2 0.255 katanin p60 subunit A-like 2 KATNA1 0.253 katanin p60 subunit A 1 SPAST 0.245 spastin isoform 2 SPAST 0.245 spastin isoform 1 FIGNL1 0.234 fidgetin-like 1 FIGNL1 0.234 fidgetin-like 1 ATAD1 0.176 ATPase family, AAA domain containing 1 FIGN 0.167 fidgetin VCP 0.156 valosin-containing protein SPATA5 0.150 spermatogenesis associated 5 NVL 0.145 nuclear VCP-like isoform 2 NVL 0.145 nuclear VCP-like isoform 1 ATAD2B 0.138 ATPase family, AAA domain containing 2B ATAD2 0.135 ATPase family, AAA domain containing 2 PSMC6 0.134 proteasome 26S ATPase subunit 6 PSMC3 0.134 proteasome 26S ATPase subunit 3 LOC652826 0.131 PREDICTED: similar to proteasome 26S ATPase subunit ... PSMC4 0.131 proteasome 26S ATPase subunit 4 isoform 2 PSMC4 0.131 proteasome 26S ATPase subunit 4 isoform 1 PSMC5 0.130 proteasome 26S ATPase subunit 5 PSMC1 0.129 proteasome 26S ATPase subunit 1 SPATA5L1 0.128 spermatogenesis associated 5-like 1 YME1L1 0.124 YME1-like 1 isoform 1 YME1L1 0.124 YME1-like 1 isoform 3 PEX6 0.124 peroxisomal biogenesis factor 6 PSMC2 0.123 proteasome 26S ATPase subunit 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.