PSMC3 12909

Name: PSMC3	Sequence: fasta or formatted (439aa)		NCBI GI: 21361144
Description: proteasome 26S ATPase subunit 3		Referenced in: Proteasome
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 35 2 C cysteine 1.1 5 1 D aspartate 7.1 31 2 E glutamate 9.3 41 2 F phenylalanine 2.3 10 1 G glycine 5.7 25 2 H histidine 0.9 4 1 I isoleucine 6.6 29 2 K lysine 8.2 36 3 L leucine 10.3 45 2 M methionine 3.4 15 1 N asparagine 4.1 18 1 P proline 4.6 20 2 Q glutamine 5.0 22 1 R arginine 5.2 23 2 S serine 3.6 16 1 T threonine 5.2 23 1 V valine 6.8 30 1 W tryptophan 0.2 1 1 Y tyrosine 2.3 10 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasome 26S ATPase subunit 3 PSMC1 0.384 proteasome 26S ATPase subunit 1 PSMC5 0.350 proteasome 26S ATPase subunit 5 LOC652826 0.349 PREDICTED: similar to proteasome 26S ATPase subunit ... PSMC4 0.349 proteasome 26S ATPase subunit 4 isoform 1 PSMC4 0.340 proteasome 26S ATPase subunit 4 isoform 2 PSMC2 0.325 proteasome 26S ATPase subunit 2 PSMC6 0.309 proteasome 26S ATPase subunit 6 LOC345645 0.305 PREDICTED: similar to hCG2002932 LOC345645 0.305 PREDICTED: similar to hCG2002932 LOC345645 0.305 PREDICTED: hypothetical protein LOC345645 SPATA5 0.210 spermatogenesis associated 5 VCP 0.205 valosin-containing protein AFG3L2 0.195 AFG3 ATPase family gene 3-like 2 NVL 0.176 nuclear VCP-like isoform 2 NVL 0.176 nuclear VCP-like isoform 1 ATAD2 0.172 ATPase family, AAA domain containing 2 SPATA5L1 0.171 spermatogenesis associated 5-like 1 PEX6 0.171 peroxisomal biogenesis factor 6 SPG7 0.168 spastic paraplegia 7 isoform 1 PEX1 0.168 peroxin1 ATAD2B 0.165 ATPase family, AAA domain containing 2B YME1L1 0.162 YME1-like 1 isoform 1 YME1L1 0.162 YME1-like 1 isoform 3 KATNAL1 0.157 katanin p60 subunit A-like 1 KATNAL1 0.157 katanin p60 subunit A-like 1 KATNA1 0.156 katanin p60 subunit A 1 ATAD1 0.145 ATPase family, AAA domain containing 1 KATNAL2 0.140 katanin p60 subunit A-like 2 SPAST 0.140 spastin isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.