BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|23238197 tumor necrosis factor receptor superfamily, member 18 isoform 3 precursor [Homo sapiens] (234 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|23238197 tumor necrosis factor receptor superfamily, member 1... 520 e-148 gi|4759246 tumor necrosis factor receptor superfamily, member 18... 512 e-145 gi|23238194 tumor necrosis factor receptor superfamily, member 1... 317 7e-87 gi|5730095 tumor necrosis factor receptor superfamily, member 9 ... 68 8e-12 gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 63 2e-10 gi|14790170 tumor necrosis factor receptor superfamily, member 6... 54 2e-07 gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 54 2e-07 gi|4507565 tumor necrosis factor receptor superfamily, member 11... 52 3e-07 gi|148743793 osteoprotegerin precursor [Homo sapiens] 50 1e-06 gi|7657039 tumor necrosis factor receptor superfamily, member 21... 50 1e-06 gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 46 2e-05 gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 45 7e-05 gi|4505039 lymphotoxin beta receptor [Homo sapiens] 44 1e-04 gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 39 0.004 gi|66346695 fibrillin 2 precursor [Homo sapiens] 37 0.011 gi|239756792 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015 gi|239751312 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015 gi|239745809 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015 gi|119703755 laminin, beta 2 precursor [Homo sapiens] 36 0.033 gi|54400749 keratin associated protein 5-1 [Homo sapiens] 36 0.033 gi|122937343 platelet endothelial aggregation receptor 1 [Homo s... 35 0.042 gi|60593038 keratin associated protein 5-4 [Homo sapiens] 35 0.042 gi|23200041 tumor necrosis factor receptor superfamily, member 1... 35 0.055 gi|29725609 epidermal growth factor receptor isoform a precursor... 34 0.095 gi|41327736 epidermal growth factor receptor isoform d precursor... 34 0.095 gi|41327734 epidermal growth factor receptor isoform c precursor... 34 0.095 gi|41327732 epidermal growth factor receptor isoform b precursor... 34 0.095 gi|65301164 very low density lipoprotein receptor isoform b [Hom... 34 0.12 gi|65301167 very low density lipoprotein receptor isoform a [Hom... 34 0.12 gi|11641231 ectodysplasin A receptor precursor [Homo sapiens] 34 0.12 >gi|23238197 tumor necrosis factor receptor superfamily, member 18 isoform 3 precursor [Homo sapiens] Length = 234 Score = 520 bits (1340), Expect = e-148 Identities = 234/234 (100%), Positives = 234/234 (100%) Query: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD Sbjct: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60 Query: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF Sbjct: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120 Query: 121 SGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPGSPPAEPLGWLTVVLLAVAACVLLL 180 SGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPGSPPAEPLGWLTVVLLAVAACVLLL Sbjct: 121 SGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPGSPPAEPLGWLTVVLLAVAACVLLL 180 Query: 181 TSAQLGLHIWQLRKTQLLLEVPPSTEDARSCQFPEEERGERSAEEKGRLGDLWV 234 TSAQLGLHIWQLRKTQLLLEVPPSTEDARSCQFPEEERGERSAEEKGRLGDLWV Sbjct: 181 TSAQLGLHIWQLRKTQLLLEVPPSTEDARSCQFPEEERGERSAEEKGRLGDLWV 234 >gi|4759246 tumor necrosis factor receptor superfamily, member 18 isoform 1 precursor [Homo sapiens] Length = 241 Score = 512 