LOC100133696 20417

Name: LOC100133696	Sequence: fasta or formatted (116aa)		NCBI GI: 239750495
Description: PREDICTED: similar to prostate collagen triple helix		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.6 3 1 C cysteine 0.9 1 1 D aspartate 0.0 0 0 E glutamate 3.4 4 2 F phenylalanine 6.0 7 1 G glycine 13.8 16 1 H histidine 0.0 0 0 I isoleucine 4.3 5 1 K lysine 3.4 4 1 L leucine 9.5 11 2 M methionine 4.3 5 1 N asparagine 1.7 2 1 P proline 24.1 28 2 Q glutamine 0.9 1 1 R arginine 2.6 3 1 S serine 11.2 13 2 T threonine 4.3 5 1 V valine 5.2 6 1 W tryptophan 1.7 2 1 Y tyrosine 0.0 0 0			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to prostate collagen triple heli... LOC100293281 1.000 PREDICTED: similar to prostate collagen triple heli... LOC100287275 1.000 PREDICTED: hypothetical protein XP_002343272 PCOTH 0.964 prostate collagen triple helix isoform 2 PCOTH 0.889 prostate collagen triple helix isoform 1 LOC100292975 0.187 PREDICTED: hypothetical protein LOC100290486 0.187 PREDICTED: hypothetical protein XP_002346646 LOC100288116 0.187 PREDICTED: hypothetical protein XP_002342482 UBQLN2 0.151 ubiquilin 2 ESX1 0.133 extraembryonic, spermatogenesis, homeobox 1-like [Ho... COL1A1 0.124 alpha 1 type I collagen preproprotein WDR33 0.124 WD repeat domain 33 isoform 1 COL25A1 0.120 collagen, type XXV, alpha 1 isoform 1 COL25A1 0.120 collagen, type XXV, alpha 1 isoform 2 C1QTNF9B 0.107 C1q and tumor necrosis factor related protein 9B [Ho... C1QTNF9 0.107 C1q and tumor necrosis factor related protein 9 [Hom... LOC402382 0.107 PREDICTED: similar to hCG2040468 FUBP1 0.107 far upstream element-binding protein COL7A1 0.102 alpha 1 type VII collagen precursor COL1A2 0.102 alpha 2 type I collagen COL5A2 0.102 alpha 2 type V collagen preproprotein COL3A1 0.098 collagen type III alpha 1 preproprotein COL2A1 0.098 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.098 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL17A1 0.098 alpha 1 type XVII collagen COL11A1 0.093 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.093 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.093 alpha 1 type XI collagen isoform A preproprotein [Ho... CCBE1 0.093 collagen and calcium binding EGF domains 1 COL27A1 0.093 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.