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Search of human proteins with 169213235
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
(308 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 632 0.0
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 632 0.0
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] 285 4e-77
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 78 1e-14
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 78 1e-14
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 76 3e-14
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 75 7e-14
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 66 3e-11
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 66 3e-11
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 66 3e-11
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 65 1e-10
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 65 1e-10
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 65 1e-10
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 65 1e-10
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 65 1e-10
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 64 1e-10
gi|110832843 TBP-associated factor 4 [Homo sapiens] 64 2e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 63 3e-10
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 63 3e-10
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 63 3e-10
gi|48762934 alpha 2 type I collagen [Homo sapiens] 63 3e-10
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 63 3e-10
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 63 3e-10
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 63 3e-10
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 62 5e-10
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 61 1e-09
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 61 1e-09
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 60 2e-09
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 60 2e-09
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 60 2e-09
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 632 bits (1629), Expect = 0.0
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP 60
MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP
Sbjct: 1 MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP 60
Query: 61 LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS
Sbjct: 61 LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
Query: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH
Sbjct: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
Query: 181 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240
GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL
Sbjct: 181 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240
Query: 241 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300
GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP
Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300
Query: 301 SPRSSACL 308
SPRSSACL
Sbjct: 301 SPRSSACL 308
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 632 bits (1629), Expect = 0.0
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP 60
MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP
Sbjct: 1 MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP 60
Query: 61 LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS
Sbjct: 61 LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
Query: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH
Sbjct: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
Query: 181 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240
GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL
Sbjct: 181 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240
Query: 241 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300
GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP
Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300
Query: 301 SPRSSACL 308
SPRSSACL
Sbjct: 301 SPRSSACL 308
>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 285 bits (729), Expect = 4e-77
