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Search of human proteins with 23312371
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 455 e-128
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 372 e-104
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 135 3e-32
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 108 2e-24
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 99 2e-21
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 99 3e-21
gi|148743793 osteoprotegerin precursor [Homo sapiens] 92 4e-19
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 73 2e-13
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 73 2e-13
gi|4505393 nerve growth factor receptor precursor [Homo sapiens] 64 9e-11
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 64 9e-11
gi|23510423 tumor necrosis factor receptor superfamily, member 6... 63 2e-10
gi|23510421 tumor necrosis factor receptor superfamily, member 6... 63 2e-10
gi|4507583 tumor necrosis factor receptor superfamily, member 6 ... 63 2e-10
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 63 2e-10
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 54 7e-08
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 50 1e-06
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 48 7e-06
gi|5730095 tumor necrosis factor receptor superfamily, member 9 ... 48 7e-06
gi|23200023 tumor necrosis factor receptor superfamily, member 2... 48 7e-06
gi|23200021 tumor necrosis factor receptor superfamily, member 2... 48 7e-06
gi|89142745 tumor necrosis factor receptor superfamily, member 2... 48 7e-06
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 48 7e-06
gi|38569482 hypothetical protein LOC57535 [Homo sapiens] 43 2e-04
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 42 4e-04
gi|209571555 von Willebrand factor D and EGF domains [Homo sapiens] 40 0.001
gi|23238194 tumor necrosis factor receptor superfamily, member 1... 40 0.001
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens] 40 0.001
gi|110735443 delta-like 1 [Homo sapiens] 39 0.002
gi|4759246 tumor necrosis factor receptor superfamily, member 18... 39 0.003
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 455 bits (1171), Expect = e-128
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL 60
MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
Sbjct: 1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL 60
Query: 61 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV 120
PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
Sbjct: 61 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV 120
Query: 121 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESPGGDPHH 180
LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESPGGDPHH
Sbjct: 121 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESPGGDPHH 180
Query: 181 LRDPVCHPLGAGLYQKGGQEANQ 203
LRDPVCHPLGAGLYQKGGQEANQ
Sbjct: 181 LRDPVCHPLGAGLYQKGGQEANQ 203
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 372 bits (956), Expect = e-104
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL 60
MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
Sbjct: 1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL 60
Query: 61 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV 120
PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
Sbjct: 61 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV 120
Query: 121 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT 165
LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT
Sbjct: 121 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT 165
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 26 CREKQYLINSQC--CSL---CQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQH 80
C E + + C C L C PG + T ++T C PC F + + CH
Sbjct: 105 CEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPW 164
