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Search of human proteins with 239755074
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755074 PREDICTED: hypothetical protein [Homo sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755074 PREDICTED: hypothetical protein [Homo sapiens] 344 2e-95
gi|239749600 PREDICTED: hypothetical protein XP_002347101 [Homo ... 344 2e-95
gi|239743867 PREDICTED: hypothetical protein XP_002342984 [Homo ... 344 2e-95
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 47 7e-06
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 41 5e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 9e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 40 0.001
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 40 0.001
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 40 0.001
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 38 0.003
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 38 0.003
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 38 0.003
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 38 0.003
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 38 0.003
gi|115511036 alpha-kinase 3 [Homo sapiens] 38 0.003
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 38 0.003
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 38 0.003
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.004
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.004
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 38 0.004
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 37 0.007
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 37 0.007
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 37 0.007
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens] 37 0.009
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 37 0.009
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 36 0.012
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 36 0.012
gi|48762934 alpha 2 type I collagen [Homo sapiens] 36 0.012
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 36 0.012
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 36 0.012
>gi|239755074 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 344 bits (882), Expect = 2e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG
Sbjct: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVH 120
EQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVH
Sbjct: 61 EQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVH 120
Query: 121 DHRLENHVPQPWWARQPARALLLPPPSPRPSLESNTLPCR 160
DHRLENHVPQPWWARQPARALLLPPPSPRPSLESNTLPCR
Sbjct: 121 DHRLENHVPQPWWARQPARALLLPPPSPRPSLESNTLPCR 160
>gi|239749600 PREDICTED: hypothetical protein XP_002347101 [Homo
sapiens]
Length = 160
Score = 344 bits (882), Expect = 2e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG
Sbjct: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVH 120
EQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVH
Sbjct: 61 EQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVH 120
Query: 121 DHRLENHVPQPWWARQPARALLLPPPSPRPSLESNTLPCR 160
DHRLENHVPQPWWARQPARALLLPPPSPRPSLESNTLPCR
Sbjct: 121 DHRLENHVPQPWWARQPARALLLPPPSPRPSLESNTLPCR 160
>gi|239743867 PREDICTED: hypothetical protein XP_002342984 [Homo
sapiens]
Length = 160
Score = 344 bits (882), Expect = 2e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG
Sbjct: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVH 120
EQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVH
Sbjct: 61 EQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVH 120
Query: 121 DHRLENHVPQPWWARQPARALLLPPPSPRPSLESNTLPCR 160
DHRLENHVPQPWWARQPARALLLPPPSPRPSLESNTLPCR
Sbjct: 121 DHRLENHVPQPWWARQPARALLLPPPSPRPSLESNTLPCR 160
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.0 bits (110), Expect = 7e-06
Identities = 39/107 (36%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS--PGLERQTHGAHGGRRQVAAPG 60
G KG+G P G+ P R P G GP+ PG Q +G GG+ + APG
Sbjct: 777 GDKGEGGAPGLPGIAGP----RGSPGERGETGPPGPAGFPGAPGQ-NGEPGGKGERGAPG 831
Query: 61 EQGARSPEN-AGRRSGSETAG-------KHERPGSGGGGLLTFPDAQ 99
E+G P AG GS AG K ER GG G FP A+
Sbjct: 832 EKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGAR 878
Score = 41.6 bits (96), Expect = 3e-04
Identities = 39/118 (33%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLK--PDRAGPGVENG----PSPGLERQTHGAHGGRRQV 56
G G G D G PP P L+ P GP ENG P P + GA GG+
Sbjct: 621 GPTGPGGDKGDTG---PPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDA 677
Query: 57 AAPGEQGARSPENA----------GRRSGSETAGKHERPGSGG-GGLLTFPDAQRELG 103
APGE+G A G G AG PG+ G GL P + LG
Sbjct: 678 GAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLG 735
Score = 37.4 bits (85), Expect = 0.006
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG +G +P ++GV P + GPG + P P G+ G + PG
Sbjct: 515 AGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP------PGSQGESGRPGPPGP 568
Query: 62 QGARSPENA----GRRSGSETAGKH-ERPGSGGGGLLTFPDAQRELG 103
G R G + GK+ ER G GG G P E G
Sbjct: 569 SGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETG 615
Score = 34.3 bits (77), Expect = 0.047
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG G P + G + P P K + GPG + P R G G PG+
Sbjct: 719 AGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGD 778
Query: 62 QGARS----PENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELG 103
+G P AG R G+ PG G FP A + G
Sbjct: 779 KGEGGAPGLPGIAGPRGSPGERGETGPPGPAG-----FPGAPGQNG 819
Score = 33.9 bits (76), Expect = 0.061
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG+ P + G P P +R PG+ P R GA G Q PG
Sbjct: 282 GLKGENGLPGENGAPGPMGPRGAPGERGRPGL---PGAAGARGNDGARGSDGQPGPPGPP 338
Query: 63 G-ARSPENAGRRSGSETAGKHERPGSGG 89
G A P + G + AG PGS G
Sbjct: 339 GTAGFPGSPGAKGEVGPAGS---PGSNG 363
Score = 33.9 bits (76), Expect = 0.061
Identities = 33/117 (28%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG G P Q G P A + PG+ P E G G APG
Sbjct: 356 AGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG------APGL 409
Query: 62 QGARSPEN-------AGRRSGSETAGKHERPGS-------GGGGLLTFPDAQRELGR 104
GAR P G R G+ GK+ G G G+ P A+ E G+
Sbjct: 410 MGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGK 466
Score = 33.1 bits (74), Expect = 0.10
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG +G +G PP P PG + P ++GA G R + G
Sbjct: 317 AGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGH 376
Query: 62 QGARSPENAGRRSGSETAGKHERPGSG 88
GA+ P +GS GK E +G
Sbjct: 377 AGAQGPPGPPGINGS-PGGKGEMGPAG 402
Score = 32.7 bits (73), Expect = 0.14
Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G+ P +G P P R PGV P P + GA G + PG
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGP---KGNDGAPGKNGERGGPGGP 602
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGG 90
G + P +G + PG G
Sbjct: 603 GPQGPPGKNGETGPQGPPGPTGPGGDKG 630
Score = 32.3 bits (72), Expect = 0.18
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGV-----ENGP--SPGLERQTHGAHGGRRQ 55
G +G +P + G P P + + PGV E+G SPG E +G G +
Sbjct: 426 GLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPG-EPGANGLPGAAGE 484
Query: 56 VAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
APG +G P G AG+ PG G
Sbjct: 485 RGAPGFRGPAGPNGIPGEKG--PAGERGAPGPAG 516
Score = 32.0 bits (71), Expect = 0.23
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENG----PSPGLERQTHGAHGGRRQVAA 58
GG G P + G P P P GPG + G P P + G G +
Sbjct: 600 GGPGPQGPPGKNGETGPQGP----PGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGK 655
Query: 59 PGEQG----ARSPENAGRRSGSETAGKHERPGSGG 89
PGE G A +P G + + G+ PG G
Sbjct: 656 PGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAG 690
Score = 32.0 bits (71), Expect = 0.23
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
GGKG P G P + +R G G SPG + G GG PG+
Sbjct: 705 GGKGAAGPPGPPGAAGTPGLQGMPGERGGLG-----SPG-PKGDKGEPGGPGADGVPGKD 758
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G R P G AG+ G GG
Sbjct: 759 GPRGP--TGPIGPPGPAGQPGDKGEGG 783
Score = 31.2 bits (69), Expect = 0.40
Identities = 28/109 (25%), Positives = 35/109 (32%), Gaps = 22/109 (20%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGV-----------------ENG----PSPG 41
G G P G PP P +K +R PG NG P P
Sbjct: 837 GPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPS 896
Query: 42 LERQTHGAHGGRRQVAAPGEQGARSPE-NAGRRSGSETAGKHERPGSGG 89
G G APG G P+ +AG+ + G PG+ G
Sbjct: 897 GSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPG 945
Score = 30.8 bits (68), Expect = 0.52
Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 18/99 (18%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGL-----------ERQTHGAH 50
AG G+ P + G P P +K PG PG+ E+ GA
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGF-----PGMKGHRGFDGRNGEKGETGAP 281
Query: 51 GGRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
G + + PGE GA P G R G+ PG+ G
Sbjct: 282 GLKGENGLPGENGAPGP--MGPRGAPGERGRPGLPGAAG 318
Score = 30.8 bits (68), Expect = 0.52
Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 19/92 (20%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
GGKG P + G PP A PG+ G P G GG+ PG
Sbjct: 672 GGKGDAGAPGERG---PPGLA------GAPGLRGGAGP------PGPEGGKGAAGPPGPP 716
Query: 63 GARSPEN----AGRRSGSETAGKHERPGSGGG 90
GA G R G + G G GG
Sbjct: 717 GAAGTPGLQGMPGERGGLGSPGPKGDKGEPGG 748
Score = 30.4 bits (67), Expect = 0.68
Identities = 25/94 (26%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P G V P + + + G P P R G G R GE+
Sbjct: 1041 GAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGER 1100
Query: 63 GARS-------PENAGRRSGSETAGKHERPGSGG 89
GA P N G AG+ GS G
Sbjct: 1101 GAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPG 1134
Score = 29.3 bits (64), Expect = 1.5
Identities = 30/108 (27%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSP----GLERQTHGAHGGRRQVAA 58
G G P GV P A ++ PG + P G+ T GA G
Sbjct: 906 GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGIT-GARGLAGPPGM 964
Query: 59 PGEQGARSPENAGRRSGSETAG--KHERPGSGGGGLLTFPDAQRELGR 104
PG +G+ P+ SG A ER G GL E GR
Sbjct: 965 PGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGR 1012
Score = 28.1 bits (61), Expect = 3.4
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAP-- 59
AG G+ P +G P P + G+ P R + G G + + P
Sbjct: 926 AGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGA 985
Query: 60 ----GEQGARSPENAGRRSGSETAGKHERPGSGG 89
GE+G P+ +G TAG+ R G+ G
Sbjct: 986 NGLSGERGPPGPQGLPGLAG--TAGEPGRDGNPG 1017
Score = 26.6 bits (57), Expect = 9.8
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G + G P P + ++ G P P R GA G + PG
Sbjct: 477 GLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPR---GAAGEPGRDGVPGGP 533
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G R + GS+ GK PGS G
Sbjct: 534 GMRGMPGSPGGPGSD--GKPGPPGSQG 558
Score = 26.6 bits (57), Expect = 9.8
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS-PGLERQTHGAHGGRRQVAAPG 60
AG G + G P PA + PG + P PG+ R G+ GG PG
Sbjct: 494 AGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGM-RGMPGSPGGPGSDGKPG 552
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
G++ +GR +G +PG G
Sbjct: 553 PPGSQG--ESGRPGPPGPSGPRGQPGVMG 579
Score = 26.6 bits (57), Expect = 9.8
Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
M G +G +G P L +R PG + P G G PG
Sbjct: 964 MPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPG 1023
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
G SP G R + + G PG G
Sbjct: 1024 RDG--SPGGKGDRGENGSPGAPGAPGHPG 1050
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 40.8 bits (94), Expect = 5e-04
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 7 QGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAP----GEQ 62
+G DP +G P P R P R GP GP PG + G GG P G +
Sbjct: 674 RGGDPFWDG---PGDPMRGGPMRGGP----GPGPGPYHRGRGGRGGNEPPPPPPPFRGAR 726
Query: 63 GARS----PENAGRRSGSETAGKHERPGSGGGG 91
G RS P G G G RP G GG
Sbjct: 727 GGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGG 759
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 31 GPGVENGPSPGL---ERQTHGAHGGRRQVAAPGEQGA--RSPENAGRRSGSETAGKHERP 85
GPG G S G E HG G R PG +G R P R H+ P
Sbjct: 834 GPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRG-------HDGP 886
Query: 86 GSGGGG 91
G GGGG
Sbjct: 887 GHGGGG 892
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.0 bits (92), Expect = 9e-04
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
+G +G+ P + GV PP PA + PG + G+ G PGE
Sbjct: 673 SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGE 732
Query: 62 QGARS-PENAGRRSGSETAGKHERPGSGGGGLLTFP 96
+GA P G R + G PG G LT P
Sbjct: 733 RGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP 768
Score = 37.7 bits (86), Expect = 0.004
Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 2 AGGKGQGWDPAQEGV------VSPPRPARLKPDRAGPGVENGPS-PGLERQTHGAHGGRR 54
AG KG P ++GV + PP PA D+ E+GPS P GA G R
Sbjct: 748 AGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKG----ESGPSGPAGPTGARGAPGDRG 803
Query: 55 QVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
