Guide to the Human Genome
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Name: EDAR Sequence: fasta or formatted (448aa) NCBI GI: 11641231
Description:

ectodysplasin A receptor precursor

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         37           2
 C cysteine            4.9         22           2
 D aspartate           4.5         20           1
 E glutamate           8.5         38           2
 F phenylalanine       2.7         12           2
 G glycine             7.1         32           2
 H histidine           2.0          9           1
 I isoleucine          4.0         18           2
 K lysine              5.8         26           2
 L leucine             8.5         38           2
 M methionine          2.7         12           1
 N asparagine          3.1         14           1
 P proline             6.9         31           2
 Q glutamine           2.9         13           1
 R arginine            3.3         15           2
 S serine              9.4         42           2
 T threonine           5.8         26           2
 V valine              5.6         25           2
 W tryptophan          0.7          3           1
 Y tyrosine            3.3         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ectodysplasin A receptor precursor 
TNFRSF19              0.048   tumor necrosis factor receptor superfamily, member 1...
TNFRSF19              0.048   tumor necrosis factor receptor superfamily, member 1...
EDA2R                 0.045   X-linked ectodysplasin receptor 
RELT                  0.035   RELT tumor necrosis factor receptor precursor 
RELT                  0.035   RELT tumor necrosis factor receptor precursor 
TNFRSF1B              0.018   tumor necrosis factor receptor 2 precursor 
TNFRSF9               0.016   tumor necrosis factor receptor superfamily, member 9 ...
TNFRSF25              0.014   tumor necrosis factor receptor superfamily, member 2...
KIAA1324              0.014   hypothetical protein LOC57535 
CD40                  0.011   CD40 antigen isoform 1 precursor 
CD40                  0.011   CD40 antigen isoform 2 precursor 
TNFRSF25              0.011   tumor necrosis factor receptor superfamily, member 2...
TNFRSF4               0.011   tumor necrosis factor receptor superfamily, member 4 ...
LTBR                  0.011   lymphotoxin beta receptor 
SSPO                  0.011   SCO-spondin 
MEGF9                 0.011   multiple EGF-like-domains 9 
TNFRSF6B              0.010   tumor necrosis factor receptor superfamily, member 6...
MUC5AC                0.010   mucin 5AC 
TNFRSF6B              0.010   tumor necrosis factor receptor superfamily, member 6b...
MUC5B                 0.010   mucin 5, subtype B, tracheobronchial 
TNFRSF18              0.010   tumor necrosis factor receptor superfamily, member 18...
TNFRSF18              0.010   tumor necrosis factor receptor superfamily, member 1...
FRAS1                 0.010   Fraser syndrome 1 
CCDC146               0.010   coiled-coil domain containing 146 
NGFR                  0.009   nerve growth factor receptor precursor 
TAS1R1                0.009   sweet taste receptor T1r isoform b 
TAS1R1                0.009   sweet taste receptor T1r isoform c 
TNFRSF25              0.009   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.009   tumor necrosis factor receptor superfamily, member 25...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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