Query: 81 KYCDPNLGLRVQQKGTSETDTIC 103
C+ L VQQ GT++TD +C
Sbjct: 165 TSCETK-DLVVQQAGTNKTDVVC 186
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 135 bits (339), Expect = 3e-32
Identities = 65/162 (40%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 4 LPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCG 63
L L C L L A+ PP EK Y +CC+ C+PG+ + S CT +++ CLPCG
Sbjct: 14 LLLLCALLARLQVALQIAPPCTS-EKHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCG 72
Query: 64 ESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHR 123
E+LD+WN E C HK CD L G S T C C G+H S+ CE C +
Sbjct: 73 PDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYH-WSQDCECCRRNT 131
Query: 124 SCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT 165
C+PG G + DT+C+PC G+FS+ S+ +KC PWT
Sbjct: 132 ECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWT 173
Score = 36.2 bits (82), Expect = 0.020
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 36 QCC---SLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQ 92
+CC + C PG +T C PC F D ++ C C LG RV+
Sbjct: 125 ECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCT-FLGKRVE 183
Query: 93 QKGTSETDTICT 104
GT ++D +C+
Sbjct: 184 HHGTEKSDAVCS 195
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 108 bits (271), Expect = 2e-24
Identities = 58/155 (37%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 16 TAVHPEPPTACREKQYLINS--QCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNR 73
T PEP + CR ++Y + CCS C PGQ CT+ ++T C C +S + WN
Sbjct: 30 TPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNW 89
Query: 74 ETHCHQ-HKYCDPNLGLRVQ-QKGTSETDTICTCEEGWHCT---SEACESCVLHRSCSPG 128
C C + +V+ Q T E + ICTC GW+C E C C R C PG
Sbjct: 90 VPECLSCGSRCSSD---QVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPG 146
Query: 129 FGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHP 163
FGV + T SD +C+PC G FSN +S+ + C P
Sbjct: 147 FGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRP 181
Score = 36.6 bits (83), Expect = 0.015
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 41 CQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETD 100
C+PG + TE ++ C PC F +T + C H+ C+ V G + D
Sbjct: 143 CRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNV-----VAIPGNASMD 197
Query: 101 TICT 104
+CT
Sbjct: 198 AVCT 201
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 99.0 bits (245), Expect = 2e-21
Identities = 67/192 (34%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 5 PLQCVLWGCLLTAVHPE--PPTA-----CR--EKQYLINSQ--CCSLCQPGQKLVSDCTE 53
PL L+G LL A P+ PP A CR EK+Y CCS C PG + + C+
Sbjct: 16 PLVLGLFG-LLAASQPQAVPPYASENQTCRDQEKEYYEPQHRICCSRCPPGTYVSAKCSR 74
Query: 54 FTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTS 113
+T C C E+ + + WN T C + CDP +GL TS+ T C C+ G C +
Sbjct: 75 IRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKRKTQCRCQPGMFCAA 134
Query: 114 EA--CESCVLHRSCSPGFGVK-QIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTR---- 166
A C C L C PG + + G + C PC G F N SS +C P TR
Sbjct: 135 WALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQ 194
Query: 167 -----SPGSAES 173
+PG+A+S
Sbjct: 195 GLVEAAPGTAQS 206
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 98.6 bits (244), Expect = 3e-21
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 25 ACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCD 84
+C+E +Y + S+CC C PG ++ C E T T C PC ++ N + C Q + CD
Sbjct: 41 SCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCD 100
Query: 85 PNLGLRVQQKGTSETDTICTCEEGWHC---TSEACESCVLHRSCSPGFGVKQIATGVSDT 141
P +GLR + + + +C C G C + C +C + + SPG V++ T DT
Sbjct: 101 PAMGLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDT 160
Query: 142 ICEPCPVGFFSNVSSAFEKCHPWTR 166
+C+ CP G FS + E+C T+
Sbjct: 161 LCQNCPPGTFS-PNGTLEECQHQTK 184
