Guide to the Human Genome
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Name: CELSR3 Sequence: fasta or formatted (3312aa) NCBI GI: 145309304
Description:

cadherin EGF LAG seven-pass G-type receptor 3

Referenced in:

Cadherins and Related Proteins
Epidermal Growth Factor
Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1        302           6
 C cysteine            2.6         86           2
 D aspartate           5.3        175           3
 E glutamate           5.1        170           3
 F phenylalanine       3.3        109           2
 G glycine             8.7        287           4
 H histidine           2.9         96           2
 I isoleucine          2.6         87           3
 K lysine              1.3         44           2
 L leucine            10.5        347           6
 M methionine          1.2         41           2
 N asparagine          3.7        123           3
 P proline             7.4        246           3
 Q glutamine           4.0        134           2
 R arginine            7.9        263           2
 S serine              8.6        285           3
 T threonine           5.3        175           2
 V valine              7.2        238           3
 W tryptophan          1.0         34           2
 Y tyrosine            2.1         70           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 
CELSR2                0.441   cadherin EGF LAG seven-pass G-type receptor 2 
CELSR1                0.416   cadherin EGF LAG seven-pass G-type receptor 1 
FAT4                  0.085   FAT tumor suppressor homolog 4 
FAT1                  0.067   FAT tumor suppressor 1 precursor 
FAT3                  0.066   FAT tumor suppressor homolog 3 
DCHS1                 0.061   dachsous 1 precursor 
CDH23                 0.055   cadherin-like 23 isoform 1 precursor 
FAT2                  0.053   FAT tumor suppressor 2 precursor 
DCHS2                 0.050   dachsous 2 isoform 1 
DCHS2                 0.046   dachsous 2 isoform 2 
PCDH9                 0.044   protocadherin 9 isoform 2 precursor 
PCDH9                 0.044   protocadherin 9 isoform 1 precursor 
PCDH1                 0.041   protocadherin 1 isoform 2 precursor 
PCDH1                 0.041   protocadherin 1 isoform 1 precursor 
PCDH11X               0.040   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.040   protocadherin 11 X-linked isoform d 
PCDH11X               0.040   protocadherin 11 X-linked isoform c 
PCDH11X               0.040   protocadherin 11 X-linked isoform b precursor 
PCDH11Y               0.039   protocadherin 11 Y-linked isoform c 
PCDH11Y               0.039   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.039   protocadherin 11 Y-linked isoform a 
PCDH15                0.038   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.038   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.038   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.038   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.038   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.038   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.038   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.038   protocadherin 15 isoform CD1-7 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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