Guide to the Human Genome
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Name: KRTAP5-4 Sequence: fasta or formatted (288aa) NCBI GI: 60593038
Description:

keratin associated protein 5-4

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.3          1           1
 C cysteine           29.9         86           3
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine            31.2         90           2
 H histidine           0.0          0           0
 I isoleucine          0.7          2           1
 K lysine              6.2         18           1
 L leucine             0.0          0           0
 M methionine          0.3          1           1
 N asparagine          0.3          1           1
 P proline             3.1          9           1
 Q glutamine           2.4          7           1
 R arginine            0.0          0           0
 S serine             21.9         63           3
 T threonine           0.0          0           0
 V valine              2.8          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 5-4 
KRTAP5-1              0.618   keratin associated protein 5-1 
KRTAP5-5              0.568   keratin associated protein 5-5 
KRTAP5-10             0.527   keratin associated protein 5-10 
KRTAP5-3              0.502   keratin associated protein 5-3 
KRTAP5-8              0.421   keratin associated protein 5-8 
KRTAP5-7              0.372   keratin associated protein 5-7 
KRTAP5-2              0.369   keratin associated protein 5-2 
KRTAP5-9              0.349   keratin associated protein 5-9 
KRTAP5-11             0.317   keratin associated protein 5-11 
KRTAP5-6              0.254   keratin associated protein 5-6 
KRTAP10-4             0.178   keratin associated protein 10-4 
KRTAP4-3              0.175   keratin associated protein 4-3 
LOR                   0.169   loricrin 
KRTAP4-12             0.163   keratin associated protein 4-12 
KRTAP4-5              0.160   keratin associated protein 4-5 
KRTAP10-7             0.157   keratin associated protein 10-7 
KRTAP4-8              0.157   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.157   PREDICTED: similar to keratin associated protein 4-...
KRTAP10-6             0.157   keratin associated protein 10-6 
KRTAP4-8              0.156   PREDICTED: keratin associated protein 4-8 
KRTAP4-8              0.154   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.154   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-11             0.154   keratin associated protein 4-11 
KRTAP4-7              0.153   keratin associated protein 4-7 
KRTAP4-7              0.153   PREDICTED: keratin associated protein 4-7 
KRTAP4-8              0.151   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.151   keratin associated protein 4.8 
KRTAP4-4              0.151   keratin associated protein 4.4 
KRTAP4-8              0.150   PREDICTED: keratin associated protein 4-8 isoform 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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