Identities = 180/318 (56%), Positives = 197/318 (61%), Gaps = 45/318 (14%)
Query: 4 SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----------- 52
+G R LQRTP +A A G+A AA S + PR A+
Sbjct: 18 TGEKRPAQTLQRTPRKHA-----ASRGQAQAAAAALTPSLI---PRAAIRQSQAPDLLLA 69
Query: 53 SAGAPG--SPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
S G G + L +P P G P+++ R A SP + RR
Sbjct: 70 SRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR--------AAGSPTRVQRRPRPLRP 121
Query: 111 AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGA 170
+ +A RLR +L P ++ P ALR + PA A GG R
Sbjct: 122 SRAAPRLRGEEPSLLR-----PQLSRRPRALRRSTRVPA----AGKGG-------DRRAP 165
Query: 171 ECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW 230
VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW
Sbjct: 166 VFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW 225
Query: 231 PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 290
PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP
Sbjct: 226 PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 285
Query: 291 SILESSRLLPSPRSSACL 308
SILESSRLLPSPRSSACL
Sbjct: 286 SILESSRLLPSPRSSACL 303
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 77.8 bits (190), Expect = 1e-14
Identities = 92/289 (31%), Positives = 117/289 (40%), Gaps = 39/289 (13%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRG-AVSAGAPGSPLYR 63
G R G + A + ++G G AGA G K P G A SAGA G+P R
Sbjct: 765 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 824
Query: 64 VSAPPPAPP----PPPPPGGP-SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLR 118
PP P PP G P ++ E+ AG + G +PGP G SG G G
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK-GDAGAPGPQGP----SGAPGPQGPTG 879
Query: 119 CSAAALSAAQRGGP-------ARAQVPPALRTFSPGPASPPRASPGGRPGSE-ARGRSGA 170
+ + +G P A +V P +PGP PP P G+ G + ARG SG
Sbjct: 880 VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP--GPSGKDGPKGARGDSGP 937
Query: 171 ECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHR 229
P GP G G E+ + A GPP P G++G RG V L G +
Sbjct: 938 PGRAGEPGLQGPAGPPG---EKGEPGDDGPSGAEGPPGPQGLAGQ-RGIVGLPGQRGERG 993
Query: 230 WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
+P PS G+ G APG +G GPPG P GP
Sbjct: 994 FPGLPGPSGEPGKQG------------APGASGDRGPPGPVGPPGLTGP 1030
Score = 73.2 bits (178), Expect = 3e-13
Identities = 97/328 (29%), Positives = 120/328 (36%), Gaps = 56/328 (17%)
Query: 6 GPRRLAGLQRTPA---AYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-------- 53
GPR G +P A N I G GA G AG+ + PRG
Sbjct: 390 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 449
Query: 54 -----AGAPGSPLYRVSAPPPAPPPPP-PPGGPSRS-ERPRAGLR--PGAFVSPGPLGRR 104
G PG ++ P P P P G P + E + G R PG GP G R
Sbjct: 450 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER 509
Query: 105 AS-----------CSGRAGSAGRLRCSAAALSAAQRGGPARAQVP--PALR--TFSPGPA 149
+ +G G+ G S A G P R P P R T PG A
Sbjct: 510 GAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 569
Query: 150 SPP-RASPGGRPGSEAR-GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG-P 206
P + P G PG + R G G + AR P G PG G E + + +G P
Sbjct: 570 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE------KGLP 623
Query: 207 PFPGISGMTR--GPVVLSGVNRQHRWPPG-ASPSRSLGEAGGERPARALRRPRAPGRAGG 263
PG+ G+ G +G PPG A P+ GE G P+ P PG G
Sbjct: 624 GAPGLRGLPGKDGETGAAG-------PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE 676
Query: 264 GGPPGG-GIPACSIGPGLARLAALGGLP 290
GG PG G+P + PGL G P
Sbjct: 677 GGKPGDQGVPGEAGAPGLVGPRGERGFP 704
Score = 71.6 bits (174), Expect = 8e-13
Identities = 81/295 (27%), Positives = 103/295 (34%), Gaps = 53/295 (17%)
Query: 17 PAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-------AGAPGSPLYRVSAPPP 69
P A ++G DE+ A GA + + P G + AGAPG ++ + P
Sbjct: 172 PPGLGGNFAAQMAGGFDEK-AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEP 230
Query: 70 APP----------PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--SCSGRAGSAGRL 117
P PP PPG P + G PGP G R G G G
Sbjct: 231 GEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHR 290
Query: 118 RCSAAALSAAQRGGPA-RAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRV 176
