PSMC4 33380

Name: PSMC4	Sequence: fasta or formatted (418aa)		NCBI GI: 5729991
Description: proteasome 26S ATPase subunit 4 isoform 1		Referenced in: Proteasome
Other entries for this name: alt prot [387aa] proteasome 26S ATPase subunit 4 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.4 31 2 C cysteine 0.5 2 1 D aspartate 7.2 30 1 E glutamate 9.3 39 2 F phenylalanine 3.6 15 1 G glycine 5.0 21 2 H histidine 1.7 7 2 I isoleucine 7.4 31 2 K lysine 6.9 29 2 L leucine 9.8 41 2 M methionine 2.9 12 2 N asparagine 3.1 13 1 P proline 5.0 21 2 Q glutamine 5.3 22 2 R arginine 5.7 24 2 S serine 4.8 20 2 T threonine 4.1 17 2 V valine 7.2 30 2 W tryptophan 0.0 0 0 Y tyrosine 3.1 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasome 26S ATPase subunit 4 isoform 1 LOC652826 0.977 PREDICTED: similar to proteasome 26S ATPase subunit ... PSMC4 0.904 proteasome 26S ATPase subunit 4 isoform 2 PSMC1 0.464 proteasome 26S ATPase subunit 1 LOC345645 0.368 PREDICTED: similar to hCG2002932 LOC345645 0.368 PREDICTED: similar to hCG2002932 LOC345645 0.368 PREDICTED: hypothetical protein LOC345645 PSMC3 0.367 proteasome 26S ATPase subunit 3 PSMC5 0.367 proteasome 26S ATPase subunit 5 PSMC6 0.354 proteasome 26S ATPase subunit 6 PSMC2 0.328 proteasome 26S ATPase subunit 2 SPATA5 0.250 spermatogenesis associated 5 VCP 0.214 valosin-containing protein AFG3L2 0.203 AFG3 ATPase family gene 3-like 2 NVL 0.202 nuclear VCP-like isoform 2 NVL 0.202 nuclear VCP-like isoform 1 SPATA5L1 0.188 spermatogenesis associated 5-like 1 SPG7 0.183 spastic paraplegia 7 isoform 1 PEX1 0.166 peroxin1 PEX6 0.166 peroxisomal biogenesis factor 6 ATAD2 0.164 ATPase family, AAA domain containing 2 YME1L1 0.160 YME1-like 1 isoform 1 YME1L1 0.160 YME1-like 1 isoform 3 FIGNL1 0.159 fidgetin-like 1 FIGNL1 0.159 fidgetin-like 1 ATAD2B 0.158 ATPase family, AAA domain containing 2B KATNA1 0.150 katanin p60 subunit A 1 KATNAL1 0.149 katanin p60 subunit A-like 1 KATNAL1 0.149 katanin p60 subunit A-like 1 VPS4B 0.142 vacuolar protein sorting factor 4B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.