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Search of human proteins with 239754648
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754648 PREDICTED: hypothetical protein [Homo sapiens]
(377 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754648 PREDICTED: hypothetical protein [Homo sapiens] 791 0.0
gi|239749207 PREDICTED: hypothetical protein [Homo sapiens] 722 0.0
gi|239508971 PREDICTED: hypothetical protein [Homo sapiens] 722 0.0
gi|239743287 PREDICTED: hypothetical protein [Homo sapiens] 409 e-114
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 52 1e-06
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 39 0.010
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 39 0.010
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.017
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.017
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 38 0.017
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 38 0.017
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 38 0.017
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 38 0.017
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 38 0.017
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.022
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 37 0.022
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 37 0.029
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 36 0.050
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 35 0.11
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 35 0.11
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 35 0.11
gi|7705753 complement component 1, q subcomponent, A chain precu... 35 0.11
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 35 0.11
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 35 0.11
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 35 0.14
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 34 0.19
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 34 0.25
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 34 0.25
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 33 0.32
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 33 0.32
>gi|239754648 PREDICTED: hypothetical protein [Homo sapiens]
Length = 377
Score = 791 bits (2042), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA
Sbjct: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
Query: 61 QPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKD 120
QPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKD
Sbjct: 61 QPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKD 120
Query: 121 ELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQ 180
ELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQ
Sbjct: 121 ELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQ 180
Query: 181 ACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRAL 240
ACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRAL
Sbjct: 181 ACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRAL 240
Query: 241 ILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCP 300
ILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCP
Sbjct: 241 ILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCP 300
Query: 301 KAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQ 360
KAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQ
Sbjct: 301 KAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQ 360
Query: 361 QVHAHRGGSRALPKQRH 377
QVHAHRGGSRALPKQRH
Sbjct: 361 QVHAHRGGSRALPKQRH 377
>gi|239749207 PREDICTED: hypothetical protein [Homo sapiens]
Length = 369
Score = 722 bits (1864), Expect = 0.0
Identities = 352/381 (92%), Positives = 354/381 (92%), Gaps = 16/381 (4%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA
Sbjct: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
Query: 61 QPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQT----GISRGVQG 116
QPPPHLQRPQVQTNVLLSPRR+ G P R T +SRGVQG
Sbjct: 61 QPPPHLQRPQVQTNVLLSPRRLSGE------------PQRTRPLPPTTFSNVRVSRGVQG 108
Query: 117 DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ 176
DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ
Sbjct: 109 DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ 168
Query: 177 GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK 236
GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK
Sbjct: 169 GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK 228
Query: 237 IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR 296
IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR
Sbjct: 229 IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR 288
Query: 297 WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA 356
WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA
Sbjct: 289 WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA 348
Query: 357 GRGQQVHAHRGGSRALPKQRH 377
GRGQQVHAHRGGSRALPKQRH
Sbjct: 349 GRGQQVHAHRGGSRALPKQRH 369
>gi|239508971 PREDICTED: hypothetical protein [Homo sapiens]
Length = 369
Score = 722 bits (1864), Expect = 0.0
Identities = 352/381 (92%), Positives = 354/381 (92%), Gaps = 16/381 (4%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA
Sbjct: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGA 60
Query: 61 QPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQT----GISRGVQG 116
QPPPHLQRPQVQTNVLLSPRR+ G P R T +SRGVQG
Sbjct: 61 QPPPHLQRPQVQTNVLLSPRRLSGE------------PQRTRPLPPTTFSNVRVSRGVQG 108
Query: 117 DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ 176
DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ
Sbjct: 109 DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQ 168
Query: 177 GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK 236
GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK
Sbjct: 169 GLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQK 228
Query: 237 IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR 296
IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR
Sbjct: 229 IRALILHHTHQHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLR 288
Query: 297 WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA 356
WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA
Sbjct: 289 WSCPKAGYQLCVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPA 348
Query: 357 GRGQQVHAHRGGSRALPKQRH 377
GRGQQVHAHRGGSRALPKQRH
Sbjct: 349 GRGQQVHAHRGGSRALPKQRH 369
>gi|239743287 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 409 bits (1052), Expect = e-114
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 187 MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTH 246
MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTH
Sbjct: 1 MQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQKIRALILHHTH 60
Query: 247 QHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQL 306
QHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQL
Sbjct: 61 QHLGAVEVSRVDEGLWGVTEEVSIYHRHEGEPEDAFLRQHVPFVVHQDLRWSCPKAGYQL 120
Query: 307 CVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHR 366
CVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHR
Sbjct: 121 CVIPTSAAWRTAHKVGQLRGPATGLSHAHRGPGSIGGTALQHGPVEQAPAGRGQQVHAHR 180
Query: 367 GGSRALPKQRH 377
GGSRALPKQRH
Sbjct: 181 GGSRALPKQRH 191
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 51.6 bits (122), Expect = 1e-06
Identities = 56/182 (30%), Positives = 70/182 (38%), Gaps = 27/182 (14%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G P G F + G P G+ F G P G + G E P G +
Sbjct: 542 GDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQ----PGPPGEDGERGAEGPPGPTGQAGE 597
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKDE 121
P P LL PR GP GV+G+ G P G +G+V G G P +
Sbjct: 598 PGPR---------GLLGPRGSPGPTGRPGVTGIDGAP--GAKGNVG---PPGEPGPPGQQ 643
Query: 122 LDLVAVGHPHPQG----PGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQG 177
+ + G P PQG PGE+G + PG GS P LGH H+ AQG
Sbjct: 644 GNHGSQGLPGPQGLIGTPGEKGPPGNPGI---PGLPGSDGP--LGHPGHEGPTGEKGAQG 698
Query: 178 LP 179
P
Sbjct: 699 PP 700
Score = 35.4 bits (80), Expect = 0.085
Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 40/188 (21%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAG-LG 59
+GG P GAS P G P G G G + G + P G +G
Sbjct: 1291 VGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGE----KGAKGEPGPDGPPGRTGPMG 1346
Query: 60 AQPPPH---------LQRPQVQTNVLLSPRRV--------------------RGPLWGLG 90
A+ PP + P + +L +P ++ +G +G
Sbjct: 1347 ARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIG 1406
Query: 91 VSGLIGIPAEGREGSVQ--TGISR--GVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDV 146
+ GLIG P E E Q G+ G +GDP + ++GHP P PG G K
Sbjct: 1407 LIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGP--PGVAGPLGQKGS 1464
Query: 147 GVDPGTLG 154
PG++G
Sbjct: 1465 KGSPGSMG 1472
Score = 34.3 bits (77), Expect = 0.19
Identities = 47/158 (29%), Positives = 61/158 (38%), Gaps = 13/158 (8%)
Query: 8 GASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPHLQ 67
G P + G P G + G R P H G + G + G P +
Sbjct: 866 GEKGLPGLQGPPGFPGPKGPPGHQGKDGR-PGHPGQRGELGFQGQT-----GPPGPAGVL 919
Query: 68 RPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPA-EGREGSVQTGISRGVQGDPKDELDLVA 126
PQ +T + P RGP G G G+P EGREG+ G G E
Sbjct: 920 GPQGKTGEV-GPLGERGPPGPPGPPGEQGLPGLEGREGAKG---ELGPPGPLGKEGPAGL 975
Query: 127 VGHPHPQG-PGERGSTVFKDVGVDPGTLGSQ-SPSQLG 162
G P P+G PG+ G T K PG +G+ SP + G
Sbjct: 976 RGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERG 1013
Score = 32.7 bits (73), Expect = 0.55
Identities = 47/168 (27%), Positives = 66/168 (39%), Gaps = 34/168 (20%)
Query: 2 GGATPSGASHFPPIGGA---PVAVGEEAVFTAAG--AAARWPLHTGGAEQFGEEAVPEGA 56
G P+G+ P + G P AVGE+ AG P G GE+ +
Sbjct: 1178 GPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAPGIPGPKGDIGEKG--DSG 1235
Query: 57 GLGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQG 116
GA PP + P + +G + G+ G +G P + G+S G+ G
Sbjct: 1236 PSGAAGPPGKKGPPGEDGA-------KGSVGPTGLPGDLGPPGD-------PGVS-GIDG 1280
Query: 117 DPKDELDLVAVGHPHPQG-PGERGSTVFKDVGVDPGTLGSQSPSQLGH 163
P ++ D VG P P G GE G+ PG G + PS GH
Sbjct: 1281 SPGEKGDPGDVGGPGPPGASGEPGA---------PGPPGKRGPS--GH 1317
Score = 31.2 bits (69), Expect = 1.6
Identities = 43/181 (23%), Positives = 65/181 (35%), Gaps = 31/181 (17%)
Query: 1 MGGATPSGASHFP----PIG--GAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPE 54
+G + P G FP P G G P G + + G P G G
Sbjct: 403 VGPSGPPGPPGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSFKG------ 456
Query: 55 GAGLGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGL---IGIPA----EGREGSVQ 107
PP Q+ Q Q + + ++GP +G++G +G+P +G EG+
Sbjct: 457 -------PPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEG 509
Query: 108 TGISRGVQGDPKDELDLVAVGHPHPQG----PGERGSTVFKDVGVDPGTLGSQSP-SQLG 162
RG+QG + +G P G PG+ G + PG G + G
Sbjct: 510 PQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFG 569
Query: 163 H 163
H
Sbjct: 570 H 570
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 38.5 bits (88), Expect = 0.010
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 12/161 (7%)
Query: 6 PSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQP-PP 64
PSG P + G P A+G + G G G +P GL P PP
Sbjct: 384 PSGVPGLPALSGVPGALGPQGFPGLKGDQG-----NPGRTTIGAAGLPGRDGLPGPPGPP 438
Query: 65 HLQRPQVQTNVLLSPRR----VRGPLWGLGVSGLIGIPAEGREGSVQTGI-SRGVQGDPK 119
P+ +T L + +RG G GL GI + + G+ + G G+P
Sbjct: 439 GPPSPEFETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPG 498
Query: 120 DELDLVAVGHPHPQGP-GERGSTVFKDVGVDPGTLGSQSPS 159
+G P +G G+RGS + PG +G PS
Sbjct: 499 PPGPWGLIGLPGLKGARGDRGSGGAQGPAGAPGLVGPLGPS 539