+ + G P + + SPGP P R PG R + G +GA
Sbjct: 291 GYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP-RGLPGERGRTGPAGAAGARGNDGQ 349
Query: 177 PLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASP 236
P GPPG G PA GP FPG G +G A P
Sbjct: 350 PGPAGPPGPVG--------------PAGGPGFPGAPG-AKGE---------------AGP 379
Query: 237 SRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 290
+ + G G + P P +PG AG G PG GIP G +A G P
Sbjct: 380 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 434
Score = 65.9 bits (159), Expect = 4e-11
Identities = 82/276 (29%), Positives = 96/276 (34%), Gaps = 37/276 (13%)
Query: 30 GRADEEGAAG----AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRS-- 83
G A E+G G G K PRG G PG+P PP PP PP GG +
Sbjct: 126 GPAGEQGPRGDRGDKGEKGAPGPRGR--DGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQM 183
Query: 84 ----ERPRAGLRPGAFVSP-GPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPA 133
+ G + G P GP+G R G AG+ G + G GP
Sbjct: 184 AGGFDEKAGGAQLGVMQGPMGPMGPRGP-PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR 242
Query: 134 RAQVPPALRTFSPGPASPPRASPGGRPGSE-ARGRSGAECARRVPLHHGPPGASGVGSER 192
PP P +A G PG + ARG G V H G PG G E
Sbjct: 243 GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA 302
Query: 193 DR---KFQLHQTPARGPP-------FPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 242
K + G P PG G T GP +G P A P +G
Sbjct: 303 GAPGVKGESGSPGENGSPGPMGPRGLPGERGRT-GPAGAAGARGNDGQPGPAGPPGPVGP 361
Query: 243 AGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
AGG P APG G GP G P + GP
Sbjct: 362 AGGP------GFPGAPGAKGEAGPTGARGPEGAQGP 391
Score = 62.0 bits (149), Expect = 6e-10
Identities = 98/326 (30%), Positives = 116/326 (35%), Gaps = 70/326 (21%)
Query: 6 GPRRLAGLQRTPAAYAN-EAALAISGRADEEGAAGAGSKLWRR----PRGAVS-AGAPGS 59
GP+ G +R P+ A + A GR E G GA R P+G V +GAPG
Sbjct: 525 GPKGAPG-ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 583
Query: 60 PLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGR--- 116
P PP P G A +PG PGP G G+AG G
Sbjct: 584 D---------GRPGPPGPQG--------ARGQPGVMGFPGPKGANGE-PGKAGEKGLPGA 625
Query: 117 -----LRCSAAALSAAQRGGPARA------QVPPALRTFS--PGPASPPRASPGGRPGSE 163
L AA GPA Q P F PGP PP GG+PG +
Sbjct: 626 PGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPP--GEGGKPGDQ 683
Query: 164 -------ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT- 215
A G G R P G PGA G+ R L TP P G SG
Sbjct: 684 GVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG----LPGTPGTDGP-KGASGPAG 738
Query: 216 ----RGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
+GP L G+ + A P G+ G + P A + G G GPPG
Sbjct: 739 PPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG--- 795
Query: 272 PACSIG-------PGLARLAALGGLP 290
PA + G PG A A G P
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAP 821
Score = 59.7 bits (143), Expect = 3e-09
Identities = 82/282 (29%), Positives = 101/282 (35%), Gaps = 51/282 (18%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP+ LAG + + G+ E G G P + G G+P
Sbjct: 972 GPQGLAG---------QRGIVGLPGQRGERGFPGL-------PGPSGEPGKQGAPGASGD 1015
Query: 66 APPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRC 119
PP P PP P G P R P A PG + G G R G G+ G
Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGS 1075
Query: 120 SAAALSAAQRG--GPARAQVP-----PALRTFSPGPASPPRASPG--GRPGSEA-RGRSG 169
A ++G G A AQ P PA GP P R G G PG +G G
Sbjct: 1076 PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGP-RGDKGEAGEPGERGLKGHRG 1134
Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
+ +P GPPG SG ++ + RGPP GPV SG + +
Sbjct: 1135 FTGLQGLP---GPPGPSG---DQGASGPAGPSGPRGPP---------GPVGPSGKDGANG 1179
Query: 230 WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
P P G +G PA P PG GPPG GI
Sbjct: 1180 IPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP---GPPGPGI 1218
Score = 59.3 bits (142), Expect = 4e-09
Identities = 89/304 (29%), Positives = 107/304 (35%), Gaps = 66/304 (21%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP AG P A A G A ++G AGA P+G A P P V+
Sbjct: 828 GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG-----PQGPSGAPGPQGPT-GVT 881