+ PG G P A + G++ PG G
Sbjct: 804 EPGPPGPAGFAGPPGADGQPGAK-----GEPGDAG 833
Score = 36.6 bits (83), Expect = 0.009
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 8 GWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQGARSP 67
G+D G +S P P R PG P P + G G + A G G R P
Sbjct: 166 GYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGP---QGFQGPPGEPGEPGASGPMGPRGP 222
Query: 68 ENAGRRSGSE-TAGKHERPGSGG 89
++G + AGK RPG G
Sbjct: 223 PGPPGKNGDDGEAGKPGRPGERG 245
Score = 36.2 bits (82), Expect = 0.012
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPA--RLKPDRAGPGVENGPS--PGLERQTHGAHGGRRQVAA 58
GG G P +GV P PA R P AGP G + PG E GA G +
Sbjct: 488 GGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG-EAGLPGAKGLTGSPGS 546
Query: 59 PGEQGARSPENAGRRSGSETAGKHERPGS-GGGGLLTFPDAQRELG 103
PG G P + G G PG+ G G++ FP + G
Sbjct: 547 PGPDGKTGPPGPAGQDG--RPGPPGPPGARGQAGVMGFPGPKGAAG 590
Score = 35.0 bits (79), Expect = 0.027
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARL--KPDRAG-PGVENGPSPGLERQTHGAHGGRRQVAAP 59
G +G P +G+ P P KP G PG P P R G G R P
Sbjct: 632 GEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPP 691
Query: 60 GEQGARSPENAGRRSGSE-TAGKHERPGS-GGGGLLTFPDAQRELG 103
G G R A G++ AG PGS G GL P + G
Sbjct: 692 GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAG 737
Score = 32.3 bits (72), Expect = 0.18
Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P + G P P + D G + P R G G APG++
Sbjct: 722 GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDK 781
Query: 63 GARSPENAGRRSGSETA-GKHERPGSGG 89
G P +G+ A G PG G
Sbjct: 782 GESGPSGPAGPTGARGAPGDRGEPGPPG 809
Score = 32.0 bits (71), Expect = 0.23
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG G P G V PP P+ AGP P P + G G PGE
Sbjct: 868 AGPPGATGFPGAAGRVGPPGPS----GNAGP--PGPPGPAGKEGGKGPRGETGPAGRPGE 921
Query: 62 QGARSPENAGRRSGSETA-GKHERPGSGG 89
G P GS A G PG+ G
Sbjct: 922 VGPPGPPGPAGEKGSPGADGPAGAPGTPG 950
Score = 31.6 bits (70), Expect = 0.30
Identities = 29/101 (28%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRA-----GP-GVENGPSPGLERQTHGAHGGRRQ 55
+G +G G P +G P K D GP GV+ P P E GA G
Sbjct: 418 SGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGP 477
Query: 56 VAAPGEQGARS-------PENAGRRSGSETAGKHERPGSGG 89
PG G R P G AG+ PG G
Sbjct: 478 TGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAG 518
Score = 31.6 bits (70), Expect = 0.30
Identities = 25/90 (27%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG KG P G PP P + PG + G G +V PG
Sbjct: 832 AGAKGDAGPPGPAGPAGPPGPIG---NVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888
Query: 62 QGARSPENAGRRSGSETAGKHERPGSGGGG 91
G P +G E GK R +G G
Sbjct: 889 SGNAGPPGPPGPAGKE-GGKGPRGETGPAG 917
Score = 30.8 bits (68), Expect = 0.52
Identities = 27/89 (30%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG KG+ P + G P L +R PG P P R GA G PG
Sbjct: 283 AGPKGEPGSPGENGAPGQMGPRGLPGERGRPG---APGPAGARGNDGATGA---AGPPGP 336
Query: 62 QGARSPEN-AGRRSGSETAGKHERPGSGG 89
G P G AG GS G
Sbjct: 337 TGPAGPPGFPGAVGAKGEAGPQGPRGSEG 365
Score = 30.8 bits (68), Expect = 0.52
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G +P G+ PP R PG + P G+ G +PGE
Sbjct: 467 GKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEA 526
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P AG G PG G
Sbjct: 527 G--RPGEAGLPGAKGLTGSPGSPGPDG 551
Score = 30.4 bits (67), Expect = 0.68
Identities = 32/115 (27%), Positives = 35/115 (30%), Gaps = 14/115 (12%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P +G P PA R PG P P G G Q A GE
Sbjct: 770 GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEP 829
Query: 63 G-------ARSPENAGRRSGSETAGKHERPGSGGG-------GLLTFPDAQRELG 103
G A P AG G PG+ G G FP A +G
Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P +G+ L R G P P E G G + PG
Sbjct: 941 GPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPM 1000
Query: 63 G----ARSPENAGRRSGSETAGKHERPGSGG 89
G A P +GR G R GS G
Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDGSPG 1031
Score = 28.5 bits (62), Expect = 2.6
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS--PGLERQTHGAHGGRRQVAAPG 60
G KG+ G P + R +P GP GP+ PG + Q GA G APG
Sbjct: 350 GAKGEAGPQGPRGSEGP-QGVRGEPGPPGPAGAAGPAGNPGADGQP-GAKGAN---GAPG 404
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
GA P G R S G PG G
Sbjct: 405 IAGA--PGFPGARGPSGPQGPGGPPGPKG 431
Score = 28.1 bits (61), Expect = 3.4
Identities = 29/109 (26%), Positives = 33/109 (30%), Gaps = 22/109 (20%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARL--KPDRAGPGVENGPS-------------PGLERQTH 47
G G+ P G PP P K GP E GP+ P E+ +
Sbjct: 878 GAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP 937
Query: 48 GAHGGRRQVAAPGEQGARS-------PENAGRRSGSETAGKHERPGSGG 89
GA G PG QG P G R G PG G
Sbjct: 938 GADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 986
Score = 26.9 bits (58), Expect = 7.5
Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGP----SPGLERQTHGAHGGRRQVA 57
+G G+ P G P PG E P SPG + G G
Sbjct: 988 SGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPG-AKGDRGETGPAGPPG 1046
Query: 58 APGEQGARSPENAGRRSG 75
APG GA P +SG
Sbjct: 1047 APGAPGAPGPVGPAGKSG 1064
Score = 26.6 bits (57), Expect = 9.8
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGP--SPGLERQTHGAHGGRRQVAAP 59
AG G+ P Q G+ PP P P G G P S G + ++ G +
Sbjct: 126 AGPPGRDGIPGQPGLPGPPGPPG-PPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPS 184
Query: 60 GEQGARSPENA-GRRSGSETAGKHERPGSGG 89
G +G P A G + G+ PG+ G
Sbjct: 185 GPRGLPGPPGAPGPQGFQGPPGEPGEPGASG 215
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 39.7 bits (91), Expect = 0.001
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG KG+ +G + PP + R PG P P ER G G PG
Sbjct: 479 AGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGP 538
Query: 62 QGA---RSPENAGRRSGSETAGKHERPGS----GGGGLLTFPDAQRELGRV 105
+GA R P + GS+ G RPG G GL P Q G++
Sbjct: 539 KGAQGERGPVGSSGPKGSQ--GDPGRPGEPGLPGARGLTGNPGVQGPEGKL 587
Score = 34.7 bits (78), Expect = 0.036
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 5/109 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
+G G P G P ++ PGV + G HG + + PGE
Sbjct: 440 SGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGE 499
Query: 62 QGARSPE-NAGRRSGSETAGKHERPGS----GGGGLLTFPDAQRELGRV 105
+G R P + G G+ PG+ G GL AQ E G V
Sbjct: 500 EGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPV 548
Score = 33.9 bits (76), Expect = 0.061
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGL----ERQTHGAHGGRRQVA 57
AG G+ +P G+V PP +R P G ENGP+ + + G G + +
Sbjct: 809 AGPTGEKGEPGPRGLVGPP-GSRGNPGSRG---ENGPTGAVGFAGPQGPDGQPGVKGEPG 864
Query: 58 APGEQG-ARSPENAGRRSGSETAGKHERPGSGGG-------GLLTFPDAQRELG 103
PG++G A SP G G + PG GG G FP + +G
Sbjct: 865 EPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVG 918
Score = 32.7 bits (73), Expect = 0.14
Identities = 33/98 (33%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS--PGLE--RQTHGA------HGG 52
G KG+ +P Q+G P P L AG +GP+ PGL+ R T G G
Sbjct: 858 GVKGEPGEPGQKGDAGSPGPQGL----AGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGS 913
Query: 53 RRQVAAPGEQGARSPENAGRRSGSE-TAGKHERPGSGG 89
+V PG GA P G E G PGS G
Sbjct: 914 AGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHG 951
Score = 31.2 bits (69), Expect = 0.40
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 4 GKGQGWDPAQEGVVSPPRPARLKPDRAGP----------GVENGPSPGLERQTHGAHGGR 53
G+G+ + G+V R +P AGP G + P P + G G
Sbjct: 108 GRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVP 167
Query: 54 RQVAAPGEQGARS---PENAGRRSGSETAGKHERPGSG 88
Q APG G S P+ R ++ AG E+ G G
Sbjct: 168 GQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLG 205
Score = 31.2 bits (69), Expect = 0.40
Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS--PGLERQ--THGAHGGRRQVAA 58
G G P G V PP PA P AGP E G PGL +HG G R
Sbjct: 903 GPPGATGFPGSAGRVGPPGPAGA-PGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGP 961
Query: 59 PGEQGARSPENAGRRSGSETAGKHERPG----SGGGGLLTFPDAQRELG 103
PG P + G G PG +G G++ P + E G
Sbjct: 962 PG-----GPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERG 1005
Score = 30.8 bits (68), Expect = 0.52
Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 3 GGKGQGWDPAQEGVVS---PPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAP 59
G G DP G V P P D+ PG + P P G G R V P
Sbjct: 939 GPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMP 998
Query: 60 GEQGARSPENAGRRSGSETAGKHERPGSGG 89
G++G R +G T GK G+ G
Sbjct: 999 GQRGERGMPGLPGPAG--TPGKVGPTGATG 1026
Score = 29.3 bits (64), Expect = 1.5
Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
+ G KG +G P P+ D PG++ P ER G G + G
Sbjct: 727 LPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPG---ERGIAGTPGPKGDRGGIG 783
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
E+GA AG G PG G
Sbjct: 784 EKGAEG--TAGNDGARGLPGPLGPPGPAG 810
Score = 28.9 bits (63), Expect = 2.0
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G+ +P + G P R PG P R G G + +V APG +
Sbjct: 267 GEPGRNGNPGEVGFAGSPGA------RGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSK 320
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P G G PG G
Sbjct: 321 GEAGP--TGPMGAMGPLGPRGMPGERG 345
Score = 28.1 bits (61), Expect = 3.4
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 3 GGK-GQGWDPAQEGVVSP--PRPARLKP-DRAGPGVENGPSPGLERQTHGAHGGRRQVAA 58
GGK G P G V P PR R P +R PG+ P E+ G HG +
Sbjct: 689 GGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPG---EKGMAGGHGPDGPKGS 745
Query: 59 PGEQGARSPEN-------AGRRSGSETAG-KHERPGSGGGG 91
PG G G R + T G K +R G G G
Sbjct: 746 PGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKG 786
Score = 27.7 bits (60), Expect = 4.4
Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 4 GKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQG 63
G G P G V P P L+ + G G P + G G R PG+ G
Sbjct: 205 GSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPG 264
Query: 64 ARSPENAGRRSGSETAGKHERPGSGG 89
GR G PG+ G
Sbjct: 265 --EDGEPGRNGNPGEVGFAGSPGARG 288
Score = 27.3 bits (59), Expect = 5.7
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G + G P P + + PG P T G G + +PG
Sbjct: 381 GNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTS 440
Query: 63 G----ARSPENAGRRSGSETAGKHERPGSGG 89
G A P + G + + G +PG G
Sbjct: 441 GPPGSAGPPGSPGPQGSTGPQGIRGQPGDPG 471
Score = 27.3 bits (59), Expect = 5.7
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 3 GGKGQGWDPAQEGVVSP------PRPARLKPDRAGPGVENGP--SPGLERQTHGAHGGRR 54
G G P ++G V P PA L + PG GP +PG Q G G R
Sbjct: 1050 GPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTP-GPVGAPGDAGQ-RGDPGSRG 1107
Query: 55 QVAAPGEQGARS-PENAGRRSGSETAGKHERPGSGG 89
+ PG G R P G R G G G
Sbjct: 1108 PIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKG 1143
Score = 26.9 bits (58), Expect = 7.5
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 15 GVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQGARSPENAGRRS 74
G + PP PA ++ PG P R G+ G A G G + P+
Sbjct: 801 GPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVK 860
Query: 75 G--SETAGKHERPGSGGGGLLTFP 96
G E K + G GL P
Sbjct: 861 GEPGEPGQKGDAGSPGPQGLAGSP 884
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/87 (36%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G+ P +EG + P LK DR PG + GP PGL G G PG+
Sbjct: 1982 GDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQ-GP-PGLALGERGPPGPSGLAGEPGKP 2039
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P GR G AG RPG G
Sbjct: 2040 GI--PGLPGRAGGVGEAG---RPGERG 2061
Score = 37.0 bits (84), Expect = 0.007
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G GQ P ++G PP K DR PG ER G G R G
Sbjct: 1456 GLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRP 1515
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGGGLLTFP 96
GA+ PE +G + G+ PG G + P
Sbjct: 1516 GAKGPEGPPGPTGRQ--GEKGEPGRPGDPAVVGP 1547
Score = 35.4 bits (80), Expect = 0.021
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 11 PAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQGARS---- 66
P G V PP + LK D+ PGV P P ER G G R + PG++G R
Sbjct: 2442 PGPPGSVGPPGASGLKGDKGDPGV-GLPGPRGER---GEPGIRGEDGRPGQEGPRGLTGP 2497
Query: 67 PENAGRRSGSETAGKHERPGSGG 89
P + G R G G G
Sbjct: 2498 PGSRGERGEKGDVGSAGLKGDKG 2520
Score = 33.9 bits (76), Expect = 0.061
Identities = 33/111 (29%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARL------KPDRAGPGVENGPSPGLERQTHGAHGGRRQ 55
+G G+ DP + G P P K D PG P ER GA G R
Sbjct: 1609 SGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGP 1668
Query: 56 VAAPGEQGARSPENAGRRSGSE-TAGKHERPGSGG--GGLLTFPDAQRELG 103
V G+QG + GS G PG G G L+ RE G
Sbjct: 1669 VGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKG 1719
Score = 33.5 bits (75), Expect = 0.080
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS----PGLERQ--THGAHGGRRQ 55
AG G+ DP ++G P P K D G GV P PG++ G G
Sbjct: 2344 AGRAGEPGDPGEDGQKGAPGPKGFKGD-PGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGV 2402