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 91.7 bits (226), Expect = 4e-19
Identities = 50/146 (34%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 22 PPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHK 81
PP + + C C PG L CT +T C PC + + D+W+ C
Sbjct: 25 PPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDEC---L 81
Query: 82 YCDPNLG--LRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVS 139
YC P V+Q+ + +C C+EG + E C+ HRSC PGFGV Q T
Sbjct: 82 YCSPVCKELQYVKQECNRTHNRVCECKEGRYLE---IEFCLKHRSCPPGFGVVQAGTPER 138
Query: 140 DTICEPCPVGFFSNVSSAFEKCHPWT 165
+T+C+ CP GFFSN +S+ C T
Sbjct: 139 NTVCKRCPDGFFSNETSSKAPCRKHT 164
Score = 40.4 bits (93), Expect = 0.001
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 26 CREKQYLINSQCCS--LCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYC 83
C+E +YL C C PG +V T T C C + F + + + C +H C
Sbjct: 107 CKEGRYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNC 166
Query: 84 DPNLGLRVQQKGTSETDTICT 104
GL + QKG + D IC+
Sbjct: 167 SV-FGLLLTQKGNATHDNICS 186
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 72.8 bits (177), Expect = 2e-13
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
C+ C PG + C + T C PC + WN C +YC+ G R ++
Sbjct: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERC---RYCNVLCGEREEEARAC 105
Query: 98 ET--DTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS 155
+ C C G+ + C + H SC PG GV T +T C+PCP G FS S
Sbjct: 106 HATHNRACRCRTGFFAHAGFC---LEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS 162
Query: 156 SAFEKCHP 163
S+ E+C P
Sbjct: 163 SSSEQCQP 170
Score = 47.8 bits (112), Expect = 7e-06
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 17 AVHPEPPTACREKQ-YLINSQCC---SLCQPGQKLVSDCTEFTETECLPCGESEFLDTWN 72
A H ACR + + ++ C + C PG +++ T T+C PC F + +
Sbjct: 104 ACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSS 163
Query: 73 RETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCT-----SEACESCVLHRSCSP 127
C H+ C LGL + G+S DT+CT G+ + +E CE V+
Sbjct: 164 SSEQCQPHRNCTA-LGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQ 222
Query: 128 GFGVKQI 134
+K++
Sbjct: 223 DISIKRL 229
Score = 28.5 bits (62), Expect = 4.1
Identities = 16/62 (25%), Positives = 23/62 (37%)
Query: 125 CSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESPGGDPHHLRDP 184
C PG V++ S T C PCP ++ + E+C G E H +
Sbjct: 52 CPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNR 111
Query: 185 VC 186
C
Sbjct: 112 AC 113
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 72.8 bits (177), Expect = 2e-13
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
C+ C PG + C + T C PC + WN C +YC+ G R ++
Sbjct: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERC---RYCNVLCGEREEEARAC 105
Query: 98 ET--DTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS 155
+ C C G+ + C + H SC PG GV T +T C+PCP G FS S
Sbjct: 106 HATHNRACRCRTGFFAHAGFC---LEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS 162
Query: 156 SAFEKCHP 163
S+ E+C P
Sbjct: 163 SSSEQCQP 170
Score = 47.8 bits (112), Expect = 7e-06
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 17 AVHPEPPTACREKQ-YLINSQCC---SLCQPGQKLVSDCTEFTETECLPCGESEFLDTWN 72
A H ACR + + ++ C + C PG +++ T T+C PC F + +
Sbjct: 104 ACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSS 163
Query: 73 RETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCT-----SEACESCVLHRSCSP 127
C H+ C LGL + G+S DT+CT G+ + +E CE V+
Sbjct: 164 SSEQCQPHRNCTA-LGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQ 222
Query: 128 GFGVKQI 134
+K++
Sbjct: 223 DISIKRL 229
Score = 28.5 bits (62), Expect = 4.1
Identities = 16/62 (25%), Positives = 23/62 (37%)
Query: 125 CSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESPGGDPHHLRDP 184
C PG V++ S T C PCP ++ + E+C G E H +
Sbjct: 52 CPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNR 111
Query: 185 VC 186