bits (1318), Expect = e-145 Identities = 233/241 (96%), Positives = 234/241 (97%), Gaps = 7/241 (2%) Query: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD Sbjct: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60 Query: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF Sbjct: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120 Query: 121 SGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPGSPPAEPLGWLTVVLLAVAACVLLL 180 SGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPGSPPAEPLGWLTVVLLAVAACVLLL Sbjct: 121 SGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPGSPPAEPLGWLTVVLLAVAACVLLL 180 Query: 181 TSAQLGLHIWQL-------RKTQLLLEVPPSTEDARSCQFPEEERGERSAEEKGRLGDLW 233 TSAQLGLHIWQL R+TQLLLEVPPSTEDARSCQFPEEERGERSAEEKGRLGDLW Sbjct: 181 TSAQLGLHIWQLRSQCMWPRETQLLLEVPPSTEDARSCQFPEEERGERSAEEKGRLGDLW 240 Query: 234 V 234 V Sbjct: 241 V 241 >gi|23238194 tumor necrosis factor receptor superfamily, member 18 isoform 2 precursor [Homo sapiens] Length = 255 Score = 317 bits (811), Expect = 7e-87 Identities = 134/134 (100%), Positives = 134/134 (100%) Query: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD Sbjct: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60 Query: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF Sbjct: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120 Query: 121 SGGHEGHCKPWTDC 134 SGGHEGHCKPWTDC Sbjct: 121 SGGHEGHCKPWTDC 134 >gi|5730095 tumor necrosis factor receptor superfamily, member 9 precursor [Homo sapiens] Length = 255 Score = 67.8 bits (164), Expect = 8e-12 Identities = 61/199 (30%), Positives = 81/199 (40%), Gaps = 41/199 (20%) Query: 54 TTRCCRDYPG-----EECCSEWDCMC-VQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFS 107 T CR G +EC S + C P FHC C+ C C GQ + +G Sbjct: 61 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQD-CKQGQELTKKG--- 116 Query: 108 FGFQCIDCASGTFSGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPG----------- 156 C DC GTF+ G C+PWT+C+ G + G K + VC P Sbjct: 117 ----CKDCCFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSV 172 Query: 157 SPPA---EPLGWLTVV--LLAVAACVLLLTSAQLGLH---IWQLRKTQLLLEVPP----- 203 +PPA EP ++ LA+ + LL L L + + RK L + P Sbjct: 173 TPPAPAREPGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPV 232 Query: 204 ---STEDARSCQFPEEERG 219 ED SC+FPEEE G Sbjct: 233 QTTQEEDGCSCRFPEEEEG 251 >gi|4507579 tumor necrosis factor receptor superfamily, member 4 precursor [Homo sapiens] Length = 277 Score = 62.8 bits (151), Expect = 2e-10 Identities = 40/125 (32%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 42 GTGTDARCCRVHTTRCCRDYPG--EECCSEWDCM-CVQPEFHCGDP---CCTTCRHHPCP 95 G G +RC R T C PG + S C C G CT + C Sbjct: 49 GNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCR 108 Query: 96 PGQGVQSQGKFSFGFQCIDCASGTFSGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVP 155 G Q + G C C G FS G CKPWT+CT G T+ P + + +A+C Sbjct: 109 CRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASNSSDAICED 168 Query: 156 GSPPA 160 PPA Sbjct: 169 RDPPA 173 Score = 32.7 bits (73), Expect = 0.28 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 74 CVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGH-CKPWT 132 CV + D CC H C PG G+ S+ S C C G ++ CKP T Sbjct: 31 CVGDTYPSNDRCC-----HECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCT 85 Query: 133 DC 134 C Sbjct: 86 WC 87 >gi|14790170 tumor necrosis factor receptor superfamily, member 6b [Homo sapiens] Length = 300 Score = 53.5 bits (127), Expect = 2e-07 Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 19/110 (17%) Query: 46 DARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGK 105 +AR C R CR G F C H CPPG GV + G Sbjct: 101 EARACHATHNRACRCRTG---------------FFAHAGFCL--EHASCPPGAGVIAPGT 143 Query: 106 FSFGFQCIDCASGTFSGGHEG--HCKPWTDCTQFGFLTVFPGNKTHNAVC 153 S QC C GTFS C+P +CT G PG+ +H+ +C Sbjct: 144 PSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLC 193 >gi|4507585 tumor necrosis factor receptor superfamily, member 6b [Homo sapiens] Length = 300 Score = 53.5 bits (127), Expect = 2e-07 Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 19/110 (17%) Query: 46 DARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGK 105 +AR C R CR G F C H CPPG GV + G Sbjct: 101 EARACHATHNRACRCRTG---------------FFAHAGFCL--EHASCPPGAGVIAPGT 143 Query: 106 FSFGFQCIDCASGTFSGGHEG--HCKPWTDCTQFGFLTVFPGNKTHNAVC 153 S QC C GTFS C+P +CT G PG+ +H+ +C Sbjct: 144 PSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLC 193 >gi|4507565 tumor necrosis factor receptor superfamily, member 11a precursor [Homo sapiens] Length = 616 Score = 52.4 bits (124), Expect = 3e-07 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 8/123 (6%) Query: 72 CMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCK 129 C C +H C R+ C PG G Q + + C C +G FS C+ Sbjct: 112 CACTAG-YHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCR 170 Query: 130 PWTDCTQFGFLTVFPGNKTHNAVCVPG----SPPAEPLGWLT-VVLLAVAACVLLLTSAQ 184 PWT+CT G G + +AVC PP EP +L +++L + A V L+ + Sbjct: 171 PWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAII 230 Query: 185 LGL 187 G+ Sbjct: 231 FGV 233 >gi|148743793 osteoprotegerin precursor [Homo sapiens] Length = 401 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 90 RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSG--GHEGHCKPWTDCTQFGFLTVFPGNK 147 +H CPPG GV G C C G FS + C+ T+C+ FG L GN Sbjct: 120 KHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLLTQKGNA 179 Query: 148 THNAVCVPGSPPAEPLG 164 TH+ +C S + G Sbjct: 180 THDNICSGNSESTQKCG 196 >gi|7657039 tumor necrosis factor receptor superfamily, member 21 precursor [Homo sapiens] Length = 655 Score = 50.4 bits (119), Expect = 1e-06 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 71 DCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HC 128 +C C F C H CP G GV+ +G + +C CA GTFS C Sbjct: 130 ECTCPPGMFQSNATCAP---HTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKC 186 Query: 129 KPWTDCTQFGFLTVFPGNKTHNAVC 153 K +TDC + + PG K + VC Sbjct: 187 KAYTDCLSQNLVVIKPGTKETDNVC 211 >gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] Length = 277 Score = 46.2 bits (108), Expect = 2e-05 Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 11/130 (8%) Query: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPG----EECCSEWDCMCVQPE-FHCGDPCCTT 88 CG L + C H + C G ++ SE D +C E +HC C + Sbjct: 62 CGESEFLDTWNRETHC---HQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACES 118 Query: 89 C-RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGH--CKPWTDCTQFGFLTVFPG 145 C H C PG GV+ C C G FS C PWT C + G Sbjct: 119 CVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAG 178 Query: 146 NKTHNAVCVP 155 + VC P Sbjct: 179 TNKTDVVCGP 188 >gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapiens] Length = 461 Score = 44.7 bits (104), Expect = 7e-05 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 