Guide to the Human Genome
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Name: LOC100127899 Sequence: fasta or formatted (191aa) NCBI GI: 239743287
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {369aa} PREDICTED: hypothetical protein
alt prot {377aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         17           2
 C cysteine            2.1          4           1
 D aspartate           3.1          6           1
 E glutamate           5.8         11           2
 F phenylalanine       1.6          3           1
 G glycine            11.5         22           2
 H histidine           8.9         17           2
 I isoleucine          2.6          5           1
 K lysine              2.1          4           1
 L leucine             7.9         15           1
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline             7.9         15           1
 Q glutamine           7.9         15           2
 R arginine            6.8         13           1
 S serine              4.2          8           1
 T threonine           3.7          7           1
 V valine              9.4         18           2
 W tryptophan          2.1          4           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127899          1.000   PREDICTED: hypothetical protein 
LOC100127899          1.000   PREDICTED: hypothetical protein 
LOC100134498          1.000   PREDICTED: hypothetical protein 
LOC100293375          0.016   PREDICTED: hypothetical protein 
EEF1D                 0.013   eukaryotic translation elongation factor 1 delta is...
CD2                   0.010   CD2 molecule 
DGCR14                0.010   DiGeorge syndrome critical region protein 14 
LOC100128949          0.008   PREDICTED: hypothetical protein 
LOC100128949          0.008   PREDICTED: hypothetical protein 
LOC100128949          0.008   PREDICTED: hypothetical protein 
GFRA4                 0.008   GDNF family receptor alpha 4 isoform b precursor [Ho...
TLR9                  0.008   toll-like receptor 9 isoform A precursor 
SART1                 0.008   squamous cell carcinoma antigen recognized by T cell...
C14orf43              0.008   hypothetical protein LOC91748 
TCEB3CL               0.008   transcription elongation factor B polypeptide 3C-li...
TCEB3C                0.008   transcription elongation factor B polypeptide 3C [H...
C14orf43              0.008   hypothetical protein LOC91748 
SAMD4B                0.008   sterile alpha motif domain containing 4B 
LOC100289917          0.008   PREDICTED: hypothetical protein XP_002347096 
TMEM88B               0.008   PREDICTED: hypothetical protein LOC643965 
LOC100289547          0.008   PREDICTED: hypothetical protein XP_002342981 
TMEM88B               0.008   PREDICTED: hypothetical protein LOC643965 
MYCN                  0.008   v-myc myelocytomatosis viral related oncogene, neuro...
KMO                   0.008   kynurenine 3-monooxygenase 
CLEC4G                0.008   C-type lectin domain family 4, member G 
LOC100292196          0.005   PREDICTED: hypothetical protein 
LOC728503             0.005   PREDICTED: hypothetical protein 
LOC728503             0.005   PREDICTED: hypothetical protein 
LOC728503             0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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