Guide to the Human Genome
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Name: SPATA5L1 Sequence: fasta or formatted (753aa) NCBI GI: 229577436
Description:

spermatogenesis associated 5-like 1

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         76           2
 C cysteine            2.0         15           1
 D aspartate           5.2         39           1
 E glutamate           6.0         45           2
 F phenylalanine       2.9         22           2
 G glycine             8.2         62           2
 H histidine           1.2          9           1
 I isoleucine          3.6         27           2
 K lysine              4.0         30           2
 L leucine            13.8        104           3
 M methionine          1.2          9           1
 N asparagine          2.1         16           1
 P proline             8.1         61           3
 Q glutamine           3.2         24           2
 R arginine            7.8         59           2
 S serine              7.0         53           2
 T threonine           4.2         32           2
 V valine              8.0         60           4
 W tryptophan          0.7          5           1
 Y tyrosine            0.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spermatogenesis associated 5-like 1 
SPATA5                0.286   spermatogenesis associated 5 
VCP                   0.275   valosin-containing protein 
NVL                   0.234   nuclear VCP-like isoform 2 
NVL                   0.234   nuclear VCP-like isoform 1 
PEX6                  0.159   peroxisomal biogenesis factor 6 
PEX1                  0.147   peroxin1 
PSMC5                 0.113   proteasome 26S ATPase subunit 5 
PSMC6                 0.109   proteasome 26S ATPase subunit 6 
PSMC1                 0.104   proteasome 26S ATPase subunit 1 
ATAD2B                0.103   ATPase family, AAA domain containing 2B 
LOC652826             0.102   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.102   proteasome 26S ATPase subunit 4 isoform 2 
PSMC4                 0.102   proteasome 26S ATPase subunit 4 isoform 1 
PSMC3                 0.098   proteasome 26S ATPase subunit 3 
KATNAL1               0.098   katanin p60 subunit A-like 1 
KATNAL1               0.098   katanin p60 subunit A-like 1 
PSMC2                 0.098   proteasome 26S ATPase subunit 2 
KATNA1                0.097   katanin p60 subunit A 1 
AFG3L2                0.097   AFG3 ATPase family gene 3-like 2 
ATAD2                 0.094   ATPase family, AAA domain containing 2 
FIGNL1                0.093   fidgetin-like 1 
FIGNL1                0.093   fidgetin-like 1 
YME1L1                0.091   YME1-like 1 isoform 1 
YME1L1                0.091   YME1-like 1 isoform 3 
SPG7                  0.090   spastic paraplegia 7 isoform 1 
NSF                   0.084   vesicle-fusing ATPase 
LOC345645             0.082   PREDICTED: similar to hCG2002932 
LOC345645             0.082   PREDICTED: similar to hCG2002932 
LOC345645             0.082   PREDICTED: hypothetical protein LOC345645 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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