14/113 (12%) Query: 55 TRCCRDYPGEECCSEWD---CMCVQPEFHCG----DPCCTTCRHHPCPPGQGVQSQGKFS 107 +RC D + C+ C C +P ++C + C C PG GV G + Sbjct: 98 SRCSSDQVETQACTREQNRICTC-RPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTET 156 Query: 108 FGFQCIDCASGTFSG--GHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPGSP 158 C CA GTFS C+P C + PGN + +AVC SP Sbjct: 157 SDVVCKPCAPGTFSNTTSSTDICRPHQICN----VVAIPGNASMDAVCTSTSP 205 >gi|4505039 lymphotoxin beta receptor [Homo sapiens] Length = 435 Score = 43.9 bits (102), Expect = 1e-04 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 16/143 (11%) Query: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHP 93 C P ++G A C T+C R PG C + W C E Sbjct: 101 CRPCDPVMGLEEIAPCTSKRKTQC-RCQPGMFCAA-WALECTHCELLSD----------- 147 Query: 94 CPPGQGVQSQGKFSFGFQ-CIDCASGTF--SGGHEGHCKPWTDCTQFGFLTVFPGNKTHN 150 CPPG + + + G C+ C +G F + C+P T C G + PG + Sbjct: 148 CPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQGLVEAAPGTAQSD 207 Query: 151 AVCVPGSPPAEPLGWLTVVLLAV 173 C P P T+++LAV Sbjct: 208 TTCKNPLEPLPPEMSGTMLMLAV 230 >gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] Length = 203 Score = 38.9 bits (89), Expect = 0.004 Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 11/107 (10%) Query: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPG----EECCSEWDCMCVQPE-FHCGDPCCTT 88 CG L + C H + C G ++ SE D +C E +HC C + Sbjct: 62 CGESEFLDTWNRETHC---HQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACES 118 Query: 89 C-RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCKPWT 132 C H C PG GV+ C C G FS C PWT Sbjct: 119 CVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT 165 >gi|66346695 fibrillin 2 precursor [Homo sapiens] Length = 2912 Score = 37.4 bits (85), Expect = 0.011 Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 22/87 (25%) Query: 34 CGPGRLLLGTGTDARCCRVHTTR-----------CCRDYPGEECCSEWDCMCVQPEFHCG 82 C PG L G D R C R C R +PG SE C C P++ G Sbjct: 684 CPPG---LAVGMDGRVCVDTHMRSTCYGGIKKGVCVRPFPGAVTKSE--CCCANPDYGFG 738 Query: 83 DPCCTTCRHHPCPPGQGVQSQGKFSFG 109 +PC PCP + G S G Sbjct: 739 EPC------QPCPAKNSAEFHGLCSSG 759 Score = 27.7 bits (60), Expect = 8.9 Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 32/92 (34%) Query: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWD---CMCVQPEFHCGDPCC---- 86 C G L GTG R C D E+C +WD C+ P D CC Sbjct: 982 CPEGLTLDGTG-----------RVCLDIRMEQCYLKWDEDECIHPVPGKFRMDACCCAVG 1030 Query: 87 ----TTCRHHP----------CPPGQGVQSQG 104 T C P CP G G ++G Sbjct: 1031 AAWGTECEECPKPGTKEYETLCPRGAGFANRG 1062 >gi|239756792 PREDICTED: hypothetical protein [Homo sapiens] Length = 188 Score = 37.0 bits (84), Expect = 0.015 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 47 ARCCRVH--TTRCCRDYP-GEECCSEWDC--MCVQPEFHCGDPCCTTCRHHPC 94 A CC+ +T CC+ G CC + C C QP CG CC C H C Sbjct: 73 ASCCQPSCCSTPCCQPTCCGSSCCGQTSCGSSCCQPI--CGSSCCQPCCHPTC 123 Score = 28.1 bits (61), Expect = 6.8 Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 10/76 (13%) Query: 49 CCRVHTTRCCRDYPGEECCSEWDC--MCVQPEFHCGDPCC-TTCRHHPC--PPGQGVQSQ 103 CC CC+ CC C C QP C CC +C PC P G Sbjct: 42 CC---VPSCCQPCCHPTCCQNTCCRTTCCQPT--CVASCCQPSCCSTPCCQPTCCGSSCC 96 Query: 104 GKFSFGFQCIDCASGT 119 G+ S G C G+ Sbjct: 97 GQTSCGSSCCQPICGS 112 >gi|239751312 PREDICTED: hypothetical protein [Homo sapiens] Length = 188 Score = 37.0 bits (84), Expect = 0.015 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 47 ARCCRVH--TTRCCRDYP-GEECCSEWDC--MCVQPEFHCGDPCCTTCRHHPC 