Guide to the Human Genome
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Name: LOC728318 Sequence: fasta or formatted (188aa) NCBI GI: 239745809
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {188aa} PREDICTED: hypothetical protein
alt prot {188aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.5          1           1
 C cysteine           35.6         67           3
 D aspartate           0.0          0           0
 E glutamate           0.5          1           1
 F phenylalanine       0.5          1           1
 G glycine             2.1          4           1
 H histidine           2.1          4           1
 I isoleucine          1.1          2           1
 K lysine              0.5          1           1
 L leucine             0.5          1           1
 M methionine          0.5          1           1
 N asparagine          1.1          2           1
 P proline            11.2         21           1
 Q glutamine           8.0         15           1
 R arginine            3.7          7           1
 S serine             11.7         22           2
 T threonine          16.0         30           2
 V valine              2.1          4           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728318             0.996   PREDICTED: hypothetical protein 
LOC728318             0.996   PREDICTED: hypothetical protein 
KRTAP9-2              0.629   keratin associated protein 9.2 
LOC728341             0.603   PREDICTED: keratin-associated protein 9-2-like 1-li...
LOC732428             0.586   PREDICTED: keratin-associated protein 9-2-like 2-li...
KRTAP9-3              0.555   keratin associated protein 9.3 
KRTAP9-4              0.534   keratin associated protein 9-4 
KRTAP9-9              0.518   keratin associated protein 9-9 
KRTAP9-8              0.508   keratin associated protein 9.8 
KRTAP4-12             0.488   keratin associated protein 4-12 
KRTAP4-8              0.460   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.460   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-9              0.460   keratin associated protein 4-9 
KRTAP4-3              0.460   keratin associated protein 4-3 
KRTAP4-9              0.460   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-8              0.447   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.447   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.436   PREDICTED: keratin associated protein 4-8 
KRTAP4-9              0.427   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-8              0.425   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.425   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-4              0.425   keratin associated protein 4.4 
KRTAP4-11             0.421   keratin associated protein 4-11 
KRTAP4-5              0.399   keratin associated protein 4-5 
KRTAP4-8              0.382   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.382   keratin associated protein 4.8 
KRTAP4-7              0.349   keratin associated protein 4-7 
KRTAP4-7              0.349   PREDICTED: keratin associated protein 4-7 
KRTAP10-9             0.334   keratin associated protein 10-9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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