Guide to the Human Genome
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Name: FIGNL1 Sequence: fasta or formatted (674aa) NCBI GI: 31742536
Description:

fidgetin-like 1

Referenced in:

Cytoskeleton

Other entries for this name:
alt mRNA [674aa] fidgetin-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         54           2
 C cysteine            2.1         14           2
 D aspartate           4.7         32           1
 E glutamate           6.5         44           3
 F phenylalanine       4.0         27           2
 G glycine             6.7         45           2
 H histidine           1.3          9           1
 I isoleucine          6.2         42           2
 K lysine              7.1         48           2
 L leucine             7.3         49           2
 M methionine          1.9         13           2
 N asparagine          4.5         30           2
 P proline             6.1         41           2
 Q glutamine           5.6         38           2
 R arginine            4.6         31           3
 S serine              9.8         66           3
 T threonine           5.2         35           2
 V valine              5.2         35           2
 W tryptophan          1.2          8           1
 Y tyrosine            1.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fidgetin-like 1 
FIGNL1                1.000   fidgetin-like 1 
FIGN                  0.269   fidgetin 
SPAST                 0.235   spastin isoform 2 
SPAST                 0.235   spastin isoform 1 
KATNAL1               0.173   katanin p60 subunit A-like 1 
KATNAL1               0.173   katanin p60 subunit A-like 1 
KATNA1                0.172   katanin p60 subunit A 1 
FIGNL2                0.165   fidgetin-like 2 
VPS4B                 0.152   vacuolar protein sorting factor 4B 
VPS4A                 0.151   vacuolar protein sorting factor 4A 
KATNAL2               0.149   katanin p60 subunit A-like 2 
ATAD1                 0.125   ATPase family, AAA domain containing 1 
SPATA5                0.115   spermatogenesis associated 5 
VCP                   0.109   valosin-containing protein 
SPATA5L1              0.102   spermatogenesis associated 5-like 1 
NVL                   0.097   nuclear VCP-like isoform 2 
NVL                   0.097   nuclear VCP-like isoform 1 
LOC652826             0.095   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.095   proteasome 26S ATPase subunit 4 isoform 2 
PSMC4                 0.095   proteasome 26S ATPase subunit 4 isoform 1 
PSMC1                 0.093   proteasome 26S ATPase subunit 1 
PSMC6                 0.091   proteasome 26S ATPase subunit 6 
PSMC5                 0.090   proteasome 26S ATPase subunit 5 
PSMC3                 0.087   proteasome 26S ATPase subunit 3 
PSMC2                 0.086   proteasome 26S ATPase subunit 2 
ATAD2B                0.084   ATPase family, AAA domain containing 2B 
ATAD2                 0.083   ATPase family, AAA domain containing 2 
PEX6                  0.081   peroxisomal biogenesis factor 6 
PEX1                  0.078   peroxin1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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