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 38.5 bits (88), Expect = 0.010
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 12/161 (7%)
Query: 6 PSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQP-PP 64
PSG P + G P A+G + G G G +P GL P PP
Sbjct: 383 PSGVPGLPALSGVPGALGPQGFPGLKGDQG-----NPGRTTIGAAGLPGRDGLPGPPGPP 437
Query: 65 HLQRPQVQTNVLLSPRR----VRGPLWGLGVSGLIGIPAEGREGSVQTGI-SRGVQGDPK 119
P+ +T L + +RG G GL GI + + G+ + G G+P
Sbjct: 438 GPPSPEFETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPG 497
Query: 120 DELDLVAVGHPHPQGP-GERGSTVFKDVGVDPGTLGSQSPS 159
+G P +G G+RGS + PG +G PS
Sbjct: 498 PPGPWGLIGLPGLKGARGDRGSGGAQGPAGAPGLVGPLGPS 538
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.7 bits (86), Expect = 0.017
Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G PSG + G P GE + A G R P G + G P G
Sbjct: 531 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR-PGDAGPQGKVGPSGAPGEDGRPGP 589
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKDE 121
P P R Q P+ G G GL G P G++G P +
Sbjct: 590 PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP--------------GLRGLPGKD 635
Query: 122 LDLVAVGHPHPQGP-GERG 139
+ A G P P GP GERG
Sbjct: 636 GETGAAGPPGPAGPAGERG 654
Score = 31.6 bits (70), Expect = 1.2
Identities = 51/177 (28%), Positives = 63/177 (35%), Gaps = 22/177 (12%)
Query: 1 MGGATPSGASHFPP------IGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPE 54
MG P GA+ P + GAP G GAA P G A + GE+ P
Sbjct: 602 MGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGP-PGPAGPAGERGEQGAPG 660
Query: 55 GAGLGAQP-PPHLQRPQVQTNVLLSPRRVRGPLWGL-GVSGLIGIPAE-GREGSVQTGIS 111
+G P PP + P P GL G G G P E G G+
Sbjct: 661 PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP--GLVGPRGERGFPGERGSPGAQGLQGP 718
Query: 112 RGVQGDPKDELDLVAVGHPHPQG----------PGERGSTVFKDVGVDPGTLGSQSP 158
RG+ G P + A G P G PGERG+ D G +G + P
Sbjct: 719 RGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGP 775
Score = 30.4 bits (67), Expect = 2.7
Identities = 46/162 (28%), Positives = 59/162 (36%), Gaps = 24/162 (14%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G P+GAS P G P A G AGA P G G P+GA
Sbjct: 399 GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGA----PGFPGPRGPPG----PQGATGPLG 450
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPA-EGREGSVQTGISRGVQGDPKD 120
P P + + +GP G +G G P G EG RG +G+P
Sbjct: 451 PKGQTGEPGI-----AGFKGEQGPKGEPGPAGPQGAPGPAGEEG------KRGARGEPG- 498
Query: 121 ELDLVAVGHPHPQG-PGERGSTVFKDVGVDPGTLGSQSPSQL 161
+ +G P +G PG RG + G G + PS L
Sbjct: 499 --GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGL 538
Score = 29.6 bits (65), Expect = 4.6
Identities = 54/183 (29%), Positives = 64/183 (34%), Gaps = 31/183 (16%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAG-AAARWPLHTGGAE-QFGEEAV--PEGAG 57
G P+G + P G P A GE+ G A A P GA G V P+GA
Sbjct: 828 GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGAR 887
Query: 58 LGAQPPP----------HLQRPQVQTNV----LLSPRRVRGPLWGLGVSGLIGIPAEGRE 103
GAQ PP + P N P GP G SG G G
Sbjct: 888 -GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPG--RAGEP 944
Query: 104 GSVQTGISRGVQGDPKDELDLVAVGHPHPQG----------PGERGSTVFKDVGVDPGTL 153
G G +G+P D+ A G P PQG PG+RG F + G
Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP 1004
Query: 154 GSQ 156
G Q
Sbjct: 1005 GKQ 1007
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.7 bits (86), Expect = 0.017
Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G PSG + G P GE + A G R P G + G P G
Sbjct: 462 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR-PGDAGPQGKVGPSGAPGEDGRPGP 520
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKDE 121
P P R Q P+ G G GL G P G++G P +
Sbjct: 521 PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP--------------GLRGLPGKD 566
Query: 122 LDLVAVGHPHPQGP-GERG 139
+ A G P P GP GERG
Sbjct: 567 GETGAAGPPGPAGPAGERG 585
Score = 31.6 bits (70), Expect = 1.2
Identities = 51/177 (28%), Positives = 63/177 (35%), Gaps = 22/177 (12%)
Query: 1 MGGATPSGASHFPP------IGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPE 54
MG P GA+ P + GAP G GAA P G A + GE+ P
Sbjct: 533 MGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGP-PGPAGPAGERGEQGAPG 591
Query: 55 GAGLGAQP-PPHLQRPQVQTNVLLSPRRVRGPLWGL-GVSGLIGIPAE-GREGSVQTGIS 111
+G P PP + P P GL G G G P E G G+
Sbjct: 592 PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP--GLVGPRGERGFPGERGSPGAQGLQGP 649
Query: 112 RGVQGDPKDELDLVAVGHPHPQG----------PGERGSTVFKDVGVDPGTLGSQSP 158
RG+ G P + A G P G PGERG+ D G +G + P
Sbjct: 650 RGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGP 706
Score = 30.4 bits (67), Expect = 2.7
Identities = 46/162 (28%), Positives = 59/162 (36%), Gaps = 24/162 (14%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G P+GAS P G P A G AGA P G G P+GA
Sbjct: 330 GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGA----PGFPGPRGPPG----PQGATGPLG 381
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPA-EGREGSVQTGISRGVQGDPKD 120
P P + + +GP G +G G P G EG RG +G+P
Sbjct: 382 PKGQTGEPGI-----AGFKGEQGPKGEPGPAGPQGAPGPAGEEG------KRGARGEPG- 429
Query: 121 ELDLVAVGHPHPQG-PGERGSTVFKDVGVDPGTLGSQSPSQL 161
+ +G P +G PG RG + G G + PS L
Sbjct: 430 --GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGL 469
Score = 29.6 bits (65), Expect = 4.6
Identities = 54/183 (29%), Positives = 64/183 (34%), Gaps = 31/183 (16%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAG-AAARWPLHTGGAE-QFGEEAV--PEGAG 57
G P+G + P G P A GE+ G A A P GA G V P+GA
Sbjct: 759 GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGAR 818
Query: 58 LGAQPPP----------HLQRPQVQTNV----LLSPRRVRGPLWGLGVSGLIGIPAEGRE 103
GAQ PP + P N P GP G SG G G
Sbjct: 819 -GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPG--RAGEP 875
