Guide to the Human Genome
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Name: KATNAL2 Sequence: fasta or formatted (466aa) NCBI GI: 226371754
Description:

katanin p60 subunit A-like 2

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         33           2
 C cysteine            0.9          4           1
 D aspartate           5.4         25           1
 E glutamate           7.5         35           2
 F phenylalanine       3.2         15           2
 G glycine             4.9         23           2
 H histidine           2.4         11           1
 I isoleucine          4.9         23           2
 K lysine              6.4         30           2
 L leucine            11.2         52           3
 M methionine          2.4         11           2
 N asparagine          4.3         20           2
 P proline             4.9         23           2
 Q glutamine           3.9         18           2
 R arginine            7.1         33           2
 S serine              8.6         40           2
 T threonine           5.6         26           2
 V valine              5.4         25           2
 W tryptophan          1.3          6           1
 Y tyrosine            2.8         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   katanin p60 subunit A-like 2 
KATNA1                0.278   katanin p60 subunit A 1 
KATNAL1               0.269   katanin p60 subunit A-like 1 
KATNAL1               0.269   katanin p60 subunit A-like 1 
VPS4B                 0.243   vacuolar protein sorting factor 4B 
VPS4A                 0.242   vacuolar protein sorting factor 4A 
FIGNL1                0.220   fidgetin-like 1 
FIGNL1                0.220   fidgetin-like 1 
SPAST                 0.211   spastin isoform 2 
SPAST                 0.211   spastin isoform 1 
FIGN                  0.172   fidgetin 
ATAD1                 0.162   ATPase family, AAA domain containing 1 
VCP                   0.150   valosin-containing protein 
SPATA5                0.150   spermatogenesis associated 5 
PSMC6                 0.144   proteasome 26S ATPase subunit 6 
PSMC5                 0.133   proteasome 26S ATPase subunit 5 
PEX6                  0.133   peroxisomal biogenesis factor 6 
PSMC1                 0.131   proteasome 26S ATPase subunit 1 
PSMC3                 0.130   proteasome 26S ATPase subunit 3 
LOC652826             0.124   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.124   proteasome 26S ATPase subunit 4 isoform 2 
PSMC4                 0.124   proteasome 26S ATPase subunit 4 isoform 1 
ATAD2B                0.120   ATPase family, AAA domain containing 2B 
NVL                   0.118   nuclear VCP-like isoform 2 
NVL                   0.118   nuclear VCP-like isoform 1 
ATAD2                 0.115   ATPase family, AAA domain containing 2 
AFG3L2                0.114   AFG3 ATPase family gene 3-like 2 
PEX1                  0.113   peroxin1 
SPG7                  0.113   spastic paraplegia 7 isoform 1 
PSMC2                 0.111   proteasome 26S ATPase subunit 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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