Query: 56 VAAPGEQGAR----SPENAGRRSGSETAGKHERPGSGG 89
V PG+ G R P +G R + G+ PG G
Sbjct: 2403 VGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLG 2440
Score = 31.2 bits (69), Expect = 0.40
Identities = 25/87 (28%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G DP G P A +K D+ G P PG G G +PG Q
Sbjct: 1377 GPRGPLGDPGPRGPPGLPGTA-MKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQ 1435
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P G G PG G
Sbjct: 1436 GPVGPPGKKGEKGDSEDGAPGLPGQPG 1462
Score = 30.8 bits (68), Expect = 0.52
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG+ + G V PP L PG + P + G G + +PG
Sbjct: 1254 GQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRA 1313
Query: 63 G-ARSPENAGRRSGSETAGKHERPGSGG 89
G +P G + G PG G
Sbjct: 1314 GNPGTPGAPGLKGSPGLPGPRGDPGERG 1341
Score = 30.4 bits (67), Expect = 0.68
Identities = 34/108 (31%), Positives = 41/108 (37%), Gaps = 15/108 (13%)
Query: 3 GGKGQGWDPAQ-EGVVSPPRPARLK-PDRAGPGVENGPSPGLERQT----HGAHGGRRQV 56
G +G+ P EG ++P P P GP GP PG + + GA G Q
Sbjct: 1403 GDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGP-PGKKGEKGDSEDGAPGLPGQP 1461
Query: 57 AAPGEQGARSPENAGRRSG--------SETAGKHERPGSGGGGLLTFP 96
+PGEQG R P A G E K ER G G P
Sbjct: 1462 GSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLP 1509
Score = 30.4 bits (67), Expect = 0.68
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 20/114 (17%)
Query: 3 GGKGQGWDPAQEGVVSP---------PRPAR---LKPDRAGPGVENGPSPGLERQTHGAH 50
G GQ P +EG++ P P P K +R PG+ P P G
Sbjct: 2665 GVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPS------GND 2718
Query: 51 GGRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGR 104
G PG G R PE + G G G G+ P + E GR
Sbjct: 2719 GSAGPPGPPGSVGPRGPEGLQGQKGER--GPPGERVVGAPGVPGAPGERGEQGR 2770
Score = 29.6 bits (65), Expect = 1.2
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQT-----HGAHGGRRQVA 57
G G DP + G PR + +P G V G PGL + G G R +
Sbjct: 1329 GLPGPRGDPGERG----PRGPKGEPGAPGQ-VIGGEGPGLPGRKGDPGPSGPPGPRGPLG 1383
Query: 58 APGEQGARSPENAGRRSGSETAGKHERPGSGGGGL 92
PG +G + G+ PG G GG+
Sbjct: 1384 DPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGI 1418
Score = 29.6 bits (65), Expect = 1.2
Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAP--- 59
G G+ D GV P P GP E GP+ + G G + + AP
Sbjct: 2263 GASGKDGDRGSPGVPGSPG----LPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGL 2318
Query: 60 -----GEQGARSPEN-AGRRSGSETAGKHERPGSGG 89
GE GA+ G R AG+ PG G
Sbjct: 2319 AGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPG 2354
Score = 29.6 bits (65), Expect = 1.2
Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
+G +G P +EG+ P P GP GP PG G G + G+
Sbjct: 2421 SGERGLAGPPGREGIPGPLGPP-------GPPGSVGP-PGAS----GLKGDK------GD 2462
Query: 62 QGARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQR 100
G P G R G+ RPG G LT P R
Sbjct: 2463 PGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSR 2501
Score = 28.5 bits (62), Expect = 2.6
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
MAG +G+ P +G PP P D PG +PGL G G + G
Sbjct: 2160 MAGPEGK---PGLQGPRGPPGPVGGHGDPGPPG-----APGLA----GPAGPQGPSGLKG 2207
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
E G P G + G PG G
Sbjct: 2208 EPGETGPPGRGLTGPTGAVGLPGPPGPSG 2236
Score = 28.5 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
GG G P G+ P P + PG P GL G G PG
Sbjct: 2180 GGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLT----GPTGAVGLPGPPGPS 2235
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P+ + G G+ +PG+ G
Sbjct: 2236 GLVGPQGSPGLPGQ--VGETGKPGAPG 2260
Score = 28.1 bits (61), Expect = 3.4
Identities = 33/97 (34%), Positives = 38/97 (39%), Gaps = 26/97 (26%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAG-PGVENGP----SPGLERQTHGAHGGRRQV 56
A KG+ P +G RP P RAG PG P SPGL G G
Sbjct: 1292 ATAKGERGFPGADG-----RPG--SPGRAGNPGTPGAPGLKGSPGLP----GPRGD---- 1336
Query: 57 AAPGEQGARSPEN----AGRRSGSETAGKHERPGSGG 89
PGE+G R P+ G+ G E G R G G
Sbjct: 1337 --PGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPG 1371
Score = 27.3 bits (59), Expect = 5.7
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 1 MAGGKGQGWDPAQEGVVS------PPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRR 54
+ G G DP G + PP + ++ PG P P R G G +
Sbjct: 1581 LPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKG 1640
Query: 55 QVAAPGEQGARSPENAGRR 73
PG+ G P AG R
Sbjct: 1641 DEGPPGDPGL--PGKAGER 1657
Score = 26.6 bits (57), Expect = 9.8
Identities = 21/87 (24%), Positives = 29/87 (33%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G +P + G+ P A + PG ER G G PG
Sbjct: 2028 GPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPP 2087
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P+ + G +G+ PG G
Sbjct: 2088 GPPGPKVSVDEPGPGLSGEQGPPGLKG 2114
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 1 MAGGKGQGWDPAQEGVVSPPR-----PARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQ 55
+ GG QGWDP P L P+ +G + GP G+ GRRQ
Sbjct: 34 LGGGGHQGWDPGLAATTGPRAHIGGGALALCPESSGVREDGGPGLGVREPIFVGLRGRRQ 93
Query: 56 VAAPGEQGARSP-ENAGRRSGSETAGKHER-PGSGGGGLLTFPDAQRELGR 104
A P E G G + G ER G G G +L + GR
Sbjct: 94 SARNSRGPPEQPNEELGIEHGVQPLGSRERETGQGPGSVLYWRPEVSSCGR 144
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 38.1 bits (87), Expect = 0.003
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG KG+ P G++ PP K DR PG + P E GA G PG
Sbjct: 1318 AGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1377
Query: 62 QGARSPENAGRRSG 75
G P+ A +G
Sbjct: 1378 PGPAGPKGAKGATG 1391
Score = 32.7 bits (73), Expect = 0.14
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKP---DRAGPGVENGPSPGLERQTHGAHGGRRQVAA 58
AG +G DP G PA L+ +R PG G PGL + G G +
Sbjct: 874 AGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG--PGL-KGNEGPSGPPGPAGS 930
Query: 59 PGEQGARS-------PENAGRRSGSETAGKHERPGSGG 89
PGE+GA P G + AG+ PG G
Sbjct: 931 PGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 968
Score = 32.3 bits (72), Expect = 0.18
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLK--PDRAG-PGVENGPSPGLERQTHGAHGGRRQVAAP 59
G GQ +P G P K P G PG P G R GA G R + P
Sbjct: 1154 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP 1213
Query: 60 GEQGARSP--ENA-----GRRSGSETAGKHERPGSGG 89
G+ G+ P EN G+R + + G R G G
Sbjct: 1214 GQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1250
Score = 30.8 bits (68), Expect = 0.52
Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P G + PP + PG++ P R G G Q PG
Sbjct: 1106 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP 1165
Query: 63 GARSPE-NAGRRSGSETAGKHERPGSGGGG 91
G + P + G + G PG G G
Sbjct: 1166 GPKGPTGDDGPKGNPGPVGFPGDPGPPGEG 1195
Score = 30.0 bits (66), Expect = 0.88
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS-PGLERQTHGAHGGRRQVAAPG 60
+GG G P + G+ P P + PG PG Q G G + + PG
Sbjct: 778 SGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQ-RGEVGFQGKTGPPG 836
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
G P+ A +G G+ PG G
Sbjct: 837 PPGVVGPQGAAGETG--PMGERGHPGPPG 863
Score = 30.0 bits (66), Expect = 0.88
Identities = 31/104 (29%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAG---PGVENGPSPGLERQTHGAHGGRRQVAAP 59
G G DP G P K DR PG P P E G G R +P
Sbjct: 1181 GPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP 1240
Query: 60 GEQGARSPENAGRRSGSETA-GKHERPGSGGGGLLTFPDAQREL 102
G +G + + A G+ A GK G G PD R L
Sbjct: 1241 GSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGL 1284
Score = 29.6 bits (65), Expect = 1.2
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGP-GVENGPSPGLERQTHGAHGGRRQVAAPGE 61
G KG+ P G + P P L P AGP G + PG + G G PGE
Sbjct: 1355 GQKGEMGIPGASGPIGPGGPPGL-PGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGE 1413
Query: 62 -----------QGARSPENAGRRSGSETAGKHERPGSGGG 90
+ RS + + E PGS GG
Sbjct: 1414 VIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGG 1453
Score = 29.3 bits (64), Expect = 1.5
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 3 GGKGQGWDPAQEGVVSP--------PRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRR 54
G +G+ P GVV P P R P GP E G PG T G G +
Sbjct: 827 GFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQG-LPG----TAGKEGTKG 881
Query: 55 QVAAPGEQGARSPENAGRRSGSETAGKHERPGSGGG 90
PG G P AG R G+ PG+ GG
Sbjct: 882 DPGPPGAPGKDGP--AGLRG---FPGERGLPGTAGG 912
Score = 28.5 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P ++G+ K D PG P R G G PG +
Sbjct: 857 GHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLK 916
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P +GS G+ GSGG
Sbjct: 917 GNEGPSGPPGPAGS--PGERGAAGSGG 941
Score = 28.1 bits (61), Expect = 3.4
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G +G + P + PG + P P HG G + + PG
Sbjct: 539 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP 598
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGGGLLTFP 96
G+ P + G ++ P SG G L +P
Sbjct: 599 GSDGPPGHPGKEGPPGTKGNQGP-SGPQGPLGYP 631
Score = 27.7 bits (60), Expect = 4.4
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AGG G EG PP PA +R G P G G + PGE
Sbjct: 910 AGGPGL---KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 966
Query: 62 QGARSP 67
+G P
Sbjct: 967 KGPIGP 972
Score = 27.3 bits (59), Expect = 5.7
Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 3 GGKGQGWDPAQEGVVS----------PPRPARLKPDRA--GPGVENGPSPGLERQTHGAH 50
G G DP G++ P P R P + PG R G
Sbjct: 689 GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKS 748
Query: 51 GGRRQVAAPGEQGARSPENAGRRSGSETA----GKHERPGSGG 89
G R + G +G R P A +SG++ G H PG G
Sbjct: 749 GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG 791
Score = 26.9 bits (58), Expect = 7.5
Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 19/98 (19%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS----------PGLERQTHGAHG 51
+G KG+ D G PP P AGP +GP P E+ G G
Sbjct: 1078 SGEKGETGDVGPMGPPGPPGPR----GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESG 1133
Query: 52 GRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
PG +G R G R +G+ PG G
Sbjct: 1134 SPGIQGEPGVKGPR-----GERGEKGESGQPGEPGPPG 1166
Score = 26.6 bits (57), Expect = 9.8
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLK--------PDRAGPGVENGPSPGLERQTHGAHGGRR 54
G KG +G + P P +K G E+G PG + G G R
Sbjct: 614 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG-FPGFKGDI-GVKGDRG 671
Query: 55 QVAAPGEQGARSPENAGRRSG 75
+V PG +G PE R+G
Sbjct: 672 EVGVPGSRGEDGPEGPKGRTG 692
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 38.1 bits (87), Expect = 0.003
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG KG+ P G++ PP K DR PG + P E GA G PG
Sbjct: 1297 AGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1356
Query: 62 QGARSPENAGRRSG 75
G P+ A +G
Sbjct: 1357 PGPAGPKGAKGATG 1370
Score = 32.7 bits (73), Expect = 0.14
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKP---DRAGPGVENGPSPGLERQTHGAHGGRRQVAA 58
AG +G DP G PA L+ +R PG G PGL + G G +
Sbjct: 853 AGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG--PGL-KGNEGPSGPPGPAGS 909
Query: 59 PGEQGARS-------PENAGRRSGSETAGKHERPGSGG 89
PGE+GA P G + AG+ PG G
Sbjct: 910 PGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 947
Score = 32.3 bits (72), Expect = 0.18
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLK--PDRAG-PGVENGPSPGLERQTHGAHGGRRQVAAP 59
G GQ +P G P K P G PG P G R GA G R + P
Sbjct: 1133 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP 1192
Query: 60 GEQGARSP--ENA-----GRRSGSETAGKHERPGSGG 89
G+ G+ P EN G+R + + G R G G
Sbjct: 1193 GQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1229
Score = 30.8 bits (68), Expect = 0.52
Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P G + PP + PG++ P R G G Q PG
Sbjct: 1085 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP 1144
Query: 63 GARSPE-NAGRRSGSETAGKHERPGSGGGG 91
G + P + G + G PG G G
Sbjct: 1145 GPKGPTGDDGPKGNPGPVGFPGDPGPPGEG 1174
Score = 30.0 bits (66), Expect = 0.88
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS-PGLERQTHGAHGGRRQVAAPG 60
+GG G P + G+ P P + PG PG Q G G + + PG
Sbjct: 757 SGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQ-RGEVGFQGKTGPPG 815
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
G P+ A +G G+ PG G
Sbjct: 816 PPGVVGPQGAAGETG--PMGERGHPGPPG 842
Score = 30.0 bits (66), Expect = 0.88
Identities = 31/104 (29%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAG---PGVENGPSPGLERQTHGAHGGRRQVAAP 59
G G DP G P K DR PG P P E G G R +P
Sbjct: 1160 GPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP 1219
Query: 60 GEQGARSPENAGRRSGSETA-GKHERPGSGGGGLLTFPDAQREL 102
G +G + + A G+ A GK G G PD R L
Sbjct: 1220 GSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGL 1263
Score = 29.6 bits (65), Expect = 1.2
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGP-GVENGPSPGLERQTHGAHGGRRQVAAPGE 61
G KG+ P G + P P L P AGP G + PG + G G PGE
Sbjct: 1334 GQKGEMGIPGASGPIGPGGPPGL-PGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGE 1392
