Guide to the Human Genome
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Name: FIGNL2 Sequence: fasta or formatted (653aa) NCBI GI: 116292174
Description:

fidgetin-like 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.9        104           3
 C cysteine            1.7         11           1
 D aspartate           3.2         21           2
 E glutamate           5.4         35           3
 F phenylalanine       1.8         12           1
 G glycine            13.9         91           5
 H histidine           1.2          8           1
 I isoleucine          0.5          3           1
 K lysine              3.2         21           1
 L leucine            11.8         77           2
 M methionine          0.5          3           1
 N asparagine          1.2          8           1
 P proline            13.9         91           5
 Q glutamine           3.5         23           2
 R arginine            4.9         32           3
 S serine              5.2         34           2
 T threonine           3.1         20           2
 V valine              3.7         24           2
 W tryptophan          1.1          7           1
 Y tyrosine            4.3         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fidgetin-like 2 
FIGN                  0.324   fidgetin 
FIGNL1                0.165   fidgetin-like 1 
FIGNL1                0.165   fidgetin-like 1 
SPAST                 0.117   spastin isoform 2 
SPAST                 0.117   spastin isoform 1 
KATNA1                0.081   katanin p60 subunit A 1 
KATNAL1               0.081   katanin p60 subunit A-like 1 
KATNAL1               0.081   katanin p60 subunit A-like 1 
VPS4B                 0.077   vacuolar protein sorting factor 4B 
VPS4A                 0.075   vacuolar protein sorting factor 4A 
KATNAL2               0.067   katanin p60 subunit A-like 2 
SPATA5                0.066   spermatogenesis associated 5 
ATAD1                 0.062   ATPase family, AAA domain containing 1 
VCP                   0.059   valosin-containing protein 
ATAD2B                0.053   ATPase family, AAA domain containing 2B 
PSMC3                 0.053   proteasome 26S ATPase subunit 3 
PSMC2                 0.053   proteasome 26S ATPase subunit 2 
SPATA5L1              0.053   spermatogenesis associated 5-like 1 
ATAD2                 0.052   ATPase family, AAA domain containing 2 
PSMC1                 0.052   proteasome 26S ATPase subunit 1 
NVL                   0.050   nuclear VCP-like isoform 2 
NVL                   0.050   nuclear VCP-like isoform 1 
PSMC5                 0.050   proteasome 26S ATPase subunit 5 
PSMC6                 0.050   proteasome 26S ATPase subunit 6 
PEX6                  0.047   peroxisomal biogenesis factor 6 
YME1L1                0.045   YME1-like 1 isoform 1 
YME1L1                0.045   YME1-like 1 isoform 3 
LOC652826             0.042   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.042   proteasome 26S ATPase subunit 4 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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