Guide to the Human Genome
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Name: LOC100292916 Sequence: fasta or formatted (160aa) NCBI GI: 239755074
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         14           2
 C cysteine            0.6          1           1
 D aspartate           2.5          4           1
 E glutamate           6.9         11           1
 F phenylalanine       0.6          1           1
 G glycine            14.4         23           4
 H histidine           5.6          9           2
 I isoleucine          0.6          1           1
 K lysine              1.9          3           1
 L leucine             6.9         11           3
 M methionine          0.6          1           1
 N asparagine          2.5          4           1
 P proline            14.4         23           3
 Q glutamine           6.9         11           1
 R arginine           10.6         17           2
 S serine              5.6          9           1
 T threonine           2.5          4           1
 V valine              6.2         10           2
 W tryptophan          1.9          3           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290781          1.000   PREDICTED: hypothetical protein XP_002347101 
LOC100286938          1.000   PREDICTED: hypothetical protein XP_002342984 
COL3A1                0.069   collagen type III alpha 1 preproprotein 
PPP1R10               0.050   protein phosphatase 1, regulatory subunit 10 
COL1A1                0.047   alpha 1 type I collagen preproprotein 
COL5A2                0.047   alpha 2 type V collagen preproprotein 
COL7A1                0.047   alpha 1 type VII collagen precursor 
CELSR3                0.047   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
COL11A2               0.041   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.041   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.041   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL9A2                0.041   alpha 2 type IX collagen 
COL5A3                0.041   collagen, type V, alpha 3 preproprotein 
ALPK3                 0.041   alpha-kinase 3 
COL8A1                0.041   alpha 1 type VIII collagen precursor 
COL8A1                0.041   alpha 1 type VIII collagen precursor 
COL2A1                0.041   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.041   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A1                0.041   alpha 1 type V collagen preproprotein 
COL11A1               0.038   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.038   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.038   alpha 1 type XI collagen isoform A preproprotein [Ho...
ADRA2C                0.038   alpha-2C-adrenergic receptor 
COL6A1                0.038   collagen, type VI, alpha 1 precursor 
SYNCRIP               0.034   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.034   synaptotagmin binding, cytoplasmic RNA interacting ...
COL1A2                0.034   alpha 2 type I collagen 
LOC100293055          0.034   PREDICTED: similar to COL22A1 protein 
COL4A5                0.034   type IV collagen alpha 5 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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