SYNCRIP 15657

Name: SYNCRIP	Sequence: fasta or formatted (623aa)		NCBI GI: 228008291
Description: synaptotagmin binding, cytoplasmic RNA interacting protein isoform 1		Referenced in: hnRNP RNA Editing and Other RNA Modifications
Other entries for this name: alt prot [561aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 5 alt prot [588aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 4 alt prot [464aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 2 alt prot [527aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 3 alt prot [562aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 6
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 47 2 C cysteine 0.6 4 1 D aspartate 6.4 40 2 E glutamate 7.2 45 2 F phenylalanine 3.5 22 1 G glycine 12.2 76 2 H histidine 1.9 12 1 I isoleucine 3.0 19 1 K lysine 7.4 46 3 L leucine 5.6 35 2 M methionine 1.8 11 2 N asparagine 4.0 25 2 P proline 5.3 33 3 Q glutamine 5.6 35 3 R arginine 7.2 45 3 S serine 4.0 25 2 T threonine 4.0 25 2 V valine 5.9 37 1 W tryptophan 0.8 5 1 Y tyrosine 5.8 36 4			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.928 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.877 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.873 synaptotagmin binding, cytoplasmic RNA interacting ... HNRNPR 0.816 heterogeneous nuclear ribonucleoprotein R isoform 2 [... HNRNPR 0.812 heterogeneous nuclear ribonucleoprotein R isoform 1... SYNCRIP 0.801 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.722 synaptotagmin binding, cytoplasmic RNA interacting ... HNRNPR 0.710 heterogeneous nuclear ribonucleoprotein R isoform 4... HNRNPR 0.705 heterogeneous nuclear ribonucleoprotein R isoform 3... RBM47 0.259 RNA binding motif protein 47 isoform a RBM47 0.249 RNA binding motif protein 47 isoform b A1CF 0.244 apobec-1 complementation factor isoform 2 A1CF 0.244 apobec-1 complementation factor isoform 1 RBM46 0.244 RNA binding motif protein 46 A1CF 0.232 apobec-1 complementation factor isoform 3 DND1 0.086 dead end homolog 1 PABPC4L 0.062 poly(A) binding protein, cytoplasmic 4-like PABPC4 0.055 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.055 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.055 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... PABPC3 0.051 poly(A) binding protein, cytoplasmic 3 PABPC1 0.048 poly(A) binding protein, cytoplasmic 1 PABPC1L 0.048 poly(A)-binding protein, cytoplasmic 1-like HNRNPA1 0.047 heterogeneous nuclear ribonucleoprotein A1 isoform b... BRUNOL5 0.045 bruno-like 5, RNA binding protein isoform 1 HNRNPA3 0.044 heterogeneous nuclear ribonucleoprotein A3 HNRNPA1L2 0.042 heterogeneous nuclear ribonucleoprotein A1-like [Hom... HNRNPA1L2 0.042 heterogeneous nuclear ribonucleoprotein A1-like [Hom... BRUNOL4 0.041 bruno-like 4, RNA binding protein isoform 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.