Guide to the Human Genome
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Name: VWCE Sequence: fasta or formatted (955aa) NCBI GI: 114431244
Description:

von Willebrand factor C and EGF domains

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         63           2
 C cysteine           10.2         97           2
 D aspartate           3.5         33           2
 E glutamate           5.0         48           2
 F phenylalanine       2.4         23           1
 G glycine            10.2         97           3
 H histidine           2.9         28           2
 I isoleucine          1.9         18           1
 K lysine              1.5         14           1
 L leucine             8.1         77           4
 M methionine          1.3         12           2
 N asparagine          2.1         20           2
 P proline            12.5        119           3
 Q glutamine           3.0         29           2
 R arginine            5.5         53           3
 S serine              9.3         89           2
 T threonine           6.8         65           2
 V valine              5.3         51           2
 W tryptophan          1.0         10           1
 Y tyrosine            0.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   von Willebrand factor C and EGF domains 
KCP                   0.110   cysteine rich BMP regulator 2 isoform 1 
KCP                   0.110   cysteine rich BMP regulator 2 isoform 2 
FRAS1                 0.058   Fraser syndrome 1 
CD93                  0.056   CD93 antigen precursor 
NPNT                  0.054   nephronectin 
CRIM1                 0.053   cysteine-rich motor neuron 1 
FBLN1                 0.050   fibulin 1 isoform B precursor 
FBLN1                 0.050   fibulin 1 isoform A precursor 
FBLN1                 0.050   fibulin 1 isoform D 
FBLN1                 0.050   fibulin 1 isoform C precursor 
SCUBE1                0.050   signal peptide, CUB domain, EGF-like 1 
EGFL6                 0.050   epidermal growth factor-like protein 6 precursor [Ho...
FBN1                  0.048   fibrillin 1 precursor 
BMPER                 0.048   BMP-binding endothelial regulator precursor protein ...
EFEMP2                0.047   EGF-containing fibulin-like extracellular matrix pr...
EFEMP1                0.047   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.047   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.047   EGF-containing fibulin-like extracellular matrix prot...
FBN2                  0.046   fibrillin 2 precursor 
SCUBE2                0.046   CEGP1 protein 
FBN3                  0.046   fibrillin 3 precursor 
FBLN5                 0.046   fibulin 5 precursor 
LTBP2                 0.045   latent transforming growth factor beta binding protei...
LTBP4                 0.044   latent transforming growth factor beta binding prot...
LTBP4                 0.044   latent transforming growth factor beta binding prot...
LTBP4                 0.044   latent transforming growth factor beta binding prot...
SCUBE3                0.043   signal peptide, CUB domain, EGF-like 3 
MEGF6                 0.042   EGF-like-domain, multiple 3 
LTBP1                 0.041   latent transforming growth factor beta binding prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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