Query: 104 GSVQTGISRGVQGDPKDELDLVAVGHPHPQG----------PGERGSTVFKDVGVDPGTL 153
G G +G+P D+ A G P PQG PG+RG F + G
Sbjct: 876 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP 935
Query: 154 GSQ 156
G Q
Sbjct: 936 GKQ 938
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 37.7 bits (86), Expect = 0.017
Identities = 40/136 (29%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 38 PLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGI 97
P H G A G P GL +P PH LL P +RGP G+ G G
Sbjct: 1091 PGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGP---PGLPGFPGS 1147
Query: 98 PA-------EGREG-------SVQTGISRGVQGDPKDELDLVAVGHPHPQG-PGERGSTV 142
P +GR+G +TG+ R G P+ G+P QG G+RG+
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPG-PR--------GNPGAQGAKGDRGAPG 1198
Query: 143 FKDVGVDPGTLGSQSP 158
F + G +G P
Sbjct: 1199 FPGLPGRKGAMGDAGP 1214
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 37.7 bits (86), Expect = 0.017
Identities = 40/136 (29%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 38 PLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGI 97
P H G A G P GL +P PH LL P +RGP G+ G G
Sbjct: 1091 PGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGP---PGLPGFPGS 1147
Query: 98 PA-------EGREG-------SVQTGISRGVQGDPKDELDLVAVGHPHPQG-PGERGSTV 142
P +GR+G +TG+ R G P+ G+P QG G+RG+
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPG-PR--------GNPGAQGAKGDRGAPG 1198
Query: 143 FKDVGVDPGTLGSQSP 158
F + G +G P
Sbjct: 1199 FPGLPGRKGAMGDAGP 1214
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 37.7 bits (86), Expect = 0.017
Identities = 40/136 (29%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 38 PLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGI 97
P H G A G P GL +P PH LL P +RGP G+ G G
Sbjct: 1091 PGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGP---PGLPGFPGS 1147
Query: 98 PA-------EGREG-------SVQTGISRGVQGDPKDELDLVAVGHPHPQG-PGERGSTV 142
P +GR+G +TG+ R G P+ G+P QG G+RG+
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPG-PR--------GNPGAQGAKGDRGAPG 1198
Query: 143 FKDVGVDPGTLGSQSP 158
F + G +G P
Sbjct: 1199 FPGLPGRKGAMGDAGP 1214
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 37.7 bits (86), Expect = 0.017
Identities = 40/136 (29%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 38 PLHTGGAEQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGI 97
P H G A G P GL +P PH LL P +RGP G+ G G
Sbjct: 1091 PGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGP---PGLPGFPGS 1147
Query: 98 PA-------EGREG-------SVQTGISRGVQGDPKDELDLVAVGHPHPQG-PGERGSTV 142
P +GR+G +TG+ R G P+ G+P QG G+RG+
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPG-PR--------GNPGAQGAKGDRGAPG 1198
Query: 143 FKDVGVDPGTLGSQSP 158
F + G +G P
Sbjct: 1199 FPGLPGRKGAMGDAGP 1214
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 37.7 bits (86), Expect = 0.017
Identities = 51/191 (26%), Positives = 70/191 (36%), Gaps = 31/191 (16%)
Query: 38 PLHTGGA--EQFGEEAVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLI 95
PLH GG + F P+G G P + PQ +R GP LG G
Sbjct: 641 PLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQ-------GMQRHPGPHGPLGPQG-- 691
Query: 96 GIPAEGREGSVQTGISRGVQGDPKDELDLVAVGHPHPQGP-GERGSTVFKDVGVDPGTLG 154
G +GS G QG P + + G P PQG G +G + + PG G
Sbjct: 692 ---PPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRG 748
Query: 155 SQSPSQLGHGAHDIVVAHHIAQGLPQACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQ 214
Q P H QG P + + G V Q +G + P P P +
Sbjct: 749 MQGPPH-----------PHGIQGGPGSQGIQGP----VSQGPLMGLNPRGMQGP-PGPRE 792
Query: 215 ELGPADERLVV 225
GPA + +++
Sbjct: 793 NQGPAPQGMIM 803
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.4 bits (85), Expect = 0.022
Identities = 44/174 (25%), Positives = 57/174 (32%), Gaps = 16/174 (9%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARW-----------PLHTGGAEQFGEE 50
G P GA P G P G GA P G Q G
Sbjct: 245 GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPR 304
Query: 51 AVPEGAGLGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAE-GREGSVQTG 109
+P G P P R P GP G G +G E G +G +
Sbjct: 305 GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSE 364
Query: 110 ISRGVQGDPKDELDLVA---VGHPHPQG-PGERGSTVFKDVGVDPGTLGSQSPS 159
+GV+G+P A G+P G PG +G+ + PG G++ PS
Sbjct: 365 GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPS 418
Score = 31.2 bits (69), Expect = 1.6
Identities = 48/171 (28%), Positives = 56/171 (32%), Gaps = 34/171 (19%)
Query: 2 GGATPSGASHFP-PIG--GAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGL 58
G P+G + P PIG GAP A G GA G A + G AG
Sbjct: 839 GPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATG----FPGAAGRVGPPGPSGNAGP 894
Query: 59 GAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDP 118
P P + PR GP G G G P G +G P
Sbjct: 895 PGPPGPAGKEGGK------GPRGETGPAGRPGEVGPPGPPGPA-----------GEKGSP 937
Query: 119 KDELDLVAVGHPHPQG----------PGERGSTVFKDVGVDPGTLGSQSPS 159
+ A G P PQG PG+RG F + G G Q PS
Sbjct: 938 GADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPS 988
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 37.4 bits (85), Expect = 0.022
Identities = 44/162 (27%), Positives = 56/162 (34%), Gaps = 38/162 (23%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G P+G+ P + G P A G E P TG + GE P
Sbjct: 1498 GPPGPAGSRGLPGVAGRPGAKGPEGP----------PGPTGRQGEKGEPGRPGD------ 1541
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAE-GREGSVQTGISRGVQGDPKD 120
P V + P+ +G + G G G+ E G G V G G +GDP D
Sbjct: 1542 -------PAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPG-DPGPKGDPGD 1593
Query: 121 ELDLVAVGHPHPQG----PGERGSTVFKDVGVDPGTLGSQSP 158
+ G P G PGE+G DPG G P
Sbjct: 1594 RGPIGLTGRAGPPGDSGPPGEKG---------DPGRPGPPGP 1626
Score = 30.8 bits (68), Expect = 2.1
