PCOTH 12346

Name: PCOTH	Sequence: fasta or formatted (116aa)		NCBI GI: 209447093
Description: prostate collagen triple helix isoform 2		Referenced in: Collagen Prostate
Other entries for this name: alt prot [107aa] prostate collagen triple helix isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.6 3 1 C cysteine 0.9 1 1 D aspartate 0.0 0 0 E glutamate 3.4 4 2 F phenylalanine 6.0 7 1 G glycine 13.8 16 1 H histidine 0.0 0 0 I isoleucine 3.4 4 1 K lysine 3.4 4 1 L leucine 10.3 12 2 M methionine 3.4 4 1 N asparagine 1.7 2 1 P proline 23.3 27 1 Q glutamine 0.9 1 1 R arginine 2.6 3 1 S serine 11.2 13 2 T threonine 6.0 7 1 V valine 5.2 6 1 W tryptophan 1.7 2 1 Y tyrosine 0.0 0 0			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 prostate collagen triple helix isoform 2 LOC100293281 0.969 PREDICTED: similar to prostate collagen triple heli... LOC100133696 0.969 PREDICTED: similar to prostate collagen triple heli... LOC100287275 0.969 PREDICTED: hypothetical protein XP_002343272 PCOTH 0.902 prostate collagen triple helix isoform 1 LOC100292975 0.188 PREDICTED: hypothetical protein LOC100290486 0.188 PREDICTED: hypothetical protein XP_002346646 LOC100288116 0.188 PREDICTED: hypothetical protein XP_002342482 UBQLN2 0.147 ubiquilin 2 ESX1 0.134 extraembryonic, spermatogenesis, homeobox 1-like [Ho... COL1A1 0.125 alpha 1 type I collagen preproprotein WDR33 0.125 WD repeat domain 33 isoform 1 COL25A1 0.121 collagen, type XXV, alpha 1 isoform 1 COL25A1 0.121 collagen, type XXV, alpha 1 isoform 2 C1QTNF9B 0.107 C1q and tumor necrosis factor related protein 9B [Ho... C1QTNF9 0.107 C1q and tumor necrosis factor related protein 9 [Hom... LOC402382 0.107 PREDICTED: similar to hCG2040468 FUBP1 0.107 far upstream element-binding protein COL7A1 0.103 alpha 1 type VII collagen precursor COL1A2 0.103 alpha 2 type I collagen COL5A2 0.103 alpha 2 type V collagen preproprotein COL3A1 0.098 collagen type III alpha 1 preproprotein COL2A1 0.098 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.098 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL17A1 0.098 alpha 1 type XVII collagen COL11A1 0.094 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.094 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.094 alpha 1 type XI collagen isoform A preproprotein [Ho... CCBE1 0.094 collagen and calcium binding EGF domains 1 COL27A1 0.094 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.