94 A CC+ +T CC+ G CC + C C QP CG CC C H C Sbjct: 73 ASCCQPSCCSTPCCQPTCCGSSCCGQTSCGSSCCQPI--CGSSCCQPCCHPTC 123 Score = 28.1 bits (61), Expect = 6.8 Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 10/76 (13%) Query: 49 CCRVHTTRCCRDYPGEECCSEWDC--MCVQPEFHCGDPCC-TTCRHHPC--PPGQGVQSQ 103 CC CC+ CC C C QP C CC +C PC P G Sbjct: 42 CC---VPSCCQPCCHPTCCQNTCCRTTCCQPT--CVASCCQPSCCSTPCCQPTCCGSSCC 96 Query: 104 GKFSFGFQCIDCASGT 119 G+ S G C G+ Sbjct: 97 GQTSCGSSCCQPICGS 112 >gi|239745809 PREDICTED: hypothetical protein [Homo sapiens] Length = 188 Score = 37.0 bits (84), Expect = 0.015 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 47 ARCCRVH--TTRCCRDYP-GEECCSEWDC--MCVQPEFHCGDPCCTTCRHHPC 94 A CC+ +T CC+ G CC + C C QP CG CC C H C Sbjct: 73 ASCCQPSCCSTPCCQPTCCGSSCCGQTSCGSSCCQPI--CGSSCCQPCCHPTC 123 Score = 28.1 bits (61), Expect = 6.8 Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 10/76 (13%) Query: 49 CCRVHTTRCCRDYPGEECCSEWDC--MCVQPEFHCGDPCC-TTCRHHPC--PPGQGVQSQ 103 CC CC+ CC C C QP C CC +C PC P G Sbjct: 42 CC---VPSCCQPCCHPTCCQNTCCRTTCCQPT--CVASCCQPSCCSTPCCQPTCCGSSCC 96 Query: 104 GKFSFGFQCIDCASGT 119 G+ S G C G+ Sbjct: 97 GQTSCGSSCCQPICGS 112 >gi|119703755 laminin, beta 2 precursor [Homo sapiens] Length = 1798 Score = 35.8 bits (81), Expect = 0.033 Identities = 32/94 (34%), Positives = 37/94 (39%), Gaps = 29/94 (30%) Query: 50 CRVHTTRC--CRDYPGEECCSEWDCMCVQPEFHCGDPCCT---TCRHHPCPPGQGVQ--- 101 C HT C CRD+ G E C C+ FH GDP CR PCP G G Q Sbjct: 886 CNTHTGACLGCRDHTGGEHCER----CIAG-FH-GDPRLPYGGQCRPCPCPEGPGSQRHF 939 Query: 102 ----SQGKFS-----------FGFQCIDCASGTF 120 Q ++S G +C CA G F Sbjct: 940 ATSCHQDEYSQQIVCHCRAGYTGLRCEACAPGHF 973 >gi|54400749 keratin associated protein 5-1 [Homo sapiens] Length = 278 Score = 35.8 bits (81), Expect = 0.033 Identities = 27/95 (28%), Positives = 32/95 (33%), Gaps = 5/95 (5%) Query: 5 GAMGAFRALCGLALLCALSLGQ--RPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRDYP 62 G+ G + CG C G GG G G G G G CC + C Sbjct: 168 GSCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSK 227 Query: 63 GEECCSEWDCMCVQP---EFHCGDPCCTTCRHHPC 94 G S C C +P CG CC + PC Sbjct: 228 GGCGSSCSQCSCCKPCCCSSGCGSSCCQSSCCKPC 262 Score = 31.2 bits (69), Expect = 0.80 Identities = 34/118 (28%), Positives = 39/118 (33%), Gaps = 25/118 (21%) Query: 14 CGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWDCM 73 CG + C S G +G GCG G G+G C + CC CC Sbjct: 4 CGCSGGCGSSCGGCGSGCGGCGSGCGGCGSG-----CGGSGSSCCVPV----CC------ 48 Query: 74 CVQPEFHCGDPCC--TTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFS-GGHEGHC 128 C CC TC C G S G C C G S GG +G C Sbjct: 49 -------CKPVCCRVPTCSCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGC 99 Score = 30.4 bits (67), Expect = 1.4 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 11/79 (13%) Query: 14 CGLALLCAL--SLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWD 71 CG+ + C S G GCG + + CC+ CC G CC Sbjct: 208 CGVPVCCCSCSSCGSCAGSKGGCG------SSCSQCSCCK---PCCCSSGCGSSCCQSSC 258 Query: 72 CMCVQPEFHCGDPCCTTCR 90 C + C P C C+ Sbjct: 259 CKPCCSQSSCCVPVCCQCK 277 >gi|122937343 platelet endothelial aggregation receptor 1 [Homo sapiens] Length = 1037 Score = 35.4 bits (80), Expect = 0.042 Identities = 53/210 (25%), Positives = 73/210 (34%), Gaps = 32/210 (15%) Query: 20 CALSLGQR-PTGGPGCGPGRLLLGTGTDARC--CRVHTTRCCRDYPGE-ECCSEW---DC 72 C + G R P+ C PGR RC C+ C G C + W DC Sbjct: 595 