Identities = 52/195 (26%), Positives = 62/195 (31%), Gaps = 53/195 (27%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARW-----------PLHTGGAEQFGEE 50
G AT G FP G P + G GA P G GE
Sbjct: 1290 GSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEP 1349
Query: 51 AVP------EGAGLGAQ---PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEG 101
P EG GL + P P P RGPL G G G+P
Sbjct: 1350 GAPGQVIGGEGPGLPGRKGDPGPS------------GPPGPRGPLGDPGPRGPPGLPGTA 1397
Query: 102 REGSVQTGISRGVQGDPKDELDLVAVGH---------PHPQGP-------GERGSTVFKD 145
+G RG +G P +A G P PQGP GE+G +
Sbjct: 1398 MKGDKG---DRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGA 1454
Query: 146 VGV--DPGTLGSQSP 158
G+ PG+ G Q P
Sbjct: 1455 PGLPGQPGSPGEQGP 1469
Score = 28.9 bits (63), Expect = 7.9
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 100 EGREGSVQTGISRGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSP 158
+GR+G + G G P + V+V P P GE+G K +PG+ G Q P
Sbjct: 2072 QGRDGPPGLPGTPGPPGPPGPK---VSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGP 2127
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 37.0 bits (84), Expect = 0.029
Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 20/149 (13%)
Query: 82 VRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKDELDLVAVGHPHPQG-PGERGS 140
+RGP +G+ G+ G G +G RGV G P G P P G G+ G
Sbjct: 1387 MRGPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGVP---------GSPGPPGRKGDTGE 1437
Query: 141 TVFKDVGVDPGTLGSQSPSQLGHG--AHDIVVAHHIAQGLPQACRVLGMQPVCVMQDHSL 198
+ PG +G P G G ++V H P LGM +
Sbjct: 1438 DGYPGGPGPPGPIGDPGPKGFGPGYLGGFLLVLHSQTDQEPTC--PLGMPRLWT------ 1489
Query: 199 GCQVTYLGNPDPHPGQELGPADERLVVFA 227
G + YL + Q+LG A L VF+
Sbjct: 1490 GYSLLYLEGQEKAHNQDLGLAGSCLPVFS 1518
Score = 35.4 bits (80), Expect = 0.085
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAE--------GREGSVQTGISRG 113
PP L RP ++ P +G G+ G GIP G+ GS + G
Sbjct: 389 PPGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPGAPG 448
Query: 114 VQGDPKDELDLVAVGHPHPQG-------PGERGSTVFKD----VGVDPGTLGSQSPSQL 161
+QG P + +VG+P PQG PG RG K +PG +G P L
Sbjct: 449 LQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGL 507
Score = 32.7 bits (73), Expect = 0.55
Identities = 43/162 (26%), Positives = 57/162 (35%), Gaps = 25/162 (15%)
Query: 17 GAPVAVGEEAVFTAAGAAARW--PLHTGGAEQFGEEAVPEGAGLGAQP----PPHLQRPQ 70
G P GE A+ + G P G + G++ P G +P PP R +
Sbjct: 957 GPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGE 1016
Query: 71 VQTNVLLSPRRVRGPLWGLGVSGLIGIPA----EGREGSVQ----TGIS-----RGVQGD 117
P GP G+ G IG P +G GS +GI +G +GD
Sbjct: 1017 PGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGD 1076
Query: 118 PKDELDLVAVGHPHPQG-PGERGSTVFKDVGVDPGTLGSQSP 158
P G P P+G PG G + G G Q P
Sbjct: 1077 PASHF-----GPPGPKGEPGSPGCPGHFGASGEQGLPGIQGP 1113
Score = 29.6 bits (65), Expect = 4.6
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 79 PRRVRGPLWGLGVSGLIGIPAE-------GREGSVQTGISRGVQGDPK-DELDLVAVGHP 130
P +GP+ LG G IG+ E G G+ +G G P LD + GHP
Sbjct: 69 PPGPQGPIGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKGDKGPTGVPGFPGLDGIP-GHP 127
Query: 131 HPQGP-GERGSTVFKDVGVDPGTLGSQSP----SQLGH 163
P GP G+ G + DPG G + LGH
Sbjct: 128 GPPGPRGKPGMSGHNGSRGDPGFPGGRGALGPGGPLGH 165
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 36.2 bits (82), Expect = 0.050
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 82 VRGPLWGLGVSGLIGIPAEGREGSVQTGI-SRGVQGDPKDELDLVAVGHPHPQG-PGERG 139
V+G G+G G G P G E Q + S+G +G+P D + AVG P P+G G G
Sbjct: 1592 VKGEKGGVGSKGPQGPPGPGGEAGNQGRLGSQGNKGEPGDLGEKGAVGFPGPRGLQGNDG 1651
Query: 140 STVFKDVG 147
S + VG
Sbjct: 1652 SPGYGSVG 1659
Score = 29.6 bits (65), Expect = 4.6
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 18/82 (21%)
Query: 90 GVSGLIGIPA-EGREGSVQTGISRGVQGDPKDELDLVAVGHPHPQGP----GERGSTVFK 144
G G GIP +G EGS+ +G +G+ + + VG PQGP GE G
Sbjct: 1561 GPQGTAGIPGPDGLEGSLGLKGPQGPRGEAGVKGEKGGVGSKGPQGPPGPGGEAG----- 1615
Query: 145 DVGVDPGTLGSQ----SPSQLG 162
+ G LGSQ P LG
Sbjct: 1616 ----NQGRLGSQGNKGEPGDLG 1633
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.0 bits (79), Expect = 0.11
Identities = 38/153 (24%), Positives = 51/153 (33%), Gaps = 17/153 (11%)
Query: 6 PSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPH 65
P+G FP G P A G + G P G + G GL +P P
Sbjct: 1034 PAGLRGFPGERGLPGAQGAPGLKGGEGPQGP-PGPVGSPGERGSAGTAGPIGLPGRPGPQ 1092
Query: 66 LQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKDELDLV 125
+ +GP GV G +G+P G G P ++ D
Sbjct: 1093 GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPA-----------GPAGSPGEDGDKG 1141
Query: 126 AVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSP 158
+G P G++GS K PG G Q P
Sbjct: 1142 EIGEP-----GQKGSKGDKGENGPPGPPGLQGP 1169
Score = 30.8 bits (68), Expect = 2.1
Identities = 51/192 (26%), Positives = 64/192 (33%), Gaps = 49/192 (25%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAAR----WPLHTGGAEQFGEEAVPEGAG 57
G P G++ FP GA G V G + P + GA + P+G
Sbjct: 859 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 918
Query: 58 LGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGD 117
G PP P RGP G G +G P +G G
Sbjct: 919 GGDGPP--------------GPPGERGPQ---GPQGPVGFPGP-----------KGPPGP 950
Query: 118 P-KDELDLVAVGHPHPQGPGERGSTVFKDVGVDP---GTLGSQSPS----QLGHGAHDIV 169
P KD L P PG+RG T F+ P G +G Q P+ +G H
Sbjct: 951 PGKDGL---------PGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 1001
Query: 170 VAHHIAQGLPQA 181
QGLP A
Sbjct: 1002 PGPPGEQGLPGA 1013
Score = 29.3 bits (64), Expect = 6.1
Identities = 56/177 (31%), Positives = 70/177 (39%), Gaps = 34/177 (19%)
Query: 1 MGGATPSGASHFPPIG-----GAPVAVGEEAVFTAAGAAAR----WPLHTGGAE-QFGEE 50
+G P+G + PIG G P GE+ + AAG P G + G
Sbjct: 981 VGPQGPTGETG--PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR 1038