Query: 62 -----------QGARSPENAGRRSGSETAGKHERPGSGGG 90
+ RS + + E PGS GG
Sbjct: 1393 VIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGG 1432
Score = 29.3 bits (64), Expect = 1.5
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 3 GGKGQGWDPAQEGVVSP--------PRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRR 54
G +G+ P GVV P P R P GP E G PG T G G +
Sbjct: 806 GFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQG-LPG----TAGKEGTKG 860
Query: 55 QVAAPGEQGARSPENAGRRSGSETAGKHERPGSGGG 90
PG G P AG R G+ PG+ GG
Sbjct: 861 DPGPPGAPGKDGP--AGLRG---FPGERGLPGTAGG 891
Score = 28.5 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P ++G+ K D PG P R G G PG +
Sbjct: 836 GHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLK 895
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P +GS G+ GSGG
Sbjct: 896 GNEGPSGPPGPAGS--PGERGAAGSGG 920
Score = 28.1 bits (61), Expect = 3.4
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G +G + P + PG + P P HG G + + PG
Sbjct: 518 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP 577
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGGGLLTFP 96
G+ P + G ++ P SG G L +P
Sbjct: 578 GSDGPPGHPGKEGPPGTKGNQGP-SGPQGPLGYP 610
Score = 27.7 bits (60), Expect = 4.4
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AGG G EG PP PA +R G P G G + PGE
Sbjct: 889 AGGPGL---KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 945
Query: 62 QGARSP 67
+G P
Sbjct: 946 KGPIGP 951
Score = 27.3 bits (59), Expect = 5.7
Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 3 GGKGQGWDPAQEGVVS----------PPRPARLKPDRA--GPGVENGPSPGLERQTHGAH 50
G G DP G++ P P R P + PG R G
Sbjct: 668 GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKS 727
Query: 51 GGRRQVAAPGEQGARSPENAGRRSGSETA----GKHERPGSGG 89
G R + G +G R P A +SG++ G H PG G
Sbjct: 728 GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG 770
Score = 26.9 bits (58), Expect = 7.5
Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 19/98 (19%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS----------PGLERQTHGAHG 51
+G KG+ D G PP P AGP +GP P E+ G G
Sbjct: 1057 SGEKGETGDVGPMGPPGPPGPR----GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESG 1112
Query: 52 GRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
PG +G R G R +G+ PG G
Sbjct: 1113 SPGIQGEPGVKGPR-----GERGEKGESGQPGEPGPPG 1145
Score = 26.6 bits (57), Expect = 9.8
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLK--------PDRAGPGVENGPSPGLERQTHGAHGGRR 54
G KG +G + P P +K G E+G PG + G G R
Sbjct: 593 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG-FPGFKGDI-GVKGDRG 650
Query: 55 QVAAPGEQGARSPENAGRRSG 75
+V PG +G PE R+G
Sbjct: 651 EVGVPGSRGEDGPEGPKGRTG 671
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 38.1 bits (87), Expect = 0.003
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG KG+ P G++ PP K DR PG + P E GA G PG
Sbjct: 1404 AGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1463
Query: 62 QGARSPENAGRRSG 75
G P+ A +G
Sbjct: 1464 PGPAGPKGAKGATG 1477
Score = 32.7 bits (73), Expect = 0.14
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKP---DRAGPGVENGPSPGLERQTHGAHGGRRQVAA 58
AG +G DP G PA L+ +R PG G PGL + G G +
Sbjct: 960 AGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG--PGL-KGNEGPSGPPGPAGS 1016
Query: 59 PGEQGARS-------PENAGRRSGSETAGKHERPGSGG 89
PGE+GA P G + AG+ PG G
Sbjct: 1017 PGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 1054
Score = 32.3 bits (72), Expect = 0.18
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLK--PDRAG-PGVENGPSPGLERQTHGAHGGRRQVAAP 59
G GQ +P G P K P G PG P G R GA G R + P
Sbjct: 1240 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP 1299
Query: 60 GEQGARSP--ENA-----GRRSGSETAGKHERPGSGG 89
G+ G+ P EN G+R + + G R G G
Sbjct: 1300 GQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1336
Score = 30.8 bits (68), Expect = 0.52
Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P G + PP + PG++ P R G G Q PG
Sbjct: 1192 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP 1251
Query: 63 GARSPE-NAGRRSGSETAGKHERPGSGGGG 91
G + P + G + G PG G G
Sbjct: 1252 GPKGPTGDDGPKGNPGPVGFPGDPGPPGEG 1281
Score = 30.0 bits (66), Expect = 0.88
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS-PGLERQTHGAHGGRRQVAAPG 60
+GG G P + G+ P P + PG PG Q G G + + PG
Sbjct: 864 SGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQ-RGEVGFQGKTGPPG 922
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
G P+ A +G G+ PG G
Sbjct: 923 PPGVVGPQGAAGETG--PMGERGHPGPPG 949
Score = 30.0 bits (66), Expect = 0.88
Identities = 31/104 (29%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAG---PGVENGPSPGLERQTHGAHGGRRQVAAP 59
G G DP G P K DR PG P P E G G R +P
Sbjct: 1267 GPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP 1326
Query: 60 GEQGARSPENAGRRSGSETA-GKHERPGSGGGGLLTFPDAQREL 102
G +G + + A G+ A GK G G PD R L
Sbjct: 1327 GSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGL 1370
Score = 29.6 bits (65), Expect = 1.2
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGP-GVENGPSPGLERQTHGAHGGRRQVAAPGE 61
G KG+ P G + P P L P AGP G + PG + G G PGE
Sbjct: 1441 GQKGEMGIPGASGPIGPGGPPGL-PGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGE 1499
Query: 62 -----------QGARSPENAGRRSGSETAGKHERPGSGGG 90
+ RS + + E PGS GG
Sbjct: 1500 VIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGG 1539
Score = 29.3 bits (64), Expect = 1.5
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 3 GGKGQGWDPAQEGVVSP--------PRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRR 54
G +G+ P GVV P P R P GP E G PG T G G +
Sbjct: 913 GFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQG-LPG----TAGKEGTKG 967
Query: 55 QVAAPGEQGARSPENAGRRSGSETAGKHERPGSGGG 90
PG G P AG R G+ PG+ GG
Sbjct: 968 DPGPPGAPGKDGP--AGLRG---FPGERGLPGTAGG 998
Score = 28.5 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P ++G+ K D PG P R G G PG +
Sbjct: 943 GHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLK 1002
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P +GS G+ GSGG
Sbjct: 1003 GNEGPSGPPGPAGS--PGERGAAGSGG 1027
Score = 28.1 bits (61), Expect = 3.4
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G +G + P + PG + P P HG G + + PG
Sbjct: 625 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP 684
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGGGLLTFP 96
G+ P + G ++ P SG G L +P
Sbjct: 685 GSDGPPGHPGKEGPPGTKGNQGP-SGPQGPLGYP 717
Score = 27.7 bits (60), Expect = 4.4
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AGG G EG PP PA +R G P G G + PGE
Sbjct: 996 AGGPGL---KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 1052
Query: 62 QGARSP 67
+G P
Sbjct: 1053 KGPIGP 1058
Score = 27.3 bits (59), Expect = 5.7
Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 3 GGKGQGWDPAQEGVVS----------PPRPARLKPDRA--GPGVENGPSPGLERQTHGAH 50
G G DP G++ P P R P + PG R G
Sbjct: 775 GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKS 834
Query: 51 GGRRQVAAPGEQGARSPENAGRRSGSETA----GKHERPGSGG 89
G R + G +G R P A +SG++ G H PG G
Sbjct: 835 GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG 877
Score = 26.9 bits (58), Expect = 7.5
Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 19/98 (19%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS----------PGLERQTHGAHG 51
+G KG+ D G PP P AGP +GP P E+ G G
Sbjct: 1164 SGEKGETGDVGPMGPPGPPGPR----GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESG 1219
Query: 52 GRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
PG +G R G R +G+ PG G
Sbjct: 1220 SPGIQGEPGVKGPR-----GERGEKGESGQPGEPGPPG 1252
Score = 26.6 bits (57), Expect = 9.8
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLK--------PDRAGPGVENGPSPGLERQTHGAHGGRR 54
G KG +G + P P +K G E+G PG + G G R
Sbjct: 700 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG-FPGFKGDI-GVKGDRG 757
Query: 55 QVAAPGEQGARSPENAGRRSG 75
+V PG +G PE R+G
Sbjct: 758 EVGVPGSRGEDGPEGPKGRTG 778
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 38.1 bits (87), Expect = 0.003
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLK--PDRAGPGVENGPSPGLERQTHGAHGGRRQVAA-- 58
G KG ++G+ PP P ++ P AGP E GP HG G + A
Sbjct: 211 GPKGDVGASGEQGIPGPPGPQGIRGYPGMAGPKGETGP--------HGYKGMVGAIGATG 262
Query: 59 -PGEQGARSPENAGRRSGSETAGKHERPGSGGGGLLTFP 96
PGE+G R P G E + PG G +T P
Sbjct: 263 PPGEEGPRGPPGRAGEKGDEGS-----PGIRGPQGITGP 296
Score = 34.7 bits (78), Expect = 0.036
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
M G G P +EG PP A K D PG+ + G G + PG
Sbjct: 254 MVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPG 313
Query: 61 EQGARSPENAGRRSGSE----TAGKHERPGSGGG 90
G + + GS AG +PG+ GG
Sbjct: 314 TPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGG 347
Score = 30.4 bits (67), Expect = 0.68
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSP-------GLERQTHGAHGGR 53
+AG GQ G P P L PG E P P G+ Q G G R
Sbjct: 335 LAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQ-KGDQGER 393
Query: 54 RQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
V PG QG + P+ G + G PG G
Sbjct: 394 GPVGQPGPQGRQGPK--GEQGPPGIPGPQGLPGVKG 427
Score = 30.4 bits (67), Expect = 0.68
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 3 GGKGQGWDPA---QEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAP 59
G KG+ +P Q+GV P D PGV+ P P R G G R P
Sbjct: 454 GEKGESGEPGPKGQQGVRGEPGYPGPSGDAGAPGVQGYPGPPGPR---GLAGNRGVPGQP 510
Query: 60 GEQG 63
G QG
Sbjct: 511 GRQG 514
Score = 27.3 bits (59), Expect = 5.7
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLE---RQTHGAHGGRRQVAAP 59
G KG G V P A L ++ G P P + R G G AP
Sbjct: 427 GDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGPSGDAGAP 486
Query: 60 GEQGARSPENAGRRSGSETAGKHERPGSGG 89
G QG P G R + G +PG G
Sbjct: 487 GVQGYPGP--PGPRGLAGNRGVPGQPGRQG 514
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 38.1 bits (87), Expect = 0.003
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHG-----AHGGRRQVA 57
G KG+ G++ PP A K D+ PGV+ P P + G H G VA
Sbjct: 1397 GPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVA 1456
Query: 58 AP-GEQGAR-SPENAGRRSGSETAGKHERPGS 87
P G++G++ SP + G R + AG PG+
Sbjct: 1457 GPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGA 1488
Score = 36.6 bits (83), Expect = 0.009
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 11 PAQEGVVSPPRPARLKPDRAGPG-VENGPSPGLERQTHGAHGGRRQVAAPGEQGARSPEN 69
P +G P P LK D+ PG V SPG ER G GG + PG+ G+ P
Sbjct: 979 PGPKGGPGDPGPTGLKGDKGPPGPVGANGSPG-ERGPLGPAGG---IGLPGQSGSEGPVG 1034
Query: 70 AGRRSGSETAGKHERPGSGG 89
+ GS G+ PG G
Sbjct: 1035 PAGKKGSR--GERGPPGPTG 1052
Score = 33.9 bits (76), Expect = 0.061
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG+ Q G+ P + +R PG P P + GA G + PG Q
Sbjct: 815 GEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQ 874
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P G + GK RPG G
Sbjct: 875 G--PPGFPGPKGPPGHQGKDGRPGHPG 899
Score = 32.7 bits (73), Expect = 0.14
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTH-GAHGGRRQVAAPGE 61
G +G ++G+ P P P AGP E G + H G+ G + PG+
Sbjct: 1043 GERGPPGPTGKDGIPGPLGPLG-PPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQ 1101
Query: 62 QGARSPENAGRRSGSETA-GKHERPGSGG 89
G R P G++ A G+ PG G
Sbjct: 1102 PGIRGPAGHPGPPGADGAQGRRGPPGLFG 1130
Score = 31.6 bits (70), Expect = 0.30
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS-------PGLERQTHGAHGGRRQ 55
G KG P G P P +K G++ PG + G G + +
Sbjct: 692 GEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDV-GLKGDQGK 750
Query: 56 VAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
APG +G PE ++G AG+ PGS G
Sbjct: 751 PGAPGPRGEDGPEGPKGQAGQ--AGEEGPPGSAG 782
Score = 30.8 bits (68), Expect = 0.52
Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS-PGLERQTHGAHGGRRQVAAPGE 61
G +G P G P P L R PG P G++ GA G + V PGE
Sbjct: 581 GERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGID----GAPGAKGNVGPPGE 636
Query: 62 QGARSPE-NAGRRSGSETAGKHERPGS----GGGGLLTFPDAQRELG 103
G + N G + G PG G G+ P + LG
Sbjct: 637 PGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLG 683
Score = 30.4 bits (67), Expect = 0.68
Identities = 27/90 (30%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
+ G G DP G+ P ++ PG GP P GA G + APG
Sbjct: 1263 LPGDLGPPGDPGVSGIDGSPG------EKGDPGDVGGPGPP------GASG---EPGAPG 1307
Query: 61 EQGARSPENAGRRSGSE-TAGKHERPGSGG 89
G R P R G E G PG G
Sbjct: 1308 PPGKRGPSGHMGREGREGEKGAKGEPGPDG 1337
Score = 28.1 bits (61), Expect = 3.4
Identities = 37/142 (26%), Positives = 48/142 (33%), Gaps = 10/142 (7%)
Query: 11 PAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQGARSPENA 70
P G+ P P L G E P R G HG +V G GA +
Sbjct: 481 PGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGA----DG 536
Query: 71 GRRSGSETAGKHERPGSGGGGLLTFPDAQRELGRVQVHHIVPQEPVQHVHDHRLENHVPQ 130
R +T K +R G GL P + + G H+ P + E
Sbjct: 537 ARGLPGDTGPKGDR---GFDGLPGLPGEKGQRG--DFGHVGQPGPPGEDGERGAEGPPGP 591
Query: 131 PWWARQPA-RALLLPPPSPRPS 151
