Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100127899 Sequence: fasta or formatted (369aa) NCBI GI: 239749207
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {191aa} PREDICTED: hypothetical protein
alt prot {377aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         36           3
 C cysteine            1.4          5           1
 D aspartate           3.3         12           1
 E glutamate           5.4         20           2
 F phenylalanine       2.2          8           1
 G glycine            13.3         49           2
 H histidine           7.0         26           2
 I isoleucine          2.2          8           1
 K lysine              1.6          6           1
 L leucine             7.6         28           2
 M methionine          0.8          3           1
 N asparagine          1.1          4           1
 P proline            10.0         37           3
 Q glutamine           7.3         27           2
 R arginine            6.2         23           2
 S serine              4.9         18           1
 T threonine           4.3         16           2
 V valine              9.5         35           2
 W tryptophan          1.4          5           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134498          1.000   PREDICTED: hypothetical protein 
LOC100127899          0.929   PREDICTED: hypothetical protein 
LOC100127899          0.512   PREDICTED: hypothetical protein 
COL2A1                0.016   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.016   collagen, type II, alpha 1 isoform 2 precursor [Hom...
CCAR1                 0.016   cell-cycle and apoptosis regulatory protein 1 
MEF2D                 0.013   myocyte enhancer factor 2D 
ASPSCR1               0.013   alveolar soft part sarcoma chromosome region, candid...
LOC338758             0.012   PREDICTED: hypothetical protein 
LOC338758             0.012   PREDICTED: hypothetical protein 
LOC338758             0.012   PREDICTED: hypothetical protein 
ARID1A                0.012   AT rich interactive domain 1A isoform a 
ARID1A                0.012   AT rich interactive domain 1A isoform b 
LMTK3                 0.011   lemur tyrosine kinase 3 
KDM6B                 0.011   lysine (K)-specific demethylase 6B 
COL9A2                0.011   alpha 2 type IX collagen 
COL5A3                0.011   collagen, type V, alpha 3 preproprotein 
HOXD12                0.009   homeobox D12 
LOC100128127          0.009   PREDICTED: hypothetical protein 
ITIH5                 0.009   inter-alpha trypsin inhibitor heavy chain precursor...
ITIH5                 0.009   inter-alpha trypsin inhibitor heavy chain precursor...
COL4A2                0.009   alpha 2 type IV collagen preproprotein 
PRCC                  0.009   papillary renal cell carcinoma translocation-associa...
PRCC                  0.009   papillary renal cell carcinoma translocation-associa...
COL15A1               0.009   alpha 1 type XV collagen precursor 
LOC100292217          0.009   PREDICTED: hypothetical protein 
LOC100288033          0.009   PREDICTED: hypothetical protein 
LOC100288033          0.009   PREDICTED: hypothetical protein XP_002343859 
SEC24C                0.009   SEC24-related protein C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press