Query: 51 AVPEGAGL-GAQPPPHL---QRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSV 106
P GL GAQ P L + PQ + SP G G +G IG+P GR G
Sbjct: 1039 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP----GERGSAGTAGPIGLP--GRPGP- 1091
Query: 107 QTGISRGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLG-SQSPSQLG 162
QG P + A G PQGP R V VG+ PG G + SP + G
Sbjct: 1092 --------QGPPGPAGEKGAPGEKGPQGPAGRDG-VQGPVGL-PGPAGPAGSPGEDG 1138
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.0 bits (79), Expect = 0.11
Identities = 38/153 (24%), Positives = 51/153 (33%), Gaps = 17/153 (11%)
Query: 6 PSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPH 65
P+G FP G P A G + G P G + G GL +P P
Sbjct: 983 PAGLRGFPGERGLPGAQGAPGLKGGEGPQGP-PGPVGSPGERGSAGTAGPIGLPGRPGPQ 1041
Query: 66 LQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKDELDLV 125
+ +GP GV G +G+P G G P ++ D
Sbjct: 1042 GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPA-----------GPAGSPGEDGDKG 1090
Query: 126 AVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSP 158
+G P G++GS K PG G Q P
Sbjct: 1091 EIGEP-----GQKGSKGDKGENGPPGPPGLQGP 1118
Score = 30.8 bits (68), Expect = 2.1
Identities = 51/192 (26%), Positives = 64/192 (33%), Gaps = 49/192 (25%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAAR----WPLHTGGAEQFGEEAVPEGAG 57
G P G++ FP GA G V G + P + GA + P+G
Sbjct: 808 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 867
Query: 58 LGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGD 117
G PP P RGP G G +G P +G G
Sbjct: 868 GGDGPP--------------GPPGERGPQ---GPQGPVGFPGP-----------KGPPGP 899
Query: 118 P-KDELDLVAVGHPHPQGPGERGSTVFKDVGVDP---GTLGSQSPS----QLGHGAHDIV 169
P KD L P PG+RG T F+ P G +G Q P+ +G H
Sbjct: 900 PGKDGL---------PGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 950
Query: 170 VAHHIAQGLPQA 181
QGLP A
Sbjct: 951 PGPPGEQGLPGA 962
Score = 29.3 bits (64), Expect = 6.1
Identities = 56/177 (31%), Positives = 70/177 (39%), Gaps = 34/177 (19%)
Query: 1 MGGATPSGASHFPPIG-----GAPVAVGEEAVFTAAGAAAR----WPLHTGGAE-QFGEE 50
+G P+G + PIG G P GE+ + AAG P G + G
Sbjct: 930 VGPQGPTGETG--PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR 987
Query: 51 AVPEGAGL-GAQPPPHL---QRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSV 106
P GL GAQ P L + PQ + SP G G +G IG+P GR G
Sbjct: 988 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP----GERGSAGTAGPIGLP--GRPGP- 1040
Query: 107 QTGISRGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLG-SQSPSQLG 162
QG P + A G PQGP R V VG+ PG G + SP + G
Sbjct: 1041 --------QGPPGPAGEKGAPGEKGPQGPAGRDG-VQGPVGL-PGPAGPAGSPGEDG 1087
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.0 bits (79), Expect = 0.11
Identities = 38/153 (24%), Positives = 51/153 (33%), Gaps = 17/153 (11%)
Query: 6 PSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPH 65
P+G FP G P A G + G P G + G GL +P P
Sbjct: 1022 PAGLRGFPGERGLPGAQGAPGLKGGEGPQGP-PGPVGSPGERGSAGTAGPIGLPGRPGPQ 1080
Query: 66 LQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKDELDLV 125
+ +GP GV G +G+P G G P ++ D
Sbjct: 1081 GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPA-----------GPAGSPGEDGDKG 1129
Query: 126 AVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSP 158
+G P G++GS K PG G Q P
Sbjct: 1130 EIGEP-----GQKGSKGDKGENGPPGPPGLQGP 1157
Score = 30.8 bits (68), Expect = 2.1
Identities = 51/192 (26%), Positives = 64/192 (33%), Gaps = 49/192 (25%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAAR----WPLHTGGAEQFGEEAVPEGAG 57
G P G++ FP GA G V G + P + GA + P+G
Sbjct: 847 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 906
Query: 58 LGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGD 117
G PP P RGP G G +G P +G G
Sbjct: 907 GGDGPP--------------GPPGERGPQ---GPQGPVGFPGP-----------KGPPGP 938
Query: 118 P-KDELDLVAVGHPHPQGPGERGSTVFKDVGVDP---GTLGSQSPS----QLGHGAHDIV 169
P KD L P PG+RG T F+ P G +G Q P+ +G H
Sbjct: 939 PGKDGL---------PGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 989
Query: 170 VAHHIAQGLPQA 181
QGLP A
Sbjct: 990 PGPPGEQGLPGA 1001
Score = 29.3 bits (64), Expect = 6.1
Identities = 56/177 (31%), Positives = 70/177 (39%), Gaps = 34/177 (19%)
Query: 1 MGGATPSGASHFPPIG-----GAPVAVGEEAVFTAAGAAAR----WPLHTGGAE-QFGEE 50
+G P+G + PIG G P GE+ + AAG P G + G
Sbjct: 969 VGPQGPTGETG--PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR 1026
Query: 51 AVPEGAGL-GAQPPPHL---QRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSV 106
P GL GAQ P L + PQ + SP G G +G IG+P GR G
Sbjct: 1027 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP----GERGSAGTAGPIGLP--GRPGP- 1079
Query: 107 QTGISRGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLG-SQSPSQLG 162
QG P + A G PQGP R V VG+ PG G + SP + G
Sbjct: 1080 --------QGPPGPAGEKGAPGEKGPQGPAGRDG-VQGPVGL-PGPAGPAGSPGEDG 1126
>gi|7705753 complement component 1, q subcomponent, A chain
precursor [Homo sapiens]
Length = 245
Score = 35.0 bits (79), Expect = 0.11
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 90 GVSGLIGIPAEGREGSVQTGIS--RGVQGDPKDELDLVAVGHPHPQGP-GERGSTVFKDV 146
G GL G E ++TGI +G QG+P + VG+P P GP G RG K
Sbjct: 43 GRPGLKGEQGEPGAPGIRTGIQGLKGDQGEPGPSGNPGKVGYPGPSGPLGARGIPGIKGT 102
Query: 147 GVDPGTLGSQ 156
PG + Q
Sbjct: 103 KGSPGNIKDQ 112
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 35.0 bits (79), Expect = 0.11
Identities = 46/173 (26%), Positives = 61/173 (35%), Gaps = 32/173 (18%)
Query: 2 GGATPSGASHFPPIG-----------GAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEE 50
G P G+ P IG G P A G V R P G E
Sbjct: 346 GPPGPYGSPGAPGIGQQGIKGERGQEGRPGAPGPIGVGEPGQPGPRGPEGVPGERGLPGE 405
Query: 51 AVPEGAG-LGAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTG 109
P G G++ P Q Q LS + +G + +G G +GIP G +G
Sbjct: 406 GFPGPKGEKGSEGPTGPQGLQG-----LSIKGEKGDIGPVGPQGPMGIPGIGSQGE---- 456