A +P R LL P SP P+
Sbjct: 592 TGQAGEPGPRGLLGPRGSPGPT 613
Score = 28.1 bits (61), Expect = 3.4
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G DP G P P ++ G P ++ G G + V G
Sbjct: 1205 GERGDAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLP 1264
Query: 63 GARSPENAGRRSGSE-TAGKHERPGSGGG 90
G P SG + + G+ PG GG
Sbjct: 1265 GDLGPPGDPGVSGIDGSPGEKGDPGDVGG 1293
Score = 26.6 bits (57), Expect = 9.8
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 21/104 (20%)
Query: 3 GGKGQGWDPAQEGVVSPP-------RPARLKPDRA-------GPGVENGPSPGLERQTHG 48
G GQ +P G++ P RP D A GP E GP PG ++ HG
Sbjct: 590 GPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGP-PG-QQGNHG 647
Query: 49 AHG---GRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
+ G + + PGE+G P N G + G PG G
Sbjct: 648 SQGLPGPQGLIGTPGEKG--PPGNPGIPGLPGSDGPLGHPGHEG 689
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 38.1 bits (87), Expect = 0.003
Identities = 27/90 (30%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 1 MAGGKGQG-WDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAP 59
+ G G G W PA GV P P R +P V P + R G RQ A
Sbjct: 119 LGAGPGAGTWAPAPPGVSKPRCPGRARPGEGQQQVTTARPPAINR-------GARQPRAG 171
Query: 60 GEQGARSPENAGRRSGSETAGKHERPGSGG 89
R P R+G A G GG
Sbjct: 172 AAAAGRGPGAGAWRTGEAAASAGPAVGEGG 201
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 38.1 bits (87), Expect = 0.003
Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
M G KG+ + G + P P PG+ PGL Q G G R PG
Sbjct: 174 MPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQP-GPKGDRGPKGLPG 232
Query: 61 EQGARSPEN------AGRRSGSETAGKHERPGS------GGGGLLTFPDAQRELGR 104
QG R P+ G G H PG G G+ FP Q LG+
Sbjct: 233 PQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGK 288
Score = 26.6 bits (57), Expect = 9.8
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +GQ P G PP P + P P E P GL G V P
Sbjct: 551 GPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGL---------GIDGVKPPHAY 601
Query: 63 GARSPENAG 71
GA+ +N G
Sbjct: 602 GAKKGKNGG 610
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 38.1 bits (87), Expect = 0.003
Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
M G KG+ + G + P P PG+ PGL Q G G R PG
Sbjct: 174 MPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQP-GPKGDRGPKGLPG 232
Query: 61 EQGARSPEN------AGRRSGSETAGKHERPGS------GGGGLLTFPDAQRELGR 104
QG R P+ G G H PG G G+ FP Q LG+
Sbjct: 233 PQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGK 288
Score = 26.6 bits (57), Expect = 9.8
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +GQ P G PP P + P P E P GL G V P
Sbjct: 551 GPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGL---------GIDGVKPPHAY 601
Query: 63 GARSPENAG 71
GA+ +N G
Sbjct: 602 GAKKGKNGG 610
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.7 bits (86), Expect = 0.004
Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGV--ENGP--------SPGLERQTHGAHGG 52
G G ++G V PP PA R PG E GP PG + Q GA G
Sbjct: 792 GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP-GAKGE 850
Query: 53 RRQVAAPGEQGARSPENAGRRSGSE-----TAGKHERPGSGGGGLLTFPDAQRELG 103
+ + G+ GA P+ G + T K R G G FP A +G
Sbjct: 851 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 906
Score = 35.0 bits (79), Expect = 0.027
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
+G G+ +P +G PP D G E P P G G R V PG+
Sbjct: 935 SGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP------QGLAGQRGIVGLPGQ 988
Query: 62 QGARSPENAGRRSGSETAGKHERPGSGG 89
+G R SG GK PG+ G
Sbjct: 989 RGERGFPGLPGPSGE--PGKQGAPGASG 1014
Score = 34.3 bits (77), Expect = 0.047
Identities = 27/88 (30%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG +G P G P PA PG + P R GA G R + PG
Sbjct: 341 AGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG- 399
Query: 62 QGARSPENAGRRSGSETAGKHERPGSGG 89
SP AG T G GS G
Sbjct: 400 ----SPGPAGASGNPGTDGIPGAKGSAG 423
Score = 32.7 bits (73), Expect = 0.14
Identities = 27/89 (30%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG G + Q G PP P GPG P GA G A G
Sbjct: 338 AGAAGARGNDGQPGPAGPPGPV---GPAGGPGFPGAP---------GAKGEAGPTGARGP 385
Query: 62 QGARSPENAGRRSGSE-TAGKHERPGSGG 89
+GA+ P GS AG PG+ G
Sbjct: 386 EGAQGPRGEPGTPGSPGPAGASGNPGTDG 414
Score = 32.0 bits (71), Expect = 0.23
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G +P G P PA + R G G P GA G R PG+
Sbjct: 465 GEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNR---GFPGQD 521
Query: 63 GARSPENA-GRRSGSETAGKHERPGSGG 89
G P+ A G R S AG G G
Sbjct: 522 GLAGPKGAPGERGPSGLAGPKGANGDPG 549
Score = 32.0 bits (71), Expect = 0.23
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G+ G + PP PA ++ G P P GA G R + PG
Sbjct: 777 GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP---PGPAGSAGARGAPGERGETGPPGPA 833
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P A + G++ G+ G G
Sbjct: 834 GFAGPPGADGQPGAK--GEQGEAGQKG 858
Score = 30.8 bits (68), Expect = 0.52
Identities = 30/108 (27%), Positives = 37/108 (34%), Gaps = 17/108 (15%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
+ G KG P +G +K + PG P P G G PG
Sbjct: 283 LPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGP------MGPRG------LPG 330
Query: 61 EQGARSPEN-AGRRSGSETAGKHERPG----SGGGGLLTFPDAQRELG 103
E+G P AG R G PG +GG G P A+ E G
Sbjct: 331 ERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG 378
Score = 30.4 bits (67), Expect = 0.68
Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSP---------GLERQTHGAHGGR 53
G G P ++G PP P + R PGV P P E+ GA G R
Sbjct: 573 GKVGPSGAPGEDGRPGPPGP---QGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLR 629
Query: 54 RQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
GE GA P +G G+ PG G
Sbjct: 630 GLPGKDGETGAAGPPGPAGPAGER--GEQGAPGPSG 663
Score = 29.6 bits (65), Expect = 1.2
Identities = 31/100 (31%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGV-----ENG----PSPGLERQTHGAHGGR 53
G KG+ D G PP P L R G+ E G P P E GA G
Sbjct: 954 GEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS 1013
Query: 54 RQVAAP---GEQGARSPENAGRRSGSETA-GKHERPGSGG 89
P G G P R GS A G R G+ G
Sbjct: 1014 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAG 1053
Score = 29.3 bits (64), Expect = 1.5
Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 2 AGGKGQGWDPAQ---EGVVSPPRPARL--KP-DRAGPGVENGPS----------PGLERQ 45
AG +G+ P +G+ PP P KP D+ PG P PG ER
Sbjct: 650 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-ERG 708
Query: 46 THGAHGGRRQVAAPGEQGARSPENAGRRSGSETA----GKHERPGSGGGGLLTFPDAQR 100
+ GA G + PG G P+ A +G A G PG G + P R
Sbjct: 709 SPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDR 767
Score = 28.5 bits (62), Expect = 2.6
Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 25/119 (21%)
Query: 3 GGKGQGWDPAQEGVVSP--------PRPARLKP-DRAGPGVENGPSPGLERQTHGAHGGR 53
G G+G P +GV PR R P +R PG + P T G G +
Sbjct: 672 GPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPK 731
Query: 54 RQVAAPGEQGARSPEN----AGRRSGSETAG-KHER-----------PGSGGGGLLTFP 96
G GA+ P G R + AG K +R PG GG LT P
Sbjct: 732 GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 790
Score = 27.7 bits (60), Expect = 4.4
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 3 GGKGQGWDPAQEGVVSP--PRPARLKPDRAGPGVENG-PSPGLERQTHGAHGGRRQVAAP 59
G +G +P + GV P PR P + G E G P ER G G R P
Sbjct: 222 GFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP 281
Query: 60 GEQGARSPENAGRRSGSETAGKHERPGSGG 89
G G + G++ G+ PG G
Sbjct: 282 GLPGVKGHRGYPGLDGAK--GEAGAPGVKG 309
Score = 27.7 bits (60), Expect = 4.4
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G P +G P + + PG P G++G PG
Sbjct: 864 GPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 923
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P+ G R S G+ PG G
Sbjct: 924 GKDGPK--GARGDSGPPGRAGEPGLQG 948
Score = 26.6 bits (57), Expect = 9.8
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 13 QEGVVSPPRP--ARLKPDRAG-------PGVENGPSPGLERQTHGAHGGRRQVAAPGEQG 63
Q GV+ P P A +P +AG PG+ P E G G GEQG
Sbjct: 598 QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG 657
Query: 64 ARSPEN-AGRRSGSETAGKHERPGSGG 89
A P G G+ +PG G
Sbjct: 658 APGPSGFQGLPGPPGPPGEGGKPGDQG 684
Score = 26.6 bits (57), Expect = 9.8
Identities = 28/109 (25%), Positives = 34/109 (31%), Gaps = 14/109 (12%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P G V PP PG P P + GA G GE
Sbjct: 891 GPPGATGFPGAAGRVGPPG------SNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEP 944
Query: 63 G----ARSPENAGRRSGSETAGKHERPG----SGGGGLLTFPDAQRELG 103
G A P G +G PG +G G++ P + E G
Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERG 993
Score = 26.6 bits (57), Expect = 9.8
Identities = 26/74 (35%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 3 GGKGQGWDPAQEGVVSPPR---PARLKPDRAG-PGVENGPSPGLERQTHGAHGGRRQVAA 58
G G D G V PP PA +P R G PG + P G G V A
Sbjct: 1008 GAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGA 1066
Query: 59 PGEQG-ARSPENAG 71
PG G SP AG
Sbjct: 1067 PGAPGPPGSPGPAG 1080
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.7 bits (86), Expect = 0.004
Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGV--ENGP--------SPGLERQTHGAHGG 52
G G ++G V PP PA R PG E GP PG + Q GA G
Sbjct: 723 GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP-GAKGE 781
Query: 53 RRQVAAPGEQGARSPENAGRRSGSE-----TAGKHERPGSGGGGLLTFPDAQRELG 103
+ + G+ GA P+ G + T K R G G FP A +G
Sbjct: 782 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 837
Score = 35.0 bits (79), Expect = 0.027
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
+G G+ +P +G PP D G E P P G G R V PG+
Sbjct: 866 SGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP------QGLAGQRGIVGLPGQ 919
Query: 62 QGARSPENAGRRSGSETAGKHERPGSGG 89
+G R SG GK PG+ G
Sbjct: 920 RGERGFPGLPGPSGE--PGKQGAPGASG 945
Score = 34.3 bits (77), Expect = 0.047
Identities = 27/88 (30%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG +G P G P PA PG + P R GA G R + PG
Sbjct: 272 AGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG- 330
Query: 62 QGARSPENAGRRSGSETAGKHERPGSGG 89
SP AG T G GS G
Sbjct: 331 ----SPGPAGASGNPGTDGIPGAKGSAG 354
Score = 32.7 bits (73), Expect = 0.14
Identities = 27/89 (30%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
AG G + Q G PP P GPG P GA G A G
Sbjct: 269 AGAAGARGNDGQPGPAGPPGPV---GPAGGPGFPGAP---------GAKGEAGPTGARGP 316
Query: 62 QGARSPENAGRRSGSE-TAGKHERPGSGG 89
+GA+ P GS AG PG+ G
Sbjct: 317 EGAQGPRGEPGTPGSPGPAGASGNPGTDG 345
Score = 32.0 bits (71), Expect = 0.23
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G +P G P PA + R G G P GA G R PG+
Sbjct: 396 GEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNR---GFPGQD 452
Query: 63 GARSPENA-GRRSGSETAGKHERPGSGG 89
G P+ A G R S AG G G
Sbjct: 453 GLAGPKGAPGERGPSGLAGPKGANGDPG 480
Score = 32.0 bits (71), Expect = 0.23
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G+ G + PP PA ++ G P P GA G R + PG
Sbjct: 708 GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP---PGPAGSAGARGAPGERGETGPPGPA 764
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P A + G++ G+ G G
Sbjct: 765 GFAGPPGADGQPGAK--GEQGEAGQKG 789
Score = 30.8 bits (68), Expect = 0.52
Identities = 30/108 (27%), Positives = 37/108 (34%), Gaps = 17/108 (15%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
+ G KG P +G +K + PG P P G G PG
Sbjct: 214 LPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGP------MGPRG------LPG 261
Query: 61 EQGARSPEN-AGRRSGSETAGKHERPG----SGGGGLLTFPDAQRELG 103
E+G P AG R G PG +GG G P A+ E G
Sbjct: 262 ERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG 309
Score = 30.4 bits (67), Expect = 0.68
Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSP---------GLERQTHGAHGGR 53
G G P ++G PP P + R PGV P P E+ GA G R
Sbjct: 504 GKVGPSGAPGEDGRPGPPGP---QGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLR 560
Query: 54 RQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
GE GA P +G G+ PG G
Sbjct: 561 GLPGKDGETGAAGPPGPAGPAGER--GEQGAPGPSG 594
Score = 29.6 bits (65), Expect = 1.2
Identities = 31/100 (31%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGV-----ENG----PSPGLERQTHGAHGGR 53
G KG+ D G PP P L R G+ E G P P E GA G
Sbjct: 885 GEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS 944
Query: 54 RQVAAP---GEQGARSPENAGRRSGSETA-GKHERPGSGG 89
P G G P R GS A G R G+ G
Sbjct: 945 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAG 984
Score = 29.3 bits (64), Expect = 1.5
Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 2 AGGKGQGWDPAQ---EGVVSPPRPARL--KP-DRAGPGVENGPS----------PGLERQ 45
AG +G+ P +G+ PP P KP D+ PG P PG ER
Sbjct: 581 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-ERG 639
Query: 46 THGAHGGRRQVAAPGEQGARSPENAGRRSGSETA----GKHERPGSGGGGLLTFPDAQR 100
+ GA G + PG G P+ A +G A G PG G + P R
Sbjct: 640 SPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDR 698
Score = 28.5 bits (62), Expect = 2.6
Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 25/119 (21%)
Query: 3 GGKGQGWDPAQEGVVSP--------PRPARLKP-DRAGPGVENGPSPGLERQTHGAHGGR 53
