Guide to the Human Genome
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Name: LOC100292975 Sequence: fasta or formatted (148aa) NCBI GI: 239753818
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          5           1
 C cysteine            3.4          5           2
 D aspartate           2.0          3           1
 E glutamate           3.4          5           1
 F phenylalanine       5.4          8           2
 G glycine            10.1         15           2
 H histidine           4.7          7           1
 I isoleucine          0.7          1           1
 K lysine              2.0          3           1
 L leucine            12.2         18           2
 M methionine          2.0          3           1
 N asparagine          1.4          2           1
 P proline            16.2         24           1
 Q glutamine           4.1          6           1
 R arginine            3.4          5           1
 S serine             13.5         20           3
 T threonine           4.1          6           1
 V valine              3.4          5           2
 W tryptophan          2.7          4           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290486          1.000   PREDICTED: hypothetical protein XP_002346646 
LOC100288116          1.000   PREDICTED: hypothetical protein XP_002342482 
LOC100293281          0.139   PREDICTED: similar to prostate collagen triple heli...
LOC100133696          0.139   PREDICTED: similar to prostate collagen triple heli...
LOC100287275          0.139   PREDICTED: hypothetical protein XP_002343272 
PCOTH                 0.139   prostate collagen triple helix isoform 2 
PCOTH                 0.139   prostate collagen triple helix isoform 1 
UBQLN2                0.083   ubiquilin 2 
COL1A1                0.073   alpha 1 type I collagen preproprotein 
FUBP1                 0.070   far upstream element-binding protein 
COL18A1               0.066   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.066   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.066   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
WNK4                  0.063   WNK lysine deficient protein kinase 4 
IQSEC2                0.056   IQ motif and Sec7 domain 2 isoform1 
COL5A2                0.056   alpha 2 type V collagen preproprotein 
ESX1                  0.056   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
WDR33                 0.056   WD repeat domain 33 isoform 1 
RGL3                  0.053   ral guanine nucleotide dissociation stimulator-like...
LOC402382             0.053   PREDICTED: similar to hCG2040468 
COL1A2                0.050   alpha 2 type I collagen 
POLR2A                0.050   DNA-directed RNA polymerase II A 
COL10A1               0.050   type X collagen alpha 1 precursor 
ODF1                  0.050   outer dense fiber of sperm tails 1 
COL25A1               0.050   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.050   collagen, type XXV, alpha 1 isoform 2 
COL3A1                0.050   collagen type III alpha 1 preproprotein 
LOC100131880          0.050   PREDICTED: hypothetical protein 
COL17A1               0.050   alpha 1 type XVII collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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