CCBE1 27265

Name: CCBE1	Sequence: fasta or formatted (406aa)		NCBI GI: 39930511
Description: collagen and calcium binding EGF domains 1		Referenced in: Epidermal Growth Factor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 20 2 C cysteine 5.2 21 2 D aspartate 5.9 24 2 E glutamate 6.4 26 2 F phenylalanine 2.5 10 1 G glycine 12.8 52 2 H histidine 2.0 8 1 I isoleucine 3.0 12 1 K lysine 5.7 23 2 L leucine 7.9 32 5 M methionine 2.0 8 1 N asparagine 2.2 9 2 P proline 11.6 47 4 Q glutamine 3.2 13 2 R arginine 7.1 29 2 S serine 5.7 23 2 T threonine 5.4 22 2 V valine 2.2 9 1 W tryptophan 0.2 1 1 Y tyrosine 4.2 17 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen and calcium binding EGF domains 1 COL9A2 0.090 alpha 2 type IX collagen COL4A5 0.089 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.089 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.089 type IV collagen alpha 5 isoform 3 precursor COL27A1 0.089 collagen, type XXVII, alpha 1 COL25A1 0.089 collagen, type XXV, alpha 1 isoform 1 COL25A1 0.089 collagen, type XXV, alpha 1 isoform 2 COL5A2 0.088 alpha 2 type V collagen preproprotein COL4A4 0.087 alpha 4 type IV collagen precursor COL5A3 0.087 collagen, type V, alpha 3 preproprotein COL3A1 0.087 collagen type III alpha 1 preproprotein COL11A1 0.084 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.084 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.084 alpha 1 type XI collagen isoform A preproprotein [Ho... LOC100293055 0.084 PREDICTED: similar to COL22A1 protein COL22A1 0.084 collagen, type XXII, alpha 1 COL11A2 0.084 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.084 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.084 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL4A3 0.084 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.084 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.084 alpha 3 type IV collagen isoform 1 precursor COL10A1 0.084 type X collagen alpha 1 precursor COL23A1 0.083 collagen, type XXIII, alpha 1 COL5A1 0.083 alpha 1 type V collagen preproprotein COL7A1 0.083 alpha 1 type VII collagen precursor COL4A1 0.083 alpha 1 type IV collagen preproprotein COL8A2 0.083 collagen, type VIII, alpha 2 COL17A1 0.083 alpha 1 type XVII collagen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.