Guide to the Human Genome
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Name: LOC728318 Sequence: fasta or formatted (188aa) NCBI GI: 239756792
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {188aa} PREDICTED: hypothetical protein
alt mRNA {188aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.5          1           1
 C cysteine           35.6         67           3
 D aspartate           0.0          0           0
 E glutamate           0.5          1           1
 F phenylalanine       0.5          1           1
 G glycine             2.1          4           1
 H histidine           2.1          4           1
 I isoleucine          0.5          1           1
 K lysine              0.5          1           1
 L leucine             0.5          1           1
 M methionine          0.5          1           1
 N asparagine          1.1          2           1
 P proline            11.2         21           1
 Q glutamine           8.0         15           1
 R arginine            3.7          7           1
 S serine             11.7         22           2
 T threonine          16.5         31           2
 V valine              2.1          4           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728318             1.000   PREDICTED: hypothetical protein 
LOC728318             0.996   PREDICTED: hypothetical protein 
KRTAP9-2              0.636   keratin associated protein 9.2 
LOC728341             0.610   PREDICTED: keratin-associated protein 9-2-like 1-li...
LOC732428             0.586   PREDICTED: keratin-associated protein 9-2-like 2-li...
KRTAP9-3              0.562   keratin associated protein 9.3 
KRTAP9-4              0.538   keratin associated protein 9-4 
KRTAP9-9              0.523   keratin associated protein 9-9 
KRTAP9-8              0.514   keratin associated protein 9.8 
KRTAP4-12             0.488   keratin associated protein 4-12 
KRTAP4-8              0.462   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.462   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-9              0.462   keratin associated protein 4-9 
KRTAP4-3              0.462   keratin associated protein 4-3 
KRTAP4-9              0.462   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-8              0.449   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.449   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.436   PREDICTED: keratin associated protein 4-8 
KRTAP4-9              0.430   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-8              0.427   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.427   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-11             0.421   keratin associated protein 4-11 
KRTAP4-4              0.403   keratin associated protein 4.4 
KRTAP4-5              0.401   keratin associated protein 4-5 
KRTAP4-8              0.384   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.384   keratin associated protein 4.8 
KRTAP4-7              0.349   keratin associated protein 4-7 
KRTAP4-7              0.349   PREDICTED: keratin associated protein 4-7 
KRTAP10-9             0.336   keratin associated protein 10-9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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