C
Sbjct: 112 AC 113
>gi|4505393 nerve growth factor receptor precursor [Homo sapiens]
Length = 427
Score = 63.9 bits (154), Expect = 9e-11
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 25 ACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGES-EFLDTWNRETHCHQHKYC 83
AC Y + +CC C G+ + C +T C PC +S F D + C K C
Sbjct: 31 ACPTGLYTHSGECCKACNLGEGVAQPCGA-NQTVCEPCLDSVTFSDVVSATEPC---KPC 86
Query: 84 DPNLGLRVQQKGTSETD-TICTCEEGWHC--TSEACESCVLHRSCSPGFGVKQIATGVSD 140
+GL+ E D +C C G++ T+ CE+C R C G G+ +
Sbjct: 87 TECVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEAC---RVCEAGSGLVFSCQDKQN 143
Query: 141 TICEPCPVGFFSNVSSAFEKCHPWT 165
T+CE CP G +S+ ++ + C P T
Sbjct: 144 TVCEECPDGTYSDEANHVDPCLPCT 168
Score = 37.7 bits (86), Expect = 0.007
Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 105 CEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGF-FSNVSSAFEKCHP 163
C G + S C C ++C+ G GV Q G + T+CEPC FS+V SA E C P
Sbjct: 32 CPTGLYTHSGEC--C---KACNLGEGVAQ-PCGANQTVCEPCLDSVTFSDVVSATEPCKP 85
Query: 164 WTRSPGSAESPGGDPHHLRDPVCHPLGAGLYQ 195
T G +S D VC G YQ
Sbjct: 86 CTECVG-LQSMSAPCVEADDAVCR-CAYGYYQ 115
Score = 30.8 bits (68), Expect = 0.83
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 36 QCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCD 84
+ C +C+ G LV C + T C C + + D N C C+
Sbjct: 123 EACRVCEAGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVCE 171
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 63.9 bits (154), Expect = 9e-11
Identities = 41/140 (29%), Positives = 55/140 (39%), Gaps = 25/140 (17%)
Query: 26 CREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDP 85
C Y N +CC C+PG +VS C+ T C PCG + D + + C +C+
Sbjct: 31 CVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKP-CKPCTWCNL 89
Query: 86 NLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEP 145
G +Q T+ DT+C C G S PG C P
Sbjct: 90 RSGSERKQLCTATQDTVCRCRAGTQPLD----------SYKPGVD------------CAP 127
Query: 146 CPVGFFSNVSSAFEKCHPWT 165
CP G FS + + C PWT
Sbjct: 128 CPPGHFSPGDN--QACKPWT 145
>gi|23510423 tumor necrosis factor receptor superfamily, member 6
isoform 3 precursor [Homo sapiens]
Length = 220
Score = 62.8 bits (151), Expect = 2e-10
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 37 CCSLCQPGQKLVSDCT-EFTETECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQK 94
C C PG++ DCT E +C+PC E E+ D + + C + + CD GL V+
Sbjct: 59 CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
Query: 95 GTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICE 144
T +T C C+ + C S CE C C G+ + T S+T C+
Sbjct: 119 CTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE--HGIIKECTLTSNTKCK 166
>gi|23510421 tumor necrosis factor receptor superfamily, member 6
isoform 2 precursor [Homo sapiens]
Length = 314
Score = 62.8 bits (151), Expect = 2e-10
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 37 CCSLCQPGQKLVSDCT-EFTETECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQK 94
C C PG++ DCT E +C+PC E E+ D + + C + + CD GL V+
Sbjct: 59 CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
Query: 95 GTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICE 144
T +T C C+ + C S CE C C G+ + T S+T C+
Sbjct: 119 CTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE--HGIIKECTLTSNTKCK 166
>gi|4507583 tumor necrosis factor receptor superfamily, member 6
isoform 1 precursor [Homo sapiens]
Length = 335
Score = 62.8 bits (151), Expect = 2e-10
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 37 CCSLCQPGQKLVSDCT-EFTETECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQK 94
C C PG++ DCT E +C+PC E E+ D + + C + + CD GL V+
Sbjct: 59 CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
Query: 95 GTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICE 144
T +T C C+ + C S CE C C G+ + T S+T C+