G G+G P +GV PR R P +R PG + P T G G +
Sbjct: 603 GPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPK 662
Query: 54 RQVAAPGEQGARSPEN----AGRRSGSETAG-KHER-----------PGSGGGGLLTFP 96
G GA+ P G R + AG K +R PG GG LT P
Sbjct: 663 GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 721
Score = 27.7 bits (60), Expect = 4.4
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 3 GGKGQGWDPAQEGVVSP--PRPARLKPDRAGPGVENG-PSPGLERQTHGAHGGRRQVAAP 59
G +G +P + GV P PR P + G E G P ER G G R P
Sbjct: 153 GFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP 212
Query: 60 GEQGARSPENAGRRSGSETAGKHERPGSGG 89
G G + G++ G+ PG G
Sbjct: 213 GLPGVKGHRGYPGLDGAK--GEAGAPGVKG 240
Score = 27.7 bits (60), Expect = 4.4
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G P +G P + + PG P G++G PG
Sbjct: 795 GPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 854
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P+ G R S G+ PG G
Sbjct: 855 GKDGPK--GARGDSGPPGRAGEPGLQG 879
Score = 26.6 bits (57), Expect = 9.8
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 13 QEGVVSPPRP--ARLKPDRAG-------PGVENGPSPGLERQTHGAHGGRRQVAAPGEQG 63
Q GV+ P P A +P +AG PG+ P E G G GEQG
Sbjct: 529 QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG 588
Query: 64 ARSPEN-AGRRSGSETAGKHERPGSGG 89
A P G G+ +PG G
Sbjct: 589 APGPSGFQGLPGPPGPPGEGGKPGDQG 615
Score = 26.6 bits (57), Expect = 9.8
Identities = 28/109 (25%), Positives = 34/109 (31%), Gaps = 14/109 (12%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P G V PP PG P P + GA G GE
Sbjct: 822 GPPGATGFPGAAGRVGPPG------SNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEP 875
Query: 63 G----ARSPENAGRRSGSETAGKHERPG----SGGGGLLTFPDAQRELG 103
G A P G +G PG +G G++ P + E G
Sbjct: 876 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERG 924
Score = 26.6 bits (57), Expect = 9.8
Identities = 26/74 (35%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 3 GGKGQGWDPAQEGVVSPPR---PARLKPDRAG-PGVENGPSPGLERQTHGAHGGRRQVAA 58
G G D G V PP PA +P R G PG + P G G V A
Sbjct: 939 GAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGA 997
Query: 59 PGEQG-ARSPENAG 71
PG G SP AG
Sbjct: 998 PGAPGPPGSPGPAG 1011
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.7 bits (86), Expect = 0.004
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
+G KG+ P G++ PP K DR PG + P E+ G G PG
Sbjct: 1476 SGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGL 1535
Query: 62 QGARSPENAGRRSG-SETAGKHERPGSGG 89
G P+ A SG + G+ PG G
Sbjct: 1536 PGPPGPKGAKGSSGPTGPKGEAGHPGPPG 1564
Score = 33.5 bits (75), Expect = 0.080
Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 3 GGKGQGWDPAQEGVVSPP-RPARLK-------PDRAGPGVENGPSPGLERQTHGAHGGRR 54
G KG+G G + PP +L P R GP G PG +G GGR
Sbjct: 844 GPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIG-FPGFPG-ANGEKGGRG 901
Query: 55 QVAAPGEQGARSPEN-AGRRSGSETAGKHERPGSGGGGLLTFPDAQR 100
PG +G R P G R GK G+ GG P +R
Sbjct: 902 TPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGER 948
Score = 32.3 bits (72), Expect = 0.18
Identities = 29/93 (31%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 6 GQGWDPAQEGVVSPPRPARLK--PDRAGPGVENG-------PSPGLERQTHGAHGGRRQV 56
GQ D G PP P L+ P G E G P P R GA G
Sbjct: 1210 GQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQ 1269
Query: 57 AAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
PG G +P G + AG+ PG GG
Sbjct: 1270 GPPG--GIGNPGAVGEKGEPGEAGEPGLPGEGG 1300
Score = 31.6 bits (70), Expect = 0.30
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
GG+G P G P P + +R G+ P P G GG PGE+
Sbjct: 898 GGRGTPGKPGPRGQRGPTGP---RGERGPRGITGKPGP------KGNSGGDGPAGPPGER 948
Query: 63 GARSPEN----AGRRSGSETAGKHERPGSGG 89
G P+ G + GK PG G
Sbjct: 949 GPNGPQGPTGFPGPKGPPGPPGKDGLPGHPG 979
Score = 30.0 bits (66), Expect = 0.88
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Query: 3 GGKGQGWDPAQEG---VVSPPRPARLKPDRAGPGVENGPSPGLERQT--HGAHGGRRQVA 57
G KG+ D +G V PP PA KP R G +G + G+ QT G G
Sbjct: 580 GLKGEPGDVGPQGPRGVQGPPGPAG-KPGRRGRAGSDG-ARGMPGQTGPKGDRGFDGLAG 637
Query: 58 APGEQGARS----------PENAGRRSGSETAGKHERPGSGG 89
PGE+G R P + G R G PG G
Sbjct: 638 LPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPG 679
Score = 29.3 bits (64), Expect = 1.5
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGV-----ENGPS--PGLERQTHGAHGGRRQ 55
G KG P +G + P P +K G+ E G PG + G G R +
Sbjct: 772 GEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDM-GIKGDRGE 830
Query: 56 VAAPGEQGARSPEN-AGRRSGSETAGKHERPGSGG----GGLLTFPDAQRELGRV 105
+ PG +G PE GR + G PG G GL +P Q G +
Sbjct: 831 IGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSI 885
Score = 28.9 bits (63), Expect = 2.0
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVE--NGPSPGLERQ----THGAHGGRR 54
+ G G+ + G + PP P + PG + GP G+ G G
Sbjct: 1232 LPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAG 1291
Query: 55 QVAAPGEQGARSPE-NAGRRSGSETAGKHERPGSGG 89
+ PGE G P+ G + S +G PG G
Sbjct: 1292 EPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKG 1327
Score = 28.9 bits (63), Expect = 2.0
Identities = 29/109 (26%), Positives = 34/109 (31%), Gaps = 8/109 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P + G P K D PG P P E G G R G +
Sbjct: 1342 GFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPE 1401
Query: 63 GARSPENAGRRSGSE-------TAGKHERPGS-GGGGLLTFPDAQRELG 103
G + + A +G E G PG G GL P E G
Sbjct: 1402 GRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQG 1450
Score = 28.5 bits (62), Expect = 2.6
Identities = 30/95 (31%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G+ P GVV P GP E GP G G PGEQ
Sbjct: 985 GFQGKTGPPGPPGVVGP----------QGPTGETGPM--------GERGHPGPPGPPGEQ 1026
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG-GGLLTFP 96
G P AG+ G PG G GL FP
Sbjct: 1027 GL--PGLAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1059
Score = 28.1 bits (61), Expect = 3.4
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
+G KG+ G + PP P PG+ P P + + G G + + PG
Sbjct: 1512 SGPKGEQGITGPSGPIGPPGP---------PGLPGPPGPKGAKGSSGPTGPKGEAGHPGP 1562
Query: 62 QGARSP 67
G P
Sbjct: 1563 PGPPGP 1568
Score = 27.7 bits (60), Expect = 4.4
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS-PGLERQTHGAHGGRRQVAAPG 60
+GG G P + G P P + PG PG Q G G + + PG
Sbjct: 936 SGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQ-RGETGFQGKTGPPG 994
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
G P+ +G G+ PG G
Sbjct: 995 PPGVVGPQGPTGETG--PMGERGHPGPPG 1021
Score = 27.3 bits (59), Expect = 5.7
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 3 GGKGQGWDPAQEGVVSP------PRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQV 56
G +G +P G++ P P P + PG + P E G G
Sbjct: 670 GPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQ 729
Query: 57 AAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
PG QGA P G + G PG+ G
Sbjct: 730 GLPGPQGAIGP--PGEKGPLGKPGLPGMPGADG 760
Score = 26.9 bits (58), Expect = 7.5
Identities = 23/88 (26%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G P +G V P + PG + P P G G + PG
Sbjct: 697 GVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMP 756
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGG 90
GA P GK PG GG
Sbjct: 757 GADGPPG--------HPGKEGPPGEKGG 776
Score = 26.6 bits (57), Expect = 9.8
Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 11 PAQEGVVSPPRPARLKPDRAGPGVENGP--SPGLERQTHGAHGGRRQVAAPGEQGARSPE 68
P G+ P LK + PG GP SPG ER GA G PG QG P
Sbjct: 1059 PGDRGLPGPVGALGLKGNEGPPGPP-GPAGSPG-ERGPAGAAGPIGIPGRPGPQGPPGP- 1115
Query: 69 NAGRRSGSETAGKHERPGSGG 89
AG + G G G
Sbjct: 1116 -AGEKGAPGEKGPQGPAGRDG 1135
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.0 bits (84), Expect = 0.007
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG+ P G++ PP K DR PG + P + G G PG
Sbjct: 1459 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLP 1518
Query: 63 GARSPEN-------AGRRSGSETAGKHERPGSGGGGLLTFP 96
G + P+ AG++ S G PG G + P
Sbjct: 1519 GPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLP 1559
Score = 35.8 bits (81), Expect = 0.016
Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 2 AGGKGQGWDPAQEG---VVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAA 58
+G KG+ DP +G V PP P R PG + G E G G
Sbjct: 561 SGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGL 620
Query: 59 PGEQGARS----------PENAGRRSGSETAGKHERPGSGG 89
PG++G R P + G R G PG G
Sbjct: 621 PGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAG 661
Score = 35.4 bits (80), Expect = 0.021
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
+ G KG+ DP Q G PP P+ + GP + GP PG GA G + + A G
Sbjct: 1343 VGGDKGEDGDPGQPG---PPGPSG-EAGPPGPPGKRGP-PG----AAGAEGRQGEKGAKG 1393
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
E GA P G+ G +PG G
Sbjct: 1394 EAGAEGP--PGKTGPVGPQGPAGKPGPEG 1420
Score = 32.3 bits (72), Expect = 0.18
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG G P G + PP P L + G + P ++ G G PGE
Sbjct: 1495 GAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEV 1554
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQREL 102
P + +++ T G +L + D E+
Sbjct: 1555 IQPLPILSSKKTRRHTEGMQ---ADADDNILDYSDGMEEI 1591
Score = 32.0 bits (71), Expect = 0.23
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQT--HGAHGGRRQVAAPG 60
G G P GV PP P GP E GP PG + G G + + PG
Sbjct: 670 GTPGAPGQPGMAGVDGPPGPK----GNMGPQGEPGP-PGQQGNPGPQGLPGPQGPIGPPG 724
Query: 61 EQGAR-SPENAGRRSGSETAGKHERPG-SGGGGLLTFPDAQRELG 103
E+G + P AG G + G SG G L P Q +G
Sbjct: 725 EKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIG 769
Score = 31.6 bits (70), Expect = 0.30
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G GQ + + GV P P R GP G PG +G G R PG +
Sbjct: 838 GPSGQAGEKGKLGVPGLPG----YPGRQGPKGSTG-FPGFPG-ANGEKGARGVAGKPGPR 891
Query: 63 GARSPEN-AGRRSGSETAGKHERPGSGGGGLLTFPDAQR 100
G R P G R GK G+ GG P +R
Sbjct: 892 GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGER 930
Score = 31.2 bits (69), Expect = 0.40
Identities = 29/95 (30%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 6 GQGWDPAQEGVVSPPRPARLK--PDRAGPGVENG-------PSPGLERQTHGAHGGRRQV 56
GQ D G PP P L+ P G ENG P P R G +G
Sbjct: 1192 GQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQ 1251
Query: 57 AAPGEQGARSPENAGRRSGSETAGKHERPGSGGGG 91
PG G S G + AG PG G G
Sbjct: 1252 GPPGSVG--SVGGVGEKGEPGEAGNPGPPGEAGVG 1284
Score = 30.0 bits (66), Expect = 0.88
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 3 GGKGQGWDPAQEGVVSPP--RPARLKPDRAG-PGVENGPS-PGLERQTH-----GAHGGR 53
G G P +G + PP + + KP AG PG + P PG E Q+ G G +
Sbjct: 706 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 765
Query: 54 RQVAAPGEQGARSPENAGRRSGSE-TAGKHERPGSGG 89
+ PG +G + + GS+ G+ PG G
Sbjct: 766 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKG 802
Score = 30.0 bits (66), Expect = 0.88
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLK--PDRAGP-------GVENG---PSPGLERQTHGA 49
AG G P + G PP PA K P GP GV+ P P + G
Sbjct: 1077 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1136
Query: 50 HGGRRQVAAPGEQGARSPENAGRRSGSE-TAGKHERPGSGGG 90
G + ++ PG++G++ + G G PG GG
Sbjct: 1137 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGG 1178
Score = 29.3 bits (64), Expect = 1.5
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 33/132 (25%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS----------------------P 40
G G+ P +G+ PP + P R G GP+ P
Sbjct: 484 GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP 543
Query: 41 GLERQT--------HGAHGGRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGGG-G 91
G T G+ G + + PG QG R + +G GK RPG+ GG G
Sbjct: 544 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK--PGKRGRPGADGGRG 601
Query: 92 LLTFPDAQRELG 103
+ P A+ + G
Sbjct: 602 MPGEPGAKGDRG 613
Score = 29.3 bits (64), Expect = 1.5
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLK--PDRAG-------PGVENG------PSPGLERQT 46
AG +G DP +G+ PA L+ P G PG++ G P P
Sbjct: 1014 AGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1073
Query: 47 HGAHGGRRQVAAPGEQGARSPEN-AGRRSGSETAGKHERPGSGG 89
G+ G + PG G + P AG + G G G
Sbjct: 1074 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG 1117
Score = 28.5 bits (62), Expect = 2.6
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KGQ +PA VV P P AGP GP PGL+ T PG+
Sbjct: 435 GEKGQKGEPA---VVEPGMLVEGPPGPAGPAGIMGP-PGLQGPT----------GPPGDP 480
Query: 63 GARSP 67
G R P
Sbjct: 481 GDRGP 485
Score = 28.5 bits (62), Expect = 2.6
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G P G P P + R GP + GP G GG PGE+
Sbjct: 880 GARGVAGKPGPRGQRGPTGPRGSRGAR-GPTGKPGPK--------GTSGGDGPPGPPGER 930
Query: 63 GARSPEN----AGRRSGSETAGKHERPGSGG 89
G + P+ G + GK PG G
Sbjct: 931 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPG 961
Score = 28.5 bits (62), Expect = 2.6
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARL--------------KPDRAGPGVENGPSPGLERQTHG 48
GG G+ +P + G PP A + P AGP GP PG G
Sbjct: 1261 GGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP-PG----DDG 1315
