Guide to the Human Genome
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Name: LOC100287275 Sequence: fasta or formatted (116aa) NCBI GI: 239744792
Description:

PREDICTED: hypothetical protein XP_002343272

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          3           1
 C cysteine            0.9          1           1
 D aspartate           0.0          0           0
 E glutamate           3.4          4           2
 F phenylalanine       6.0          7           1
 G glycine            13.8         16           1
 H histidine           0.0          0           0
 I isoleucine          4.3          5           1
 K lysine              3.4          4           1
 L leucine             9.5         11           2
 M methionine          4.3          5           1
 N asparagine          1.7          2           1
 P proline            24.1         28           2
 Q glutamine           0.9          1           1
 R arginine            2.6          3           1
 S serine             11.2         13           2
 T threonine           4.3          5           1
 V valine              5.2          6           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343272 
LOC100293281          1.000   PREDICTED: similar to prostate collagen triple heli...
LOC100133696          1.000   PREDICTED: similar to prostate collagen triple heli...
PCOTH                 0.964   prostate collagen triple helix isoform 2 
PCOTH                 0.889   prostate collagen triple helix isoform 1 
LOC100292975          0.187   PREDICTED: hypothetical protein 
LOC100290486          0.187   PREDICTED: hypothetical protein XP_002346646 
LOC100288116          0.187   PREDICTED: hypothetical protein XP_002342482 
UBQLN2                0.151   ubiquilin 2 
ESX1                  0.133   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
COL1A1                0.124   alpha 1 type I collagen preproprotein 
WDR33                 0.124   WD repeat domain 33 isoform 1 
COL25A1               0.120   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.120   collagen, type XXV, alpha 1 isoform 2 
C1QTNF9B              0.107   C1q and tumor necrosis factor related protein 9B [Ho...
C1QTNF9               0.107   C1q and tumor necrosis factor related protein 9 [Hom...
LOC402382             0.107   PREDICTED: similar to hCG2040468 
FUBP1                 0.107   far upstream element-binding protein 
COL7A1                0.102   alpha 1 type VII collagen precursor 
COL1A2                0.102   alpha 2 type I collagen 
COL5A2                0.102   alpha 2 type V collagen preproprotein 
COL3A1                0.098   collagen type III alpha 1 preproprotein 
COL2A1                0.098   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.098   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL17A1               0.098   alpha 1 type XVII collagen 
COL11A1               0.093   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.093   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.093   alpha 1 type XI collagen isoform A preproprotein [Ho...
CCBE1                 0.093   collagen and calcium binding EGF domains 1 
COL27A1               0.093   collagen, type XXVII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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