Sbjct: 119 CTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE--HGIIKECTLTSNTKCK 166
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 62.8 bits (151), Expect = 2e-10
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 8 CVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTE-TECLPCGES 65
CVL G L+ P +C E+ Y + CC +C+PG LV DC + + +C PC
Sbjct: 10 CVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAAQCDPCIPG 68
Query: 66 -EFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESC 119
F + HC ++C N GL V + T + C C GW C + C C
Sbjct: 69 VSFSPDHHTRPHCESCRHC--NSGLLV-RNCTITANAECACRNGWQCRDKECTEC 120
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 54.3 bits (129), Expect = 7e-08
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQK--G 95
C C G + CT + C C F N CH C + +K
Sbjct: 67 CDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHD---CSQPCPWPMIEKLPC 123
Query: 96 TSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS 155
+ TD CTC G ++ +C H C G+GV++ T D C+ C G FS+V
Sbjct: 124 AALTDRECTCPPGMF---QSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP 180
Query: 156 SAFEKCHPWT 165
S+ KC +T
Sbjct: 181 SSVMKCKAYT 190
Score = 32.7 bits (73), Expect = 0.22
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 26 CREKQYLINSQCC--SLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYC 83
C + N+ C ++C G + TE + C C F D + C + C
Sbjct: 133 CPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDC 192
Query: 84 DPNLGLRVQQKGTSETDTIC 103
+ L V + GT ETD +C
Sbjct: 193 -LSQNLVVIKPGTKETDNVC 211
>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
sapiens]
Length = 455
Score = 50.4 bits (119), Expect = 1e-06
Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 8/134 (5%)
Query: 24 TACREKQYLI---NSQCCSLCQPGQKLVSDCT-EFTETECLPCGESEFLDTWNRETHCHQ 79
+ C + +Y+ NS CC+ C G L +DC +T+C C F + N HC
Sbjct: 42 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLS 101
Query: 80 HKYCDPNLGLRVQQKGTSETDTICTCEEGW--HCTSEACESCVLHRSCSPGFGVKQIATG 137
C +G T + DT+C C + H SE C C G V
Sbjct: 102 CSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNG-TVHLSCQE 160
Query: 138 VSDTICEPCPVGFF 151
+T+C C GFF
Sbjct: 161 KQNTVC-TCHAGFF 173
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 20 PEPPTACRE---------KQYLINSQCCSLCQP--GQKLVSDCTEFTETECLPCGESEFL 68
P T CRE + +L + CS C+ GQ +S CT +T C C ++++
Sbjct: 75 PGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVC-GCRKNQYR 133
Query: 69 DTWNRET-HCHQHKYC-DPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESC 119
W+ C C + + L Q+K +T+CTC G+ C SC
Sbjct: 134 HYWSENLFQCFNCSLCLNGTVHLSCQEK----QNTVCTCHAGFFLRENECVSC 182
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 47.8 bits (112), Expect = 7e-06
Identities = 40/147 (27%), Positives = 55/147 (37%), Gaps = 14/147 (9%)
Query: 36 QCCSLCQPGQKLVSDCTEFTETECLP-CGESEFLDTWNRETHCHQHKYCDPNLGLRVQQK 94
+CC C G C + T+C C +LD +R T C D L +
Sbjct: 43 RCCYRCPMGLFPTQQCPQ-RPTDCRKQCEPDYYLDEADRCTACVTCSRDD----LVEKTP 97
Query: 95 GTSETDTICTCEEGWHCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFF 151
+ +C C G C++ A C C H C G VK T +T+CEP G
Sbjct: 98 CAWNSSRVCECRPGMFCSTSAVNSCARCFFHSVCPAGMIVKFPGTAQKNTVCEPASPG-V 156
Query: 152 SNVSSAFEKCHPWTRSPGSAESPGGDP 178
S ++ E C + P S P P
Sbjct: 157 SPACASPENC----KEPSSGTIPQAKP 179
>gi|5730095 tumor necrosis factor receptor superfamily, member 9
precursor [Homo sapiens]
Length = 255
Score = 47.8 bits (112), Expect = 7e-06
Identities = 40/156 (25%), Positives = 55/156 (35%), Gaps = 18/156 (11%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
CS C G + C C PC + F + T C + C R + TS
Sbjct: 28 CSNCPAG----TFCDNNRNQICSPCPPNSFSSAGGQRT-CDICRQCKGVFRTRKECSSTS 82
Query: 98 ETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSA 157
+ C C G+HC C C + C G ++ C+ C G F++
Sbjct: 83 NAE--CDCTPGFHCLGAGCSMC--EQDCKQG-------QELTKKGCKDCCFGTFNDQKRG 131
Query: 158 FEKCHPWTRSPGSAESPGGDPHHLRDPVCHPLGAGL 193