Query: 49 AHGGRRQVAAPGEQG-ARSPENAGRRSGSETAGKHERPGSGG 89
G V PG+ G P AG+ G+ PG G
Sbjct: 1316 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPG 1357
Score = 28.1 bits (61), Expect = 3.4
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 3 GGKGQGWDPAQEGVV------SPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQV 56
G KG+ +P Q+G PP P L+ PG+ G R G G +
Sbjct: 1138 GDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDE 1197
Query: 57 AAPGEQGARSP 67
A G G P
Sbjct: 1198 GARGFPGPPGP 1208
Score = 27.3 bits (59), Expect = 5.7
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARL------KPDRAGPGVENGPSPGLERQTHGAHGGRRQV 56
G G P G P PA K + PG P P E G G R
Sbjct: 1318 GNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1377
Query: 57 AAPGEQGARSPENAGRRSGSE 77
A G +G + + A +G+E
Sbjct: 1378 GAAGAEGRQGEKGAKGEAGAE 1398
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.0 bits (84), Expect = 0.007
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG+ P G++ PP K DR PG + P + G G PG
Sbjct: 1408 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLP 1467
Query: 63 GARSPEN-------AGRRSGSETAGKHERPGSGGGGLLTFP 96
G + P+ AG++ S G PG G + P
Sbjct: 1468 GPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLP 1508
Score = 35.8 bits (81), Expect = 0.016
Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 2 AGGKGQGWDPAQEG---VVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAA 58
+G KG+ DP +G V PP P R PG + G E G G
Sbjct: 510 SGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGL 569
Query: 59 PGEQGARS----------PENAGRRSGSETAGKHERPGSGG 89
PG++G R P + G R G PG G
Sbjct: 570 PGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAG 610
Score = 35.4 bits (80), Expect = 0.021
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
+ G KG+ DP Q G PP P+ + GP + GP PG GA G + + A G
Sbjct: 1292 VGGDKGEDGDPGQPG---PPGPSG-EAGPPGPPGKRGP-PG----AAGAEGRQGEKGAKG 1342
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
E GA P G+ G +PG G
Sbjct: 1343 EAGAEGP--PGKTGPVGPQGPAGKPGPEG 1369
Score = 32.3 bits (72), Expect = 0.18
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG G P G + PP P L + G + P ++ G G PGE
Sbjct: 1444 GAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEV 1503
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQREL 102
P + +++ T G +L + D E+
Sbjct: 1504 IQPLPILSSKKTRRHTEGMQ---ADADDNILDYSDGMEEI 1540
Score = 32.0 bits (71), Expect = 0.23
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQT--HGAHGGRRQVAAPG 60
G G P GV PP P GP E GP PG + G G + + PG
Sbjct: 619 GTPGAPGQPGMAGVDGPPGPK----GNMGPQGEPGP-PGQQGNPGPQGLPGPQGPIGPPG 673
Query: 61 EQGAR-SPENAGRRSGSETAGKHERPG-SGGGGLLTFPDAQRELG 103
E+G + P AG G + G SG G L P Q +G
Sbjct: 674 EKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIG 718
Score = 31.6 bits (70), Expect = 0.30
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G GQ + + GV P P R GP G PG +G G R PG +
Sbjct: 787 GPSGQAGEKGKLGVPGLPG----YPGRQGPKGSTG-FPGFPG-ANGEKGARGVAGKPGPR 840
Query: 63 GARSPEN-AGRRSGSETAGKHERPGSGGGGLLTFPDAQR 100
G R P G R GK G+ GG P +R
Sbjct: 841 GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGER 879
Score = 31.2 bits (69), Expect = 0.40
Identities = 29/95 (30%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 6 GQGWDPAQEGVVSPPRPARLK--PDRAGPGVENG-------PSPGLERQTHGAHGGRRQV 56
GQ D G PP P L+ P G ENG P P R G +G
Sbjct: 1141 GQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQ 1200
Query: 57 AAPGEQGARSPENAGRRSGSETAGKHERPGSGGGG 91
PG G S G + AG PG G G
Sbjct: 1201 GPPGSVG--SVGGVGEKGEPGEAGNPGPPGEAGVG 1233
Score = 30.0 bits (66), Expect = 0.88
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 3 GGKGQGWDPAQEGVVSPP--RPARLKPDRAG-PGVENGPS-PGLERQTH-----GAHGGR 53
G G P +G + PP + + KP AG PG + P PG E Q+ G G +
Sbjct: 655 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 714
Query: 54 RQVAAPGEQGARSPENAGRRSGSE-TAGKHERPGSGG 89
+ PG +G + + GS+ G+ PG G
Sbjct: 715 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKG 751
Score = 30.0 bits (66), Expect = 0.88
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLK--PDRAGP-------GVENG---PSPGLERQTHGA 49
AG G P + G PP PA K P GP GV+ P P + G
Sbjct: 1026 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1085
Query: 50 HGGRRQVAAPGEQGARSPENAGRRSGSE-TAGKHERPGSGGG 90
G + ++ PG++G++ + G G PG GG
Sbjct: 1086 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGG 1127
Score = 29.3 bits (64), Expect = 1.5
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 33/132 (25%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS----------------------P 40
G G+ P +G+ PP + P R G GP+ P
Sbjct: 433 GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP 492
Query: 41 GLERQT--------HGAHGGRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGGG-G 91
G T G+ G + + PG QG R + +G GK RPG+ GG G
Sbjct: 493 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK--PGKRGRPGADGGRG 550
Query: 92 LLTFPDAQRELG 103
+ P A+ + G
Sbjct: 551 MPGEPGAKGDRG 562
Score = 29.3 bits (64), Expect = 1.5
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLK--PDRAG-------PGVENG------PSPGLERQT 46
AG +G DP +G+ PA L+ P G PG++ G P P
Sbjct: 963 AGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1022
Query: 47 HGAHGGRRQVAAPGEQGARSPEN-AGRRSGSETAGKHERPGSGG 89
G+ G + PG G + P AG + G G G
Sbjct: 1023 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG 1066
Score = 28.5 bits (62), Expect = 2.6
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KGQ +PA VV P P AGP GP PGL+ T PG+
Sbjct: 384 GEKGQKGEPA---VVEPGMLVEGPPGPAGPAGIMGP-PGLQGPT----------GPPGDP 429
Query: 63 GARSP 67
G R P
Sbjct: 430 GDRGP 434
Score = 28.5 bits (62), Expect = 2.6
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G P G P P + R GP + GP G GG PGE+
Sbjct: 829 GARGVAGKPGPRGQRGPTGPRGSRGAR-GPTGKPGPK--------GTSGGDGPPGPPGER 879
Query: 63 GARSPEN----AGRRSGSETAGKHERPGSGG 89
G + P+ G + GK PG G
Sbjct: 880 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPG 910
Score = 28.5 bits (62), Expect = 2.6
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARL--------------KPDRAGPGVENGPSPGLERQTHG 48
GG G+ +P + G PP A + P AGP GP PG G
Sbjct: 1210 GGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP-PG----DDG 1264
Query: 49 AHGGRRQVAAPGEQG-ARSPENAGRRSGSETAGKHERPGSGG 89
G V PG+ G P AG+ G+ PG G
Sbjct: 1265 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPG 1306
Score = 28.1 bits (61), Expect = 3.4
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 3 GGKGQGWDPAQEGVV------SPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQV 56
G KG+ +P Q+G PP P L+ PG+ G R G G +
Sbjct: 1087 GDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDE 1146
Query: 57 AAPGEQGARSP 67
A G G P
Sbjct: 1147 GARGFPGPPGP 1157
Score = 27.3 bits (59), Expect = 5.7
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARL------KPDRAGPGVENGPSPGLERQTHGAHGGRRQV 56
G G P G P PA K + PG P P E G G R
Sbjct: 1267 GNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1326
Query: 57 AAPGEQGARSPENAGRRSGSE 77
A G +G + + A +G+E
Sbjct: 1327 GAAGAEGRQGEKGAKGEAGAE 1347
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.0 bits (84), Expect = 0.007
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG+ P G++ PP K DR PG + P + G G PG
Sbjct: 1447 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLP 1506
Query: 63 GARSPEN-------AGRRSGSETAGKHERPGSGGGGLLTFP 96
G + P+ AG++ S G PG G + P
Sbjct: 1507 GPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLP 1547
Score = 35.8 bits (81), Expect = 0.016
Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 2 AGGKGQGWDPAQEG---VVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAA 58
+G KG+ DP +G V PP P R PG + G E G G
Sbjct: 549 SGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGL 608
Query: 59 PGEQGARS----------PENAGRRSGSETAGKHERPGSGG 89
PG++G R P + G R G PG G
Sbjct: 609 PGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAG 649
Score = 35.4 bits (80), Expect = 0.021
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
+ G KG+ DP Q G PP P+ + GP + GP PG GA G + + A G
Sbjct: 1331 VGGDKGEDGDPGQPG---PPGPSG-EAGPPGPPGKRGP-PG----AAGAEGRQGEKGAKG 1381
Query: 61 EQGARSPENAGRRSGSETAGKHERPGSGG 89
E GA P G+ G +PG G
Sbjct: 1382 EAGAEGP--PGKTGPVGPQGPAGKPGPEG 1408
Score = 32.3 bits (72), Expect = 0.18
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG G P G + PP P L + G + P ++ G G PGE
Sbjct: 1483 GAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEV 1542
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQREL 102
P + +++ T G +L + D E+
Sbjct: 1543 IQPLPILSSKKTRRHTEGMQ---ADADDNILDYSDGMEEI 1579
Score = 32.0 bits (71), Expect = 0.23
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQT--HGAHGGRRQVAAPG 60
G G P GV PP P GP E GP PG + G G + + PG
Sbjct: 658 GTPGAPGQPGMAGVDGPPGPK----GNMGPQGEPGP-PGQQGNPGPQGLPGPQGPIGPPG 712
Query: 61 EQGAR-SPENAGRRSGSETAGKHERPG-SGGGGLLTFPDAQRELG 103
E+G + P AG G + G SG G L P Q +G
Sbjct: 713 EKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIG 757
Score = 31.6 bits (70), Expect = 0.30
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G GQ + + GV P P R GP G PG +G G R PG +
Sbjct: 826 GPSGQAGEKGKLGVPGLPG----YPGRQGPKGSTG-FPGFPG-ANGEKGARGVAGKPGPR 879
Query: 63 GARSPEN-AGRRSGSETAGKHERPGSGGGGLLTFPDAQR 100
G R P G R GK G+ GG P +R
Sbjct: 880 GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGER 918
Score = 31.2 bits (69), Expect = 0.40
Identities = 29/95 (30%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 6 GQGWDPAQEGVVSPPRPARLK--PDRAGPGVENG-------PSPGLERQTHGAHGGRRQV 56
GQ D G PP P L+ P G ENG P P R G +G
Sbjct: 1180 GQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQ 1239
Query: 57 AAPGEQGARSPENAGRRSGSETAGKHERPGSGGGG 91
PG G S G + AG PG G G
Sbjct: 1240 GPPGSVG--SVGGVGEKGEPGEAGNPGPPGEAGVG 1272
Score = 30.0 bits (66), Expect = 0.88
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 3 GGKGQGWDPAQEGVVSPP--RPARLKPDRAG-PGVENGPS-PGLERQTH-----GAHGGR 53
G G P +G + PP + + KP AG PG + P PG E Q+ G G +
Sbjct: 694 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 753
Query: 54 RQVAAPGEQGARSPENAGRRSGSE-TAGKHERPGSGG 89
+ PG +G + + GS+ G+ PG G
Sbjct: 754 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKG 790
Score = 30.0 bits (66), Expect = 0.88
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLK--PDRAGP-------GVENG---PSPGLERQTHGA 49
AG G P + G PP PA K P GP GV+ P P + G
Sbjct: 1065 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1124
Query: 50 HGGRRQVAAPGEQGARSPENAGRRSGSE-TAGKHERPGSGGG 90
G + ++ PG++G++ + G G PG GG
Sbjct: 1125 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGG 1166
Score = 29.3 bits (64), Expect = 1.5
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 33/132 (25%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS----------------------P 40
G G+ P +G+ PP + P R G GP+ P
Sbjct: 472 GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP 531
Query: 41 GLERQT--------HGAHGGRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGGG-G 91
G T G+ G + + PG QG R + +G GK RPG+ GG G
Sbjct: 532 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK--PGKRGRPGADGGRG 589
Query: 92 LLTFPDAQRELG 103
+ P A+ + G
Sbjct: 590 MPGEPGAKGDRG 601
Score = 29.3 bits (64), Expect = 1.5
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLK--PDRAG-------PGVENG------PSPGLERQT 46
AG +G DP +G+ PA L+ P G PG++ G P P
Sbjct: 1002 AGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1061
Query: 47 HGAHGGRRQVAAPGEQGARSPEN-AGRRSGSETAGKHERPGSGG 89
G+ G + PG G + P AG + G G G
Sbjct: 1062 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG 1105
Score = 28.5 bits (62), Expect = 2.6
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KGQ +PA VV P P AGP GP PGL+ T PG+
Sbjct: 423 GEKGQKGEPA---VVEPGMLVEGPPGPAGPAGIMGP-PGLQGPT----------GPPGDP 468
Query: 63 GARSP 67
G R P
Sbjct: 469 GDRGP 473
Score = 28.5 bits (62), Expect = 2.6
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G P G P P + R GP + GP G GG PGE+
Sbjct: 868 GARGVAGKPGPRGQRGPTGPRGSRGAR-GPTGKPGPK--------GTSGGDGPPGPPGER 918
Query: 63 GARSPEN----AGRRSGSETAGKHERPGSGG 89
G + P+ G + GK PG G
Sbjct: 919 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPG 949
Score = 28.5 bits (62), Expect = 2.6
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARL--------------KPDRAGPGVENGPSPGLERQTHG 48
GG G+ +P + G PP A + P AGP GP PG G
Sbjct: 1249 GGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP-PG----DDG 1303
Query: 49 AHGGRRQVAAPGEQG-ARSPENAGRRSGSETAGKHERPGSGG 89
G V PG+ G P AG+ G+ PG G
Sbjct: 1304 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPG 1345
Score = 28.1 bits (61), Expect = 3.4
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 3 GGKGQGWDPAQEGVV------SPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQV 56
G KG+ +P Q+G PP P L+ PG+ G R G G +
Sbjct: 1126 GDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDE 1185
Query: 57 AAPGEQGARSP 67
A G G P
Sbjct: 1186 GARGFPGPPGP 1196