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
P A PPG PG+ +PGP G SG+ G G +
Sbjct: 882 GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGP-SGKDGPKG---------A 931
Query: 126 AAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGA 185
G P RA P GPA PP G PG + G SGAE GPPG
Sbjct: 932 RGDSGPPGRAGEPGL-----QGPAGPPGEK--GEPGDD--GPSGAE---------GPPGP 973
Query: 186 SGVGSER----------DRKFQLHQTPA--------------RGPPFP-GISGMTRGPVV 220
G+ +R +R F P+ RGPP P G G+T GP
Sbjct: 974 QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT-GPAG 1032
Query: 221 LSGVNRQHR--WPPGASPSRSL----GEAGGERPARALRRPRAPGRAGGGGPPGGGIPAC 274
G PPG + + GE G A P +PG AG G G A
Sbjct: 1033 EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1092
Query: 275 SIGP 278
+ GP
Sbjct: 1093 AQGP 1096
Score = 52.8 bits (125), Expect = 4e-07
Identities = 89/307 (28%), Positives = 111/307 (36%), Gaps = 64/307 (20%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVSA------- 54
GP GL P G E GA G G + + RG+ A
Sbjct: 660 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR 719
Query: 55 GAPGSPLYRVSAPPPAPPPPPPPG--GPSR-----SERPRAGLRP-----GAFVSPGPLG 102
G PG+P P A P PPG GP ER AG+ G GP G
Sbjct: 720 GLPGTP--GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG 777
Query: 103 RRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP--RASPGGRP 160
GR G G + A + ++G +V P PGPA R +PG R
Sbjct: 778 APGKDGGR-GLTGPIGPPGPAGANGEKG-----EVGP------PGPAGSAGARGAPGERG 825
Query: 161 GSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMT--RG 217
+ G +G GPPGA G + + + Q G P P G SG +G
Sbjct: 826 ETGPPGPAGFA---------GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQG 876
Query: 218 PVVLSGVN--RQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACS 275
P ++G R + PPGA+ G AG P PG G GPPG P+
Sbjct: 877 PTGVTGPKGARGAQGPPGATGFP--GAAGRVGP---------PGSNGNPGPPGPPGPSGK 925
Query: 276 IGPGLAR 282
GP AR
Sbjct: 926 DGPKGAR 932
Score = 50.8 bits (120), Expect = 1e-06
Identities = 73/257 (28%), Positives = 88/257 (34%), Gaps = 56/257 (21%)
Query: 71 PPPPPPPGGPSRSERPRAGL----------------RPGAFVSPGPLGRRASCSGRAGSA 114
P PP P GP+ + PR PG +PGP G G G
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGP-PGPPGLG 176
Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSP-GPASPPRASPGGRPGSEA-RGRSG--A 170
G A + GG AQ+ P GP PP P G PG + +G G
Sbjct: 177 GNFAAQMAGGFDEKAGG---AQLGVMQGPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPG 231
Query: 171 ECARRVPL-HHGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-------- 214
E P+ GPPG G + + + RGPP FPG G+
Sbjct: 232 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 291
Query: 215 ------TRGPVVLSGVNRQHRWP-----PGASPSRSL-GEAGGERPARALRRPRAPGRAG 262
+G GV + P PG R L GE G PA A G+ G
Sbjct: 292 YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 351
Query: 263 GGGPPGGGIPACSIGPG 279
GPPG PA GPG
Sbjct: 352 PAGPPGPVGPAG--GPG 366
Score = 30.8 bits (68), Expect = 1.6
Identities = 33/100 (33%), Positives = 35/100 (35%), Gaps = 15/100 (15%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSA-GAPG-----S 59
G R GLQ P SG A G G + P G A G PG
Sbjct: 1131 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVG--PSGKDGANGIPGPIGPPG 1188
Query: 60 PLYRV-----SAPP--PAPPPPPPPGGPSRSERPRAGLRP 92
P R + PP P PP PP P GP AGL P
Sbjct: 1189 PRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGP 1228
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 77.8 bits (190), Expect = 1e-14
Identities = 92/289 (31%), Positives = 117/289 (40%), Gaps = 39/289 (13%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRG-AVSAGAPGSPLYR 63
G R G + A + ++G G AGA G K P G A SAGA G+P R
Sbjct: 696 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 755
Query: 64 VSAPPPAPP----PPPPPGGP-SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLR 118
PP P PP G P ++ E+ AG + G +PGP G SG G G
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK-GDAGAPGPQGP----SGAPGPQGPTG 810
Query: 119 CSAAALSAAQRGGP-------ARAQVPPALRTFSPGPASPPRASPGGRPGSE-ARGRSGA 170
+ + +G P A +V P +PGP PP P G+ G + ARG SG
Sbjct: 811 VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP--GPSGKDGPKGARGDSGP 868