C PWT +S + RD VC P A L
Sbjct: 132 I--CRPWTNCSLDGKSVLVNGTKERDVVCGPSPADL 165
>gi|23200023 tumor necrosis factor receptor superfamily, member 25
isoform 3 precursor [Homo sapiens]
Length = 380
Score = 47.8 bits (112), Expect = 7e-06
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
Query: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
Query: 145 PCPVGFFSN 153
C GF+ +
Sbjct: 164 TCLPGFYEH 172
>gi|23200021 tumor necrosis factor receptor superfamily, member 25
isoform 1 precursor [Homo sapiens]
Length = 426
Score = 47.8 bits (112), Expect = 7e-06
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
Query: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
Query: 145 PCPVGFFSN 153
C GF+ +
Sbjct: 164 TCLPGFYEH 172
>gi|89142745 tumor necrosis factor receptor superfamily, member 25
isoform 12 precursor [Homo sapiens]
Length = 181
Score = 47.8 bits (112), Expect = 7e-06
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
Query: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
Query: 145 PCPVGFFSN 153
C GF+ +
Sbjct: 164 TCLPGFYEH 172
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 47.8 bits (112), Expect = 7e-06
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
Query: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
Query: 145 PCPVGFFSN 153
C GF+ +
Sbjct: 164 TCLPGFYEH 172
>gi|38569482 hypothetical protein LOC57535 [Homo sapiens]
Length = 1013
Score = 43.1 bits (100), Expect = 2e-04
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
C C+PG + F C C + + + ET CHQ CDP+ + +KG+S
Sbjct: 275 CFPCKPGTYADKQGSSF----CKLCPANSYSN--KGETSCHQ---CDPD---KYSEKGSS 322
Query: 98 ETDTICTC-EEGWHCTSEAC----ESCVLHRSCSPGF-------GVKQIATGVSDTICEP 145
+ C ++ + T AC E+ ++++ P VK A+GV T C P
Sbjct: 323 SCNVRPACTDKDYFYTHTACDANGETQLMYKWAKPKICSEDLEGAVKLPASGVK-THCPP 381
Query: 146 CPVGFFSNVSSAFEKCHPWTRSPGS 170
C GFF +S + C + S GS
Sbjct: 382 CNPGFFKTNNSTCQPCPYGSYSNGS 406
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 42.0 bits (97), Expect = 4e-04
Identities = 34/116 (29%), Positives = 40/116 (34%), Gaps = 45/116 (38%)
Query: 36 QCCSLCQPGQKLVSDCTEFTE----TECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRV 91
Q C C PG K E + C+PC C+QH CDPN G
Sbjct: 682 QFCESCAPGYK-----REMPQGGPYASCVPCT-------------CNQHGTCDPNTG--- 720
Query: 92 QQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCP 147
IC C H +CE C+ PGF A D C+PCP
Sbjct: 721 ----------ICVCSH--HTEGPSCERCL------PGFYGNPFAGQADD--CQPCP 756
Score = 31.2 bits (69), Expect = 0.63
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 25/85 (29%)
Query: 102 ICTCEEGWHCTSEACESCV----------------------LHRSCSPGFGVKQIATGVS 139
IC+C G+ T + CESC H +C P G+ +
Sbjct: 672 ICSCPTGY--TGQFCESCAPGYKREMPQGGPYASCVPCTCNQHGTCDPNTGICVCSHHTE 729
Query: 140 DTICEPCPVGFFSN-VSSAFEKCHP 163
CE C GF+ N + + C P
Sbjct: 730 GPSCERCLPGFYGNPFAGQADDCQP 754
Score = 28.9 bits (63), Expect = 3.1
Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 116 CESCVLHR------SCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPG 169
C SC H C P G GV+ C+ C +GFF + + C SP
Sbjct: 914 CRSCKCHPLGSQEDQCHPKTGQCTCRPGVTGQACDRCQLGFF---GFSIKGCRACRCSPL 970
Query: 170 SAESPGGDPHHLRDPVCHP 188
A S H VC P
Sbjct: 971 GAAS--AQCHENGTCVCRP 987
>gi|209571555 von Willebrand factor D and EGF domains [Homo sapiens]
Length = 1590
Score = 40.0 bits (92), Expect = 0.001
Identities = 47/188 (25%), Positives = 65/188 (34%), Gaps = 48/188 (25%)
Query: 23 PTACREKQYLINSQC-CSLCQPGQKLVSDCTEFTETECLP------CGESEFLDTWNRET 75
P C+ K I S C +LC P K C + +CLP C E
Sbjct: 1311 PNICKCKPGYIGSNCQTALCDPDCKNHGKCIKPNICQCLPGHGGATCDEEHCNPPCQHGG 1370
Query: 76 HCHQHKYCDPNLGL------------RVQQKGTSETDTICTCEEGWH---CTSEACES-C 119
C C G + G T IC C+ GW+ C++ C+ C
Sbjct: 1371 TCLAGNLCTCPYGFVGPRCETMVCNRHCENGGQCLTPDICQCKPGWYGPTCSTALCDPVC 1430