Query: 110 ISRGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLG 162
+G+QG +G P PQGP +G K G G + P +G
Sbjct: 457 --QGIQGP---------IGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIG 498
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 35.0 bits (79), Expect = 0.11
Identities = 54/235 (22%), Positives = 70/235 (29%), Gaps = 21/235 (8%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G P G P + G P G G G Q G P AG
Sbjct: 865 GEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGP----PGAKGQEGAHGAPGAAG-NPG 919
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPA-EGREGSVQTGISRGVQGDPKD 120
P H+ P GP +G GL G P +G G G G
Sbjct: 920 APGHVGAPGPS-----------GPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGP 968
Query: 121 ELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLPQ 180
D A G P P G G+ G + PG LG+++ G+ + + +G
Sbjct: 969 RGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRG 1028
Query: 181 ACRVLGMQPVCVMQDHSLGCQVTYLGNPDPHPGQELGPADERLVVFAEAWGPVNQ 235
A + G G V P PG + P L F GP +
Sbjct: 1029 APGIPGSPG----SRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGR 1079
Score = 33.1 bits (74), Expect = 0.42
Identities = 50/163 (30%), Positives = 57/163 (34%), Gaps = 24/163 (14%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGL--- 58
G A P G P I G + GE G H G G P G
Sbjct: 1150 GEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQG-HPGVPGFMGPPGNPGPPGADGI 1208
Query: 59 -GAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPA-EGREGSVQTGISRGVQG 116
GA PP +Q SP + GP G SGL GIP EG+EG G G
Sbjct: 1209 AGAAGPPGIQG---------SPGK-EGPPGPQGPSGLPGIPGEEGKEG------RDGKPG 1252
Query: 117 DPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPS 159
P + G P P+ G RG FK D G G + S
Sbjct: 1253 PPGEPGKAGEPGLPGPE--GARGPPGFKGHTGDSGAPGPRGES 1293
Score = 30.0 bits (66), Expect = 3.6
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 82 VRGPLWGLGVSGLIGIPA-EGREGSVQTGISRGVQGDPKDELDLVAVGHPHPQGPGERGS 140
VRG G G +G+P +G G G G P ++ PHP+ PGE+G
Sbjct: 814 VRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGLP----GTTSLFTPHPRMPGEQGP 869
Query: 141 TVFK-DVGVD--------PGTLGSQSPS 159
K D G+ PG LG Q P+
Sbjct: 870 KGEKGDPGLPGEPGLQGRPGELGPQGPT 897
Score = 29.3 bits (64), Expect = 6.1
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 79 PRRVRGPLWGLGVSGLIGIPAE-GREGSVQTGISRGVQGDPKDELDLVAVGHPHPQG--- 134
P+ +GP G +G G P E G G+ S+G G P L G P G
Sbjct: 1316 PQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKG 1375
Query: 135 -------PGERGSTVFKDVGVDPGTLGSQSP 158
PG+ G FK DPG G + P
Sbjct: 1376 VPGKEGVPGKPGEPGFKGERGDPGIKGDKGP 1406
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 34.7 bits (78), Expect = 0.14
Identities = 45/164 (27%), Positives = 56/164 (34%), Gaps = 12/164 (7%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPE-GAGLG 59
+G A P G P + G P G++ + G G G VP G G
Sbjct: 845 VGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGL----AGSPGPHGPNGVPGLKGGRG 900
Query: 60 AQPPPHLQRPQVQTNVL--LSPRRVRGPLWGLGVSGLIGIPA----EGREGSVQTGISRG 113
Q PP + P GP LG G G P G G V G
Sbjct: 901 TQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAG 960
Query: 114 VQGDPKDELDLVAVGHPHPQG-PGERGSTVFKDVGVDPGTLGSQ 156
G P D+ D G P P G PG G+T + + PG G +
Sbjct: 961 PPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGER 1004
Score = 31.6 bits (70), Expect = 1.2
Identities = 48/170 (28%), Positives = 61/170 (35%), Gaps = 16/170 (9%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G P G+S G P GE + A G P G + G P G
Sbjct: 543 GERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGN-PGVQGPEGKLGPLGAPGEDGRPGP 601
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIP----AEGREGSV-------QTGI 110
P R Q + L P+ G G +G G+P A G++G V G+
Sbjct: 602 PGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGL 661
Query: 111 S--RGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSP 158
+ RG QG P G P P PGE G + V DPG +G P
Sbjct: 662 AGERGEQGPPGPTGFQGLPGPPGP--PGEGGKPGDQGVPGDPGAVGPLGP 709
Score = 30.4 bits (67), Expect = 2.7
Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 77 LSPRRVRGPLWGLGVSGLIGIPAE----GREGSVQTGISRGVQGDPKDELDLVAVGHPHP 132
L PR RG G G+ G+P E G G S G G P D G P
Sbjct: 707 LGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGD------TGPPGL 760
Query: 133 QG-PGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVVAHHIAQGLP 179
QG PGERG + PG G + +G + + A+GLP
Sbjct: 761 QGMPGERG------IAGTPGPKGDR--GGIGEKGAEGTAGNDGARGLP 800
Score = 30.0 bits (66), Expect = 3.6
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 14/77 (18%)
Query: 83 RGPLWGLGVSGLIGIP----AEGREGSVQTGISRGVQGDPKDELDLVAVGHPHPQG-PGE 137
RG G G G+P A+G G V + +G QGDP G P G PG
Sbjct: 521 RGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDP---------GRPGEPGLPGA 571
Query: 138 RGSTVFKDVGVDPGTLG 154
RG T V G LG
Sbjct: 572 RGLTGNPGVQGPEGKLG 588
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 34.3 bits (77), Expect = 0.19
Identities = 60/239 (25%), Positives = 86/239 (35%), Gaps = 46/239 (19%)
Query: 8 GASHFPPIGGAPVAVGEEAVFTAAGAAA-RWPLHTGGAEQF----GEEAVPEGAGLGAQP 62
G P IGG+P G + G + P G + G++ VP GL P
Sbjct: 1287 GFQGMPGIGGSPGITGSKGDMGPPGVPGFQGPKGLPGLQGIKGDQGDQGVPGAKGLPGPP 1346
Query: 63 -----------PPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGIS 111
P L P+ L + + GP GV+GL+GIP GI
Sbjct: 1347 GPPGPYDIIKGEPGLPGPEGPPG-LKGLQGLPGPKGQQGVTGLVGIPG-------PPGIP 1398
Query: 112 RGVQGDPKDELDLVAVGHPHPQG-PGERGSTVFKDVGVDPGTLGSQSPSQLGHGAHDIVV 170
G G P + ++ G P+G PG G PG++G + HG +V
Sbjct: 1399 -GFDGAPGQKGEMGPAGPTGPRGFPGPPGPDGL------PGSMGPPGTPSVDHG---FLV 1448
Query: 171 AHHIAQGLPQACRVLGMQPVCVMQDHSL--GCQVTYLGNPDPHPGQELGPADERLVVFA 227
H +Q + P C L G + Y+ + GQ+LG A L F+
Sbjct: 1449 TRH-SQTID--------DPQCPSGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFS 1498