Query: 171 ECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHR 229
P GP G G E+ + A GPP P G++G RG V L G +
Sbjct: 869 PGRAGEPGLQGPAGPPG---EKGEPGDDGPSGAEGPPGPQGLAGQ-RGIVGLPGQRGERG 924
Query: 230 WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
+P PS G+ G APG +G GPPG P GP
Sbjct: 925 FPGLPGPSGEPGKQG------------APGASGDRGPPGPVGPPGLTGP 961
Score = 73.2 bits (178), Expect = 3e-13
Identities = 97/328 (29%), Positives = 120/328 (36%), Gaps = 56/328 (17%)
Query: 6 GPRRLAGLQRTPA---AYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-------- 53
GPR G +P A N I G GA G AG+ + PRG
Sbjct: 321 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 380
Query: 54 -----AGAPGSPLYRVSAPPPAPPPPP-PPGGPSRS-ERPRAGLR--PGAFVSPGPLGRR 104
G PG ++ P P P P G P + E + G R PG GP G R
Sbjct: 381 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER 440
Query: 105 AS-----------CSGRAGSAGRLRCSAAALSAAQRGGPARAQVP--PALR--TFSPGPA 149
+ +G G+ G S A G P R P P R T PG A
Sbjct: 441 GAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 500
Query: 150 SPP-RASPGGRPGSEAR-GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG-P 206
P + P G PG + R G G + AR P G PG G E + + +G P
Sbjct: 501 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE------KGLP 554
Query: 207 PFPGISGMTR--GPVVLSGVNRQHRWPPG-ASPSRSLGEAGGERPARALRRPRAPGRAGG 263
PG+ G+ G +G PPG A P+ GE G P+ P PG G
Sbjct: 555 GAPGLRGLPGKDGETGAAG-------PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE 607
Query: 264 GGPPGG-GIPACSIGPGLARLAALGGLP 290
GG PG G+P + PGL G P
Sbjct: 608 GGKPGDQGVPGEAGAPGLVGPRGERGFP 635
Score = 71.6 bits (174), Expect = 8e-13
Identities = 81/295 (27%), Positives = 103/295 (34%), Gaps = 53/295 (17%)
Query: 17 PAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-------AGAPGSPLYRVSAPPP 69
P A ++G DE+ A GA + + P G + AGAPG ++ + P
Sbjct: 103 PPGLGGNFAAQMAGGFDEK-AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEP 161
Query: 70 APP----------PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--SCSGRAGSAGRL 117
P PP PPG P + G PGP G R G G G
Sbjct: 162 GEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHR 221
Query: 118 RCSAAALSAAQRGGPA-RAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRV 176
+ + G P + + SPGP P R PG R + G +GA
Sbjct: 222 GYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP-RGLPGERGRTGPAGAAGARGNDGQ 280
Query: 177 PLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASP 236
P GPPG G PA GP FPG G +G A P
Sbjct: 281 PGPAGPPGPVG--------------PAGGPGFPGAPG-AKGE---------------AGP 310
Query: 237 SRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 290
+ + G G + P P +PG AG G PG GIP G +A G P
Sbjct: 311 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 365
Score = 65.9 bits (159), Expect = 4e-11
Identities = 82/276 (29%), Positives = 96/276 (34%), Gaps = 37/276 (13%)
Query: 30 GRADEEGAAG----AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRS-- 83
G A E+G G G K PRG G PG+P PP PP PP GG +
Sbjct: 57 GPAGEQGPRGDRGDKGEKGAPGPRGR--DGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQM 114
Query: 84 ----ERPRAGLRPGAFVSP-GPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPA 133
+ G + G P GP+G R G AG+ G + G GP
Sbjct: 115 AGGFDEKAGGAQLGVMQGPMGPMGPRGP-PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR 173
Query: 134 RAQVPPALRTFSPGPASPPRASPGGRPGSE-ARGRSGAECARRVPLHHGPPGASGVGSER 192
PP P +A G PG + ARG G V H G PG G E
Sbjct: 174 GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA 233
Query: 193 DR---KFQLHQTPARGPP-------FPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 242
K + G P PG G T GP +G P A P +G
Sbjct: 234 GAPGVKGESGSPGENGSPGPMGPRGLPGERGRT-GPAGAAGARGNDGQPGPAGPPGPVGP 292
Query: 243 AGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
AGG P APG G GP G P + GP
Sbjct: 293 AGGP------GFPGAPGAKGEAGPTGARGPEGAQGP 322
Score = 62.0 bits (149), Expect = 6e-10
Identities = 98/326 (30%), Positives = 116/326 (35%), Gaps = 70/326 (21%)
Query: 6 GPRRLAGLQRTPAAYAN-EAALAISGRADEEGAAGAGSKLWRR----PRGAVS-AGAPGS 59
GP+ G +R P+ A + A GR E G GA R P+G V +GAPG
Sbjct: 456 GPKGAPG-ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 514