Query: 120 VLHRSCSPGFGVKQIATGVSDTICEPCPVGFF-SNVSSAFEKCHPWTRSPGSAESPGGDP 178
+ SC+ C CP GFF + +AF CHP ++ G
Sbjct: 1431 LNGGSCN------------KPNTC-LCPNGFFGEHCQNAF--CHPPCKNGG--------- 1466
Query: 179 HHLRDPVC 186
H +R+ VC
Sbjct: 1467 HCMRNNVC 1474
>gi|23238194 tumor necrosis factor receptor superfamily, member 18
isoform 2 precursor [Homo sapiens]
Length = 255
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 21/126 (16%)
Query: 62 CGESEFLDTWNRETHC---HQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACES 118
CG L + C H + C G ++ SE D +C E +HC C +
Sbjct: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPG----EECCSEWDCMCVQPE-FHCGDPCCTT 88
Query: 119 CVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT----------RSP 168
C H C PG GV+ C C G FS C PWT ++P
Sbjct: 89 C-RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCKPWTDCCWRCRRRPKTP 145
Query: 169 GSAESP 174
+A SP
Sbjct: 146 EAASSP 151
>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
Length = 1044
Score = 40.0 bits (92), Expect = 0.001
Identities = 38/136 (27%), Positives = 47/136 (34%), Gaps = 16/136 (11%)
Query: 26 CREKQYLINSQCCS------LCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQ 79
C E N CS C PG + D E LPC + F + C
Sbjct: 489 CNESCTCANGAACSPIDGSCSCTPGW--LGDTCE------LPCPDGTFGLNCSEHCDCSH 540
Query: 80 HKYCDPNLGLRVQQKGTSETDTICTCEEG-WHCTSEACESCVLHRSCSPGFGVKQIATGV 138
CDP G G + TC G W SC SCSP G + A G
Sbjct: 541 ADGCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGF 600
Query: 139 SDTICEP-CPVGFFSN 153
+C+ CP GF+ +
Sbjct: 601 RGPLCQRICPPGFYGH 616
Score = 35.0 bits (79), Expect = 0.044
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 97 SETDTICTCEEGWH---CT------------SEACESCVLHRSCSPGFGVKQIATGVSDT 141
S D CTC+EGW CT +E+C +C +CSP G G
Sbjct: 459 SPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESC-TCANGAACSPIDGSCSCTPGWLGD 517
Query: 142 ICE-PCPVGFF 151
CE PCP G F
Sbjct: 518 TCELPCPDGTF 528
Score = 28.5 bits (62), Expect = 4.1
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 16/74 (21%)
Query: 103 CTCEEGW--HCTSEAC------ESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNV 154
CTC+ GW H +E+C + C L +C G I G + C GF V
Sbjct: 379 CTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCT------CAPGFMGEV 432
Query: 155 SSAFEKCHPWTRSP 168
+ C T P
Sbjct: 433 CAV--SCAAGTYGP 444
>gi|110735443 delta-like 1 [Homo sapiens]
Length = 723
Score = 39.3 bits (90), Expect = 0.002
Identities = 35/131 (26%), Positives = 45/131 (34%), Gaps = 14/131 (10%)
Query: 40 LCQPGQKLVSDCTEFTETECLP-CGESEFLDTWNRETHCH---QHKYCDPNLGLRVQQKG 95
+C PG K TE CLP C E E C Q +YCD + G
Sbjct: 211 VCNPGWK----GPYCTEPICLPGCDEQHGFCDKPGECKCRVGWQGRYCDECIRYPGCLHG 266
Query: 96 TSETDTICTCEEGW---HCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFS 152
T + C C+EGW C + C H+ C G G C P G +
Sbjct: 267 TCQQPWQCNCQEGWGGLFCNQD-LNYCTHHKPCKNGATCTNTGQGSYTCSCRPGYTG--A 323
Query: 153 NVSSAFEKCHP 163
++C P
Sbjct: 324 TCELGIDECDP 334
>gi|4759246 tumor necrosis factor receptor superfamily, member 18
isoform 1 precursor [Homo sapiens]
Length = 241
Score = 38.9 bits (89), Expect = 0.003
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 62 CGESEFLDTWNRETHC---HQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACES 118
CG L + C H + C G ++ SE D +C E +HC C +
Sbjct: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPG----EECCSEWDCMCVQPE-FHCGDPCCTT 88
Query: 119 CVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT 165
C H C PG GV+ C C G FS C PWT
Sbjct: 89 C-RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCKPWT 132
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,653,748
Number of Sequences: 37866
Number of extensions: 559452
Number of successful extensions: 1705
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1513
Number of HSP's gapped (non-prelim): 230
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.