Score = 31.2 bits (69), Expect = 1.6
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGR---EGSVQTGISRGVQGDP 118
PP P + + LS + +G GVSG G+P + + +G T +G +G+P
Sbjct: 207 PPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEP 266
Query: 119 KDELDLVAVGH------PHPQGP-------GERGSTVFKDVGVDPGTLGSQSP 158
+ + VG P P+G GE+GS F PG +G Q P
Sbjct: 267 GFQ-GMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGP 318
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.9 bits (76), Expect = 0.25
Identities = 40/142 (28%), Positives = 50/142 (35%), Gaps = 24/142 (16%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G A P GA+ P G P G + P GG G+ P G +
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMRGM----------PGSPGGPGSDGKPGPPGSQGESGR 562
Query: 62 P-PPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGISRGVQGDPKD 120
P PP P+ Q V+ P G G G P + E G G QG P
Sbjct: 563 PGPPGPSGPRGQPGVMGFP----------GPKGNDGAPGKNGERGGPGG--PGPQGPPGK 610
Query: 121 ELDLVAVGHPHPQGP-GERGST 141
+ G P P GP G++G T
Sbjct: 611 NGETGPQGPPGPTGPGGDKGDT 632
Score = 32.3 bits (72), Expect = 0.72
Identities = 48/167 (28%), Positives = 61/167 (36%), Gaps = 18/167 (10%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVP-EGAGLGA 60
G P G + P + G G E AAG P G A G + +P E GLG+
Sbjct: 681 GERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP----PGPPGAAGTPGLQGMPGERGGLGS 736
Query: 61 QPPPHLQRPQVQTNVLLSPRR--VRGPLWGLGVSGLIGIPAEGREGSVQ--TGIS--RGV 114
P + P + RGP +G G G P + EG GI+ RG
Sbjct: 737 PGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGS 796
Query: 115 QGDPKDELDLVAVGHP-------HPQGPGERGSTVFKDVGVDPGTLG 154
G+ + G P P G GERG+ K G PG G
Sbjct: 797 PGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAG 843
Score = 30.4 bits (67), Expect = 2.7
Identities = 42/165 (25%), Positives = 52/165 (31%), Gaps = 28/165 (16%)
Query: 2 GGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQ 61
G + P+G + P G+ A G + G G A G P G
Sbjct: 1065 GESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGE----RGAAGIKGHRGFPGNPGAPGS 1120
Query: 62 PPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAE-GREGSVQTGISRGVQGDPKD 120
P P Q+ + + PR GP G G G P G G RG +G P
Sbjct: 1121 PGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSP-- 1178
Query: 121 ELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQSPSQLGHGA 165
GHP GP PG G+ P G GA
Sbjct: 1179 -------GHPGQPGP--------------PGPPGAPGPCCGGVGA 1202
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 33.9 bits (76), Expect = 0.25
Identities = 44/165 (26%), Positives = 58/165 (35%), Gaps = 32/165 (19%)
Query: 6 PSGASHFPPIGGAPVAVGEEAVFTAAGAAAR--WPLHTGGAEQFGEEAVPEGAGLGAQPP 63
P GA+ P I G G + +AG A + P H G A G+ G G +P
Sbjct: 296 PKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPG 355
Query: 64 PHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPA-EGREGSVQTGISRGVQGDPKDEL 122
P G+ G G P EG G +G+ G D+
Sbjct: 356 PQ------------------------GLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQG 391
Query: 123 DLVAVGHPHPQG----PGERGSTVFKDVGVDPGTLGSQ-SPSQLG 162
+ VG P PQG GE+G PG G + SP + G
Sbjct: 392 ERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTG 436
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 33.5 bits (75), Expect = 0.32
Identities = 44/165 (26%), Positives = 60/165 (36%), Gaps = 29/165 (17%)
Query: 1 MGGATPSGASHFPPIGGAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGL-- 58
+G A PSG P G P GE H G A G + P G+
Sbjct: 357 LGEAGPSGEPGVPGDAGMPGERGEAG-------------HRGSAGALGPQGPPGAPGVRG 403
Query: 59 -----GAQPPPHLQRPQVQTNVL--LSPRRVRGPLWGLGVSGLIGIPAEGREGSVQTGIS 111
G+ P L PQ + P GP G++G G+P G +G +
Sbjct: 404 FQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLP--GDKGELGPSGL 461
Query: 112 RGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQ 156
G +G+ +L G QGP G++ + V PG LG Q
Sbjct: 462 VGPKGESGSRGEL---GPKGTQGP--NGTSGVQGVPGPPGPLGLQ 501
Score = 30.4 bits (67), Expect = 2.7
Identities = 47/171 (27%), Positives = 57/171 (33%), Gaps = 38/171 (22%)
Query: 8 GASHFPPIGGAPVAVGEEAV---------------FTAAGAAARWPLHTGGAEQFGEEAV 52
G P I G P G+EA A R PL G + G
Sbjct: 502 GVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGP 561
Query: 53 PEGAGL-------GAQPPPHLQRPQVQTNVLLSPRRVRGPLWGLGVSGLIGIPAEGREGS 105
P G GA+ PP + P + L RG G G G +G EG
Sbjct: 562 PGPPGPPGSIGHPGARGPPGYRGPTGE----LGDPGPRGNQGDRGDKGAAGAGLDGPEGD 617
Query: 106 VQTGISRGVQGDPKDELDLVAVGHPHPQGPGERGSTVFKDVGVDPGTLGSQ 156
+GV G KD D A G P P PG+ G PG +G+Q
Sbjct: 618 QGPQGPQGVPGTSKDGQD-GAPGEPGP--PGDPGL---------PGAIGAQ 656
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 33.5 bits (75), Expect = 0.32
Identities = 46/161 (28%), Positives = 60/161 (37%), Gaps = 29/161 (18%)
Query: 17 GAPVAVGEEAVFTAAGAAARWPLHTGGAEQFGEEAVPEGAGLGAQPPPH----LQRPQVQ 72
G+P GE+ AG+ G + GE+ P GL P P L + +
Sbjct: 533 GSPGEKGEKGETGQAGSP-------GEKGEAGEKGNPGAEGLQGVPGPKGEAGLDGAKGE 585
Query: 73 TNVLLSPRRVRGPLWGLGVSGLIGIPA-EGREGSVQTGISRGVQGDPKDELDLVAVGHPH 131
+ RGPL G G IG+P G +G RG +GDP A G P
Sbjct: 586 KG-FQGEKGDRGPLGLPGTPGPIGVPGPAGPKG------ERGSKGDPGMTGPTGAAGLPG 638
Query: 132 PQGP----------GERGSTVFKDVGVDPGTLGSQSPSQLG 162
GP G++GS K D G G +P LG
Sbjct: 639 LHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLG 679
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,322,348
Number of Sequences: 37866
Number of extensions: 1114654
Number of successful extensions: 3388
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 3212
Number of HSP's gapped (non-prelim): 256
length of query: 377
length of database: 18,247,518
effective HSP length: 104
effective length of query: 273
effective length of database: 14,309,454
effective search space: 3906480942
effective search space used: 3906480942
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.