Query: 60 PLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGR--- 116
P PP P G A +PG PGP G G+AG G
Sbjct: 515 D---------GRPGPPGPQG--------ARGQPGVMGFPGPKGANGE-PGKAGEKGLPGA 556
Query: 117 -----LRCSAAALSAAQRGGPARA------QVPPALRTFS--PGPASPPRASPGGRPGSE 163
L AA GPA Q P F PGP PP GG+PG +
Sbjct: 557 PGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPP--GEGGKPGDQ 614
Query: 164 -------ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT- 215
A G G R P G PGA G+ R L TP P G SG
Sbjct: 615 GVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG----LPGTPGTDGP-KGASGPAG 669
Query: 216 ----RGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
+GP L G+ + A P G+ G + P A + G G GPPG
Sbjct: 670 PPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG--- 726
Query: 272 PACSIG-------PGLARLAALGGLP 290
PA + G PG A A G P
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAP 752
Score = 59.7 bits (143), Expect = 3e-09
Identities = 82/282 (29%), Positives = 101/282 (35%), Gaps = 51/282 (18%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP+ LAG + + G+ E G G P + G G+P
Sbjct: 903 GPQGLAG---------QRGIVGLPGQRGERGFPGL-------PGPSGEPGKQGAPGASGD 946
Query: 66 APPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRC 119
PP P PP P G P R P A PG + G G R G G+ G
Sbjct: 947 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGS 1006
Query: 120 SAAALSAAQRG--GPARAQVP-----PALRTFSPGPASPPRASPG--GRPGSEA-RGRSG 169
A ++G G A AQ P PA GP P R G G PG +G G
Sbjct: 1007 PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGP-RGDKGEAGEPGERGLKGHRG 1065
Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
+ +P GPPG SG ++ + RGPP GPV SG + +
Sbjct: 1066 FTGLQGLP---GPPGPSG---DQGASGPAGPSGPRGPP---------GPVGPSGKDGANG 1110
Query: 230 WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
P P G +G PA P PG GPPG GI
Sbjct: 1111 IPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP---GPPGPGI 1149
Score = 59.3 bits (142), Expect = 4e-09
Identities = 89/304 (29%), Positives = 107/304 (35%), Gaps = 66/304 (21%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP AG P A A G A ++G AGA P+G A P P V+
Sbjct: 759 GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG-----PQGPSGAPGPQGPT-GVT 812
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
P A PPG PG+ +PGP G SG+ G G +
Sbjct: 813 GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGP-SGKDGPKG---------A 862
Query: 126 AAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGA 185
G P RA P GPA PP G PG + G SGAE GPPG
Sbjct: 863 RGDSGPPGRAGEPGL-----QGPAGPPGEK--GEPGDD--GPSGAE---------GPPGP 904
Query: 186 SGVGSER----------DRKFQLHQTPA--------------RGPPFP-GISGMTRGPVV 220
G+ +R +R F P+ RGPP P G G+T GP
Sbjct: 905 QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT-GPAG 963
Query: 221 LSGVNRQHR--WPPGASPSRSL----GEAGGERPARALRRPRAPGRAGGGGPPGGGIPAC 274
G PPG + + GE G A P +PG AG G G A
Sbjct: 964 EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1023
Query: 275 SIGP 278
+ GP
Sbjct: 1024 AQGP 1027
Score = 52.8 bits (125), Expect = 4e-07
Identities = 89/307 (28%), Positives = 111/307 (36%), Gaps = 64/307 (20%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVSA------- 54
GP GL P G E GA G G + + RG+ A
Sbjct: 591 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR 650
Query: 55 GAPGSPLYRVSAPPPAPPPPPPPG--GPSR-----SERPRAGLRP-----GAFVSPGPLG 102
G PG+P P A P PPG GP ER AG+ G GP G
Sbjct: 651 GLPGTP--GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG 708
Query: 103 RRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP--RASPGGRP 160
GR G G + A + ++G +V P PGPA R +PG R
Sbjct: 709 APGKDGGR-GLTGPIGPPGPAGANGEKG-----EVGP------PGPAGSAGARGAPGERG 756
Query: 161 GSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMT--RG 217
+ G +G GPPGA G + + + Q G P P G SG +G
Sbjct: 757 ETGPPGPAGFA---------GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQG 807
Query: 218 PVVLSGVN--RQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACS 275
P ++G R + PPGA+ G AG P PG G GPPG P+
Sbjct: 808 PTGVTGPKGARGAQGPPGATGFP--GAAGRVGP---------PGSNGNPGPPGPPGPSGK 856
Query: 276 IGPGLAR 282
GP AR
Sbjct: 857 DGPKGAR 863
