Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ESX1 Sequence: fasta or formatted (406aa) NCBI GI: 23592228
Description:

extraembryonic, spermatogenesis, homeobox 1-like

Referenced in:

Homeobox and Related Proteins
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         34           2
 C cysteine            0.5          2           1
 D aspartate           3.2         13           2
 E glutamate           8.1         33           2
 F phenylalanine       2.0          8           2
 G glycine             6.7         27           4
 H histidine           1.7          7           1
 I isoleucine          1.2          5           1
 K lysine              1.7          7           1
 L leucine             6.9         28           2
 M methionine          4.9         20           1
 N asparagine          2.5         10           2
 P proline            23.4         95           2
 Q glutamine           5.2         21           3
 R arginine            6.7         27           4
 S serine              2.7         11           1
 T threonine           4.4         18           2
 V valine              6.7         27           2
 W tryptophan          1.2          5           1
 Y tyrosine            2.0          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   extraembryonic, spermatogenesis, homeobox 1-like [Ho... 
RAX                   0.112   retina and anterior neural fold homeobox 
FMN2                  0.108   formin 2 
RHOXF2                0.108   Rhox homeobox family, member 2 
RHOXF2B               0.107   Rhox homeobox family, member 2B 
RHOXF1                0.099   Rhox homeobox family, member 1 
DIAPH1                0.093   diaphanous 1 isoform 2 
DIAPH1                0.093   diaphanous 1 isoform 1 
RAX2                  0.092   retina and anterior neural fold homeobox 2 
ALX4                  0.088   aristaless-like homeobox 4 
OTP                   0.088   PREDICTED: orthopedia homeobox 
OTP                   0.088   orthopedia homeobox 
CPSF6                 0.086   cleavage and polyadenylation specific factor 6, 68 ...
WBP11                 0.085   WW domain binding protein 11 
ARX                   0.084   aristaless related homeobox 
CRX                   0.084   cone-rod homeobox protein 
PRRX2                 0.083   paired related homeobox 2 
FLJ22184              0.082   PREDICTED: hypothetical protein FLJ22184 
PROP1                 0.080   PROP paired-like homeobox 1 
ALX3                  0.079   aristaless-like homeobox 3 
VSX1                  0.079   visual system homeobox 1 isoform a 
MLL2                  0.078   myeloid/lymphoid or mixed-lineage leukemia 2 
PAX3                  0.078   paired box 3 isoform PAX3i 
PAX3                  0.078   paired box 3 isoform PAX3g 
PAX3                  0.078   paired box 3 isoform PAX3h 
PAX3                  0.078   paired box 3 isoform PAX3e 
PAX3                  0.078   paired box 3 isoform PAX3d 
PAX3                  0.078   paired box 3 isoform PAX3 
SFPQ                  0.077   splicing factor proline/glutamine rich (polypyrimidin...
UNCX                  0.077   UNC homeobox 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press