Guide to the Human Genome
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Name: KRTAP5-1 Sequence: fasta or formatted (278aa) NCBI GI: 54400749
Description:

keratin associated protein 5-1

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.1          3           1
 C cysteine           30.6         85           3
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine            31.7         88           2
 H histidine           0.0          0           0
 I isoleucine          0.4          1           1
 K lysine              6.1         17           1
 L leucine             0.0          0           0
 M methionine          0.7          2           1
 N asparagine          0.0          0           0
 P proline             3.6         10           1
 Q glutamine           1.4          4           1
 R arginine            0.4          1           1
 S serine             19.8         55           2
 T threonine           0.4          1           1
 V valine              4.0         11           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 5-1 
KRTAP5-4              0.671   keratin associated protein 5-4 
KRTAP5-5              0.486   keratin associated protein 5-5 
KRTAP5-10             0.470   keratin associated protein 5-10 
KRTAP5-3              0.423   keratin associated protein 5-3 
KRTAP5-7              0.414   keratin associated protein 5-7 
KRTAP5-8              0.408   keratin associated protein 5-8 
KRTAP5-2              0.386   keratin associated protein 5-2 
KRTAP5-9              0.361   keratin associated protein 5-9 
KRTAP5-11             0.355   keratin associated protein 5-11 
KRTAP5-6              0.292   keratin associated protein 5-6 
KRTAP10-4             0.174   keratin associated protein 10-4 
LOR                   0.159   loricrin 
KRTAP10-7             0.153   keratin associated protein 10-7 
KRTAP4-9              0.152   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.150   keratin associated protein 4-9 
KRTAP10-6             0.147   keratin associated protein 10-6 
KRTAP4-3              0.144   keratin associated protein 4-3 
KRTAP10-2             0.141   keratin associated protein 10-2 
KRTAP4-8              0.136   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.136   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-12             0.136   keratin associated protein 4-12 
LOC728318             0.132   PREDICTED: hypothetical protein 
LOC728318             0.130   PREDICTED: hypothetical protein 
LOC728318             0.130   PREDICTED: hypothetical protein 
KRTAP4-8              0.129   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.129   PREDICTED: similar to keratin associated protein 4-...
KRTAP10-1             0.129   keratin associated protein 10-1 
KRTAP10-5             0.127   keratin associated protein 10-5 
KRTAP4-9              0.126   PREDICTED: keratin associated protein 4-9 isoform 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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