CVCAPGFRGPSCQRSCQPGRY------GKRCVPCKCANHSFCHPSNGTCYCLAGWTGPDC 648 Query: 73 MCVQPEFHCGDPCCTTCRHH---PCPPGQGVQSQGKFSFGFQCID-CASGTFSG--GHEG 126 P H G+ C TC+ H C P G G C++ C GTF Sbjct: 649 SQPCPPGHWGENCAQTCQCHHGGTCHPQDGSCICPLGWTGHHCLEGCPLGTFGANCSQPC 708 Query: 127 HCKPWTDC-TQFGFLTVFPGNKTHNAVC----------VPGSPPAEPLGWLTVVLLAVAA 175 C P C + G PG+ A C +P +P A + + + + Sbjct: 709 QCGPGEKCHPETGACVCPPGHS--GAPCRIGIQEPFTVMPTTPVAYNSLGAVIGIAVLGS 766 Query: 176 CVLLLTSAQLGLHIWQLRKTQLLLEVPPST 205 V+ L + +G WQ K L V S+ Sbjct: 767 LVVALVALFIGYRHWQKGKEHHHLAVAYSS 796 >gi|60593038 keratin associated protein 5-4 [Homo sapiens] Length = 288 Score = 35.4 bits (80), Expect = 0.042 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 9/90 (10%) Query: 5 GAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRDYPGE 64 G+ G + C C+ G C P +G + CC+ + CC+ Y Sbjct: 192 GSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKP--CCSSSGCGSSCCQ---SSCCKPY--- 243 Query: 65 ECCSEWDCMCVQPEFHCGDPCCTTCRHHPC 94 CC C CG CC + +PC Sbjct: 244 -CCQSSCCKPCCSSSGCGSSCCQSSCCNPC 272 Score = 28.5 bits (62), Expect = 5.2 Identities = 30/115 (26%), Positives = 38/115 (33%), Gaps = 17/115 (14%) Query: 14 CGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWDCM 73 CG + C G +G GCG G G G+ C C CC + C Sbjct: 4 CGCSGGCGSGCGGCGSGCGGCGSG--CGGCGSGCGGCGSGCGGCGSSCCVPICCCKPVCC 61 Query: 74 CVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGHC 128 CV P C+ C +G S G C+ C GG +G C Sbjct: 62 CV--------PACSCSSCGSCGGSKGGYGSCGGSKG-GCVSC------GGSKGGC 101 >gi|23200041 tumor necrosis factor receptor superfamily, member 14 precursor [Homo sapiens] Length = 283 Score = 35.0 bits (79), Expect = 0.055 Identities = 30/110 (27%), Positives = 39/110 (35%), Gaps = 9/110 (8%) Query: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWD---CMCVQPEFHC----GDPCC 86 C PG + ++C + CS + C C P C GD C Sbjct: 78 CPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVCGC-SPGHFCIVQDGDHCA 136 Query: 87 TTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFS-GGHEGHCKPWTDCT 135 + PGQ VQ G S C +C GTFS G C+ T C+ Sbjct: 137 ACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGTLEECQHQTKCS 186 Score = 29.3 bits (64), Expect = 3.0 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Query: 60 DYP-GEECCSEWDCMCVQPEFH----CGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCID 114 +YP G ECC + P + CG+ T C PCPPG + S QC Sbjct: 46 EYPVGSECCPK-----CSPGYRVKEACGELTGTVCE--PCPPGTYIAHLNGLSKCLQCQM 98 Query: 115 C 115 C Sbjct: 99 C 99 >gi|29725609 epidermal growth factor receptor isoform a precursor [Homo sapiens] Length = 1210 Score = 34.3 bits (77), Expect = 0.095 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 38 RLLLGTGTDARCCRVHTTRCCRDYPGEECCS--EWDCMCVQP---EFHCGDPCCTTCRHH 92 +++ RC + CC + C E DC+ + E C D C ++ Sbjct: 212 KIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYN 271 Query: 93 PCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGHC 128 P V +GK+SFG C+ + G C Sbjct: 272 PTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSC 307 >gi|41327736 epidermal growth factor receptor isoform d precursor [Homo sapiens] Length = 705 Score = 34.3 bits (77), Expect = 0.095 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 38 RLLLGTGTDARCCRVHTTRCCRDYPGEECCS--EWDCMCVQP---EFHCGDPCCTTCRHH 92 +++ RC + CC + C E DC+ + E C D C ++ Sbjct: 212 KIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYN 271 Query: 93 PCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGHC 128 P V +GK+SFG C+ + G C Sbjct: 272 PTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSC 307 >gi|41327734 epidermal growth factor receptor isoform c precursor [Homo sapiens] Length = 405 Score = 34.3 bits (77), Expect = 0.095 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 38 RLLLGTGTDARCCRVHTTRCCRDYPGEECCS--EWDCMCVQP---EFHCGDPCCTTCRHH 92 +++ RC + CC + C E DC+ + E C D C ++ Sbjct: 212 KIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYN 271 Query: 93 PCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGHC 128 P V +GK+SFG C+ + G C Sbjct: 272 PTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSC 307 >gi|41327732 epidermal growth factor receptor isoform b precursor [Homo sapiens] Length = 628 Score = 34.3 bits (77), Expect = 0.095 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 38 RLLLGTGTDARCCRVHTTRCCRDYPGEECCS--EWDCMCVQP---EFHCGDPCCTTCRHH 92 +++ RC + CC + C E DC+ + E C D C ++ Sbjct: 212 KIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYN 271 Query: 93 PCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGHC 128 P V +GK+SFG C+ + G C Sbjct: 272 PTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSC 307 >gi|65301164 very low density lipoprotein receptor isoform b [Homo sapiens] Length = 845 Score = 33.9 bits (76), Expect = 0.12 Identities = 32/109 (29%), Positives = 38/109 (34%), Gaps = 11/109 (10%) Query: 30 GGPGCGPGRLLLGTGTDARCCRVHTTRCCRDYP-----GEECCSEWDCMCVQPEFHCGDP 84 G P C G R CR+H C C E DC + E +CG+ Sbjct: 93 GDPDCEDGSDESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGNI 152 Query: 85 CCT----TCRHHPCPPGQGV-QSQGKFSFGFQCIDCASGTFSGGHEGHC 128 C+ TC C V Q S G +DCA T G HE C Sbjct: 153 TCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPT-CGAHEFQC 200 >gi|65301167 very low density lipoprotein receptor isoform a [Homo sapiens] Length = 873 Score = 33.9 bits (76), Expect = 0.12 Identities = 32/109 (29%), Positives = 38/109 (34%), Gaps = 11/109 (10%) Query: 30 GGPGCGPGRLLLGTGTDARCCRVHTTRCCRDYP-----GEECCSEWDCMCVQPEFHCGDP 84 G P C G R CR+H C C E DC + E +CG+ Sbjct: 93 GDPDCEDGSDESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGNI 152 Query: 85 CCT----TCRHHPCPPGQGV-QSQGKFSFGFQCIDCASGTFSGGHEGHC 128 C+ TC C V Q S G +DCA T G HE C Sbjct: 153 TCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPT-CGAHEFQC 200 >gi|11641231 ectodysplasin A receptor precursor [Homo sapiens] Length = 448 Score = 33.9 bits (76), Expect = 0.12 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 7/79 (8%) Query: 87 TTCRHHPCPP-GQGVQSQGKFSFG-----FQCIDCASGTFSGGHEGHCKPWTDCTQFGFL 140 TT CPP G G + +G + C+ C + FS G C+ DC F Sbjct: 40 TTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRA 99 Query: 141 TVF-PGNKTHNAVCVPGSP 158 TV PG+ ++A C P P Sbjct: 100 TVLTPGDMENDAECGPCLP 118 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.324 0.141 0.501 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,665,213 Number of Sequences: 37866 Number of extensions: 719708 Number of successful extensions: 3001 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 122 Number of HSP's that attempted gapping in prelim test: 2815 Number of HSP's gapped (non-prelim): 289 length of query: 234 length of database: 18,247,518 effective HSP length: 99 effective length of query: 135 effective length of database: 14,498,784 effective search space: 1957335840 effective search space used: 1957335840 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.