Guide to the Human Genome
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Name: C1QA Sequence: fasta or formatted (245aa) NCBI GI: 7705753
Description:

complement component 1, q subcomponent, A chain precursor

Referenced in:

Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         10           1
 C cysteine            2.0          5           1
 D aspartate           3.7          9           1
 E glutamate           4.5         11           2
 F phenylalanine       4.1         10           1
 G glycine            16.7         41           2
 H histidine           0.8          2           1
 I isoleucine          5.3         13           1
 K lysine              4.9         12           2
 L leucine             6.1         15           1
 M methionine          1.6          4           1
 N asparagine          2.9          7           1
 P proline             9.0         22           2
 Q glutamine           6.1         15           2
 R arginine            6.1         15           2
 S serine              7.3         18           3
 T threonine           3.7          9           2
 V valine              7.3         18           2
 W tryptophan          1.2          3           1
 Y tyrosine            2.4          6           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   complement component 1, q subcomponent, A chain precu... 
C1QB                  0.292   complement component 1, q subcomponent, B chain prec...
C1QC                  0.255   complement component 1, q subcomponent, C chain prec...
C1QC                  0.255   complement component 1, q subcomponent, C chain pre...
C1QTNF2               0.216   C1q and tumor necrosis factor related protein 2 [Hom...
C1QTNF7               0.205   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.205   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.205   C1q and tumor necrosis factor related protein 7 iso...
COL8A2                0.201   collagen, type VIII, alpha 2 
OTOL1                 0.201   hypothetical protein LOC131149 
C1QL1                 0.193   complement component 1, q subcomponent-like 1 
ADIPOQ                0.185   adiponectin precursor 
COL10A1               0.181   type X collagen alpha 1 precursor 
C1QL4                 0.181   complement component 1, q subcomponent-like 4 
C1QTNF5               0.181   C1q and tumor necrosis factor related protein 5 prec...
C1QTNF9               0.179   C1q and tumor necrosis factor related protein 9 [Hom...
C1QL3                 0.175   complement component 1, q subcomponent-like 3 
C1QTNF9B              0.166   C1q and tumor necrosis factor related protein 9B [Ho...
COL8A1                0.164   alpha 1 type VIII collagen precursor 
COL8A1                0.164   alpha 1 type VIII collagen precursor 
C1QL2                 0.158   complement component 1, q subcomponent-like 2 [Homo...
COL11A1               0.127   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.127   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.127   alpha 1 type XI collagen isoform A preproprotein [Ho...
C1QTNF1               0.127   C1q and tumor necrosis factor related protein 1 isof...
COL4A5                0.127   type IV collagen alpha 5 isoform 1 precursor 
C1QTNF1               0.127   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               0.125   C1q and tumor necrosis factor related protein 1 [Hom...
COL7A1                0.123   alpha 1 type VII collagen precursor 
COL4A5                0.123   type IV collagen alpha 5 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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