SYNCRIP 15659

Name: SYNCRIP	Sequence: fasta or formatted (588aa)		NCBI GI: 228008295
Description: synaptotagmin binding, cytoplasmic RNA interacting protein isoform 4		Referenced in: hnRNP RNA Editing and Other RNA Modifications
Other entries for this name: alt prot [623aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 1 alt prot [561aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 5 alt prot [464aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 2 alt prot [527aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 3 alt prot [562aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 6
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 44 2 C cysteine 0.7 4 1 D aspartate 6.3 37 2 E glutamate 7.1 42 2 F phenylalanine 3.7 22 1 G glycine 12.4 73 2 H histidine 2.0 12 1 I isoleucine 3.1 18 1 K lysine 7.3 43 3 L leucine 5.8 34 2 M methionine 1.5 9 2 N asparagine 4.1 24 2 P proline 5.1 30 3 Q glutamine 6.0 35 3 R arginine 7.1 42 2 S serine 4.1 24 2 T threonine 4.1 24 2 V valine 5.4 32 1 W tryptophan 0.5 3 1 Y tyrosine 6.1 36 4			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.985 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.866 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.855 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.851 synaptotagmin binding, cytoplasmic RNA interacting ... HNRNPR 0.794 heterogeneous nuclear ribonucleoprotein R isoform 2 [... HNRNPR 0.790 heterogeneous nuclear ribonucleoprotein R isoform 1... SYNCRIP 0.690 synaptotagmin binding, cytoplasmic RNA interacting ... HNRNPR 0.682 heterogeneous nuclear ribonucleoprotein R isoform 4... HNRNPR 0.677 heterogeneous nuclear ribonucleoprotein R isoform 3... RBM47 0.231 RNA binding motif protein 47 isoform a RBM47 0.221 RNA binding motif protein 47 isoform b A1CF 0.218 apobec-1 complementation factor isoform 2 A1CF 0.218 apobec-1 complementation factor isoform 1 RBM46 0.216 RNA binding motif protein 46 A1CF 0.204 apobec-1 complementation factor isoform 3 DND1 0.082 dead end homolog 1 PABPC4L 0.055 poly(A) binding protein, cytoplasmic 4-like PABPC4 0.049 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.049 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.049 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... BRUNOL5 0.047 bruno-like 5, RNA binding protein isoform 1 BRUNOL4 0.044 bruno-like 4, RNA binding protein isoform 4 HNRNPD 0.041 heterogeneous nuclear ribonucleoprotein D isoform b ... TNRC4 0.041 trinucleotide repeat containing 4 HNRNPD 0.041 heterogeneous nuclear ribonucleoprotein D isoform a ... BRUNOL4 0.040 bruno-like 4, RNA binding protein isoform 3 BRUNOL4 0.040 bruno-like 4, RNA binding protein isoform 2 BRUNOL4 0.040 bruno-like 4, RNA binding protein isoform 1 HNRNPA1 0.039 heterogeneous nuclear ribonucleoprotein A1 isoform b... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.