Score = 27.3 bits (59), Expect = 5.7
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARL------KPDRAGPGVENGPSPGLERQTHGAHGGRRQV 56
G G P G P PA K + PG P P E G G R
Sbjct: 1306 GNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1365
Query: 57 AAPGEQGARSPENAGRRSGSE 77
A G +G + + A +G+E
Sbjct: 1366 GAAGAEGRQGEKGAKGEAGAE 1386
>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
Length = 462
Score = 36.6 bits (83), Expect = 0.009
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 4 GKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQG 63
G G + G +PP PA ++PD + E G R+ GGRR+ A G G
Sbjct: 263 GLGAAAGAGENGHCAPP-PADVEPDESSAAAERRRRRGALRR-----GGRRRAGAEGGAG 316
Query: 64 ARSPENAG---RRSGSETAGKHERPGSGG 89
+ AG SG+ TA + PG GG
Sbjct: 317 GADGQGAGPGAAESGALTASR--SPGPGG 343
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 36.6 bits (83), Expect = 0.009
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG+ +P +G P + D PG E GP PG E+ G G APGE+
Sbjct: 368 GLKGEKGEPGADGEAGRPGSSGPSGDEGQPG-EPGP-PG-EKGEAGDEGNPGPDGAPGER 424
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G P G R T G PG G
Sbjct: 425 G--GPGERGPRGTPGTRGPRGDPGEAG 449
Score = 33.9 bits (76), Expect = 0.061
Identities = 31/104 (29%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 3 GGKGQGWDPAQEGVVSPP--RPARLKPDRAGPGVENG-------PSPGLERQTHGAHGGR 53
G G+ P + G P R R P AGP + G P E G G R
Sbjct: 419 GAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYR 478
Query: 54 RQVAAPGEQGAR-SPENAGRRSGSETAGKHERPGSGGGGLLTFP 96
PG +GAR +P AG G+ G G G FP
Sbjct: 479 GDEGPPGSEGARGAPGPAGPPGDPGLMGERGEDGPAGNGTEGFP 522
Score = 32.3 bits (72), Expect = 0.18
Identities = 27/88 (30%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G D Q G PP D PG + P ER G G R PG +
Sbjct: 386 GSSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPG---ERGGPGERGPR---GTPGTR 439
Query: 63 GAR-SPENAGRRSGSETAGKHERPGSGG 89
G R P AG + G PG G
Sbjct: 440 GPRGDPGEAGPQGDQGREGPVGVPGDPG 467
Score = 27.3 bits (59), Expect = 5.7
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KG+ +GV L + PG + P + GA G + + PG
Sbjct: 320 GEKGKRGIDGVDGVKGEMGYPGLPGCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGAD 379
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G AGR S +G +PG G
Sbjct: 380 G-----EAGRPGSSGPSGDEGQPGEPG 401
Score = 26.6 bits (57), Expect = 9.8
Identities = 28/93 (30%), Positives = 33/93 (35%), Gaps = 15/93 (16%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGP------GVENGPSPGLERQTHGAHGGRRQV 56
G G D +EG V P P AGP + GP PG E GA G
Sbjct: 446 GEAGPQGDQGREGPVGVPGD----PGEAGPIGPKGYRGDEGP-PGSE----GARGAPGPA 496
Query: 57 AAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
PG+ G +G+ T G PG G
Sbjct: 497 GPPGDPGLMGERGEDGPAGNGTEGFPGFPGYPG 529
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 36.2 bits (82), Expect = 0.012
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G+G A+ +P R P R G PG R GA GG +Q G +
Sbjct: 459 GARGRGGRGARGA--APSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVR 516
Query: 63 GARSPENAGRRSGSETAGKHERPGS 87
GAR G G A + +P S
Sbjct: 517 GARG-GRGGNVGGKRKADGYNQPDS 540
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 36.2 bits (82), Expect = 0.012
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G+G A+ +P R P R G PG R GA GG +Q G +
Sbjct: 494 GARGRGGRGARGA--APSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVR 551
Query: 63 GARSPENAGRRSGSETAGKHERPGS 87
GAR G G A + +P S
Sbjct: 552 GARG-GRGGNVGGKRKADGYNQPDS 575
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 36.2 bits (82), Expect = 0.012
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 2 AGGKGQGW---DPAQEGVVSPPRPARLKPDRAGPGVENGPS-----PGL-----ERQTHG 48
AG KG+ +P G PP P+ + + GP E G + PGL R G
Sbjct: 351 AGSKGESGNKGEPGSAGPQGPPGPSG-EEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPG 409
Query: 49 AHGGRRQVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
A G + PG +GA P AG R + AG+ PG G
Sbjct: 410 ADGRAGVMGPPGSRGASGP--AGVRGPNGDAGRPGEPGLMG 448
Score = 33.9 bits (76), Expect = 0.061
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLK--------PDRAGPGVENGPSPGLERQTHGAHGGRR 54
G G G+V P PA K P AGP + P P E G +G
Sbjct: 331 GPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGP--QGPPGPSGEEGKRGPNGEAG 388
Query: 55 QVAAPGEQGAR-SPENAGRRSGSETAGKHERPGSGG 89
PG G R SP + G AG PGS G
Sbjct: 389 SAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRG 424
Score = 33.5 bits (75), Expect = 0.080
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 4 GKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQG 63
GKG G P G++ P P PG P P + G G + G G
Sbjct: 83 GKGVGLGPGPMGLMGPRGP---------PGAAGAPGP---QGFQGPAGEPGEPGQTGPAG 130
Query: 64 ARSPENAGRRSGSE-TAGKHERPGSGG 89
AR P ++G + GK RPG G
Sbjct: 131 ARGPAGPPGKAGEDGHPGKPGRPGERG 157
Score = 33.5 bits (75), Expect = 0.080
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
+AG +G G PP P ++ G G + P P + G G +V PG
Sbjct: 515 LAGARGAPGPDGNNGAQGPPGPQGVQ---GGKGEQGPPGPPGFQGLPGPSGPAGEVGKPG 571
Query: 61 EQGARS----PENAGRRSGSETAGKHERPGSGGGGLLTFPDAQR 100
E+G P AG R G+ PG G T P R
Sbjct: 572 ERGLHGEFGLPGPAGPR------GERGPPGESGAAGPTGPIGSR 609
Score = 33.5 bits (75), Expect = 0.080
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 29/130 (22%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDR-----AGPGVENGP--SPGLERQT--------H 47
G G+ G V P PA DR AGP GP SPG +
Sbjct: 667 GNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFA 726
Query: 48 GAHGGRRQVAAPGEQGARSPEN-------AGRRSGSETAGKHERPGSGGG-------GLL 93
G G Q A GE+GA+ P+ G + AG + PG G G+
Sbjct: 727 GPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMT 786
Query: 94 TFPDAQRELG 103
FP A G
Sbjct: 787 GFPGAAGRTG 796
Score = 31.2 bits (69), Expect = 0.40
Identities = 33/118 (27%), Positives = 41/118 (34%), Gaps = 29/118 (24%)
Query: 15 GVVSPPRPARLKPD--------------RAGP-------GVENGPSPGLERQTHGAHGGR 53
G PP PA + D R GP G P P + G G +
Sbjct: 766 GPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQ 825
Query: 54 RQVAAPGEQGARSPEN-AGRRSGSETAGKHERPGS-------GGGGLLTFPDAQRELG 103
V GE GA P AG + S AG PG+ G G+L P ++ E G
Sbjct: 826 GPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERG 883
Score = 30.4 bits (67), Expect = 0.68
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 25 LKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQG-ARSPENAGRRSGSETAGKHE 83
LK PGV+ P E T G G R PGE+G +P AG R + G
Sbjct: 188 LKGQPGAPGVKGEPGAPGENGTPGQTGAR---GLPGERGRVGAPGPAGARGSDGSVGPVG 244
Query: 84 RPGS-GGGGLLTFPDAQRELGRV 105
G G G FP A G +
Sbjct: 245 PAGPIGSAGPPGFPGAPGPKGEI 267
Score = 26.9 bits (58), Expect = 7.5
Identities = 28/101 (27%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLE------RQTHGAHGGRRQV 56
G G +G V P PA PG P P E G G R +V
Sbjct: 226 GAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEV 285
Query: 57 AAPGEQG-ARSPENAGRRSGSETAGKHERPGSGGGGLLTFP 96
PG G P N G + G PG G L P
Sbjct: 286 GLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGP 326
Score = 26.6 bits (57), Expect = 9.8
Identities = 24/92 (26%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 2 AGGKGQGWD---PAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAA 58
AG +G+ + P +G P K G P P G G +
Sbjct: 483 AGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGG 542
Query: 59 PGEQGARSPEN-AGRRSGSETAGKHERPGSGG 89
GEQG P G S AG+ +PG G
Sbjct: 543 KGEQGPPGPPGFQGLPGPSGPAGEVGKPGERG 574
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 36.2 bits (82), Expect = 0.012
Identities = 28/94 (29%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G G +P G V P P+ PG+ P ER GA G + +PG
Sbjct: 392 GAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAG---EEGSPGPV 448
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGGGLLTFP 96
G R A G GK PG G L P
Sbjct: 449 GPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGP 482
Score = 32.7 bits (73), Expect = 0.14
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 23/101 (22%)
Query: 4 GKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQG 63
GKG+ +P G P P K DR PG+ PG +PG +G
Sbjct: 464 GKGKDGEPGLRGSPGLPGPLGTKGDRGAPGI-----PG----------------SPGSRG 502
Query: 64 ARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELGR 104
AG S G PGS GL FP Q GR
Sbjct: 503 DPGIGVAGPPGPSGPPGDKGSPGS--RGLPGFPGPQGPAGR 541
Score = 30.8 bits (68), Expect = 0.52
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G +G+ + +G PP + PG P G G V APG +
Sbjct: 365 GLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLR 424
Query: 63 GARSPENAGRRSGSETAGKHERPGSGG 89
G +P G R AG+ PG G
Sbjct: 425 G--TPGKDGERGEKGAAGEEGSPGPVG 449
Score = 30.8 bits (68), Expect = 0.52
Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGP----SPGL--ERQTHGAHGGRRQV 56
G KG+ P G + P P ++ PG E P PG ER G G +
Sbjct: 795 GSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPP 854
Query: 57 AAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
G+ G P G + + G PG G
Sbjct: 855 GGKGQPG--DPGIPGHKGHTGLMGPQGLPGENG 885
Score = 28.9 bits (63), Expect = 2.0
Identities = 27/93 (29%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 3 GGKGQGWDPAQEGVVSP-----PRPARLKPDRAG-PGVENGPSPGLERQTHGAHGGRRQV 56
G GQ P ++G P P+ R P + G PG P P G+ G
Sbjct: 744 GLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSP 803
Query: 57 AAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
PG G R P G GK PG G
Sbjct: 804 GLPGFLGPRGPPGEPGEKG--VPGKEGVPGKPG 834
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 36.2 bits (82), Expect = 0.012
Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 8/101 (7%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGEQ 62
G KGQ P G PP P + PG+ P P G G Q PGE+
Sbjct: 1113 GAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGP------VGGGGHPGQPGPPGEK 1166
Query: 63 GARSPENAGRRSGSETAGKHERPGSGGGGLLTFPDAQRELG 103
G P G + G+ +PG G G P + G
Sbjct: 1167 G--KPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKG 1205
Score = 33.9 bits (76), Expect = 0.061
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 3 GGKGQGWDPAQEGVVSPPRP-----ARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVA 57
G GQ +P Q G +P P + K D PG+ P + G HG
Sbjct: 1176 GPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQG 1235
Query: 58 APGEQGARSPENAGRRSGSETAGKHERPGSGG 89
PG G+ P G + G RPG G
Sbjct: 1236 PPGPPGSPGPALEGPKGNPGPQGPPGRPGPTG 1267
Score = 29.6 bits (65), Expect = 1.2
Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLK--PDRAG-PGVENGPS----PGLERQTHGAHGGRR 54
AG G + G++ PP P P R+G PG++ PGL T G G +
Sbjct: 886 AGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPT-GEKGSKG 944
Query: 55 QVAAPGEQGARSPENAGRRSGSETAGKHERPGSGG 89
+ PG G P G + G PG G
Sbjct: 945 EPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSG 979
Score = 28.5 bits (62), Expect = 2.6
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPS-----PGL--ERQTHGAHGGRRQ 55
G G+ + Q+G PP P L R G G+ G PGL E+ G G +
Sbjct: 322 GEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGP 381
Query: 56 VAAPGEQGA 64
PG GA
Sbjct: 382 PGLPGPPGA 390
Score = 27.7 bits (60), Expect = 4.4
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPG 60
+ G KG Q G + PP + + PG P P + HG G + PG
Sbjct: 794 LPGPKGDVGPNGQPGPMGPPGLPGIGV-QGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPG 852
Query: 61 EQGARSPENAGRRSGSETAGKHERPGS----GGGGLLTFPDAQRELG 103
P G G PGS G G FP + E+G
Sbjct: 853 LDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMG 899
Score = 27.3 bits (59), Expect = 5.7
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 2 AGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVENGPSPGLERQTHGAHGGRRQVAAPGE 61
+G G D +G P P K + PG+ P P ++ G+ G + + PG
Sbjct: 916 SGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP-MDPNLLGSKGEKGEPGLPGI 974
Query: 62 QGARSPE 68
G P+
Sbjct: 975 PGVSGPK 981
Score = 26.9 bits (58), Expect = 7.5
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 3 GGKGQGWDPAQEGVVSPPRPARLKPDRAGP---GVENGPSPGLERQTHGAHGGRRQVAAP 59
G KG P Q G++ PP D P GVE P P G+ G Q
Sbjct: 1006 GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDK 1065
Query: 60 GEQGARSPENAGRRSGSETAGKHERPGSGG 89
G+ G S G G PG+ G
Sbjct: 1066 GDPGISSIGLPGLPGPKGEPGLPGYPGNPG 1095
Score = 26.6 bits (57), Expect = 9.8
Identities = 27/98 (27%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 1 MAGGKGQGWDPAQEGVVSPPRPARLKPDRAGPGVE------NGPSPGLE--RQTHGAHGG 52
++G KG G P G P P PGV+ P P LE + G G
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGP 1259
Query: 53 RRQVAAPGEQGARSPEN-AGRRSGSETAGKHERPGSGG 89
+ G QG PE G G+ PG G
Sbjct: 1260 PGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPG 1297
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,546,070
Number of Sequences: 37866
Number of extensions: 615405
Number of successful extensions: 4661
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 457
Number of HSP's that attempted gapping in prelim test: 3115
Number of HSP's gapped (non-prelim): 1763
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.