Score = 50.8 bits (120), Expect = 1e-06
Identities = 73/257 (28%), Positives = 88/257 (34%), Gaps = 56/257 (21%)
Query: 71 PPPPPPPGGPSRSERPRAGL----------------RPGAFVSPGPLGRRASCSGRAGSA 114
P PP P GP+ + PR PG +PGP G G G
Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGP-PGPPGLG 107
Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSP-GPASPPRASPGGRPGSEA-RGRSG--A 170
G A + GG AQ+ P GP PP P G PG + +G G
Sbjct: 108 GNFAAQMAGGFDEKAGG---AQLGVMQGPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPG 162
Query: 171 ECARRVPL-HHGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-------- 214
E P+ GPPG G + + + RGPP FPG G+
Sbjct: 163 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 222
Query: 215 ------TRGPVVLSGVNRQHRWP-----PGASPSRSL-GEAGGERPARALRRPRAPGRAG 262
+G GV + P PG R L GE G PA A G+ G
Sbjct: 223 YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 282
Query: 263 GGGPPGGGIPACSIGPG 279
GPPG PA GPG
Sbjct: 283 PAGPPGPVGPAG--GPG 297
Score = 30.8 bits (68), Expect = 1.6
Identities = 33/100 (33%), Positives = 35/100 (35%), Gaps = 15/100 (15%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSA-GAPG-----S 59
G R GLQ P SG A G G + P G A G PG
Sbjct: 1062 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVG--PSGKDGANGIPGPIGPPG 1119
Query: 60 PLYRV-----SAPP--PAPPPPPPPGGPSRSERPRAGLRP 92
P R + PP P PP PP P GP AGL P
Sbjct: 1120 PRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGP 1159
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 76.3 bits (186), Expect = 3e-14
Identities = 98/317 (30%), Positives = 120/317 (37%), Gaps = 37/317 (11%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
GPR G Q +G A GA G G+K G AGAPG P R
Sbjct: 359 GPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGI--AGAPGFPGARG 416
Query: 65 SAPPPAP-PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRR-----ASCSGRAGSAGRLR 118
+ P P PP P G P + GA PGP+G + A G+ G+ G
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG 476
Query: 119 CSAAALSAAQRGGPARAQVP----------PALRTFSPGPASPPRASPG--GRPGSE--- 163
+ +RGGP P PA SPGPA P+ SPG GRPG
Sbjct: 477 PTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAG-PKGSPGEAGRPGEAGLP 535
Query: 164 -ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP----FPGISGMTRGP 218
A+G +G+ + GPPG +G + R ARG FPG G P
Sbjct: 536 GAKGLTGSPGSPGPDGKTGPPGPAG---QDGRPGPPGPPGARGQAGVMGFPGPKGAAGEP 592
Query: 219 VVLSGVNRQHRWPPGA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSI 276
R PPGA P+ GEAG + P G G G PG G+P +
Sbjct: 593 G--KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAG 650
Query: 277 GPGLARLAALGGLPSIL 293
PG A G+P L
Sbjct: 651 PPGEAGKPGEQGVPGDL 667
Score = 73.9 bits (180), Expect = 2e-13
Identities = 95/293 (32%), Positives = 114/293 (38%), Gaps = 29/293 (9%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRG-AVSAGAPGSPLYR 63
G R AG + + + ++G G AGA G K P G A GA G+P R
Sbjct: 743 GDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDR 802
Query: 64 VSAPPPAPP----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRC 119
PP P PP G P P G PGP G A G G+ G
Sbjct: 803 GEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP-AGPPGPIGNVGAPGA 861
Query: 120 SAAALSAAQRGGP----ARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECAR 174
A SA G A +V P + + GP PP P G+ G + RG +G A
Sbjct: 862 KGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP--GPAGKEGGKGPRGETGP--AG 917
Query: 175 RVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPG 233
R P GPPG G E+ A G P P GI+G RG V L G + +P
Sbjct: 918 R-PGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ-RGVVGLPGQRGERGFPGL 975
Query: 234 ASPSRSLGEAGGERPARAL--RRPRAP-GRAGGGGPPG----GGIPACSIGPG 279
PS GE G + P+ A R P P G G GPPG G P PG
Sbjct: 976 PGPS---GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPG 1025
Score = 67.8 bits (164), Expect = 1e-11
Identities = 98/316 (31%), Positives = 116/316 (36%), Gaps = 61/316 (19%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP+ AG + +P + + +GR E G GA G+PGSP
Sbjct: 503 GPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL----------TGSPGSPGPDGK 552
Query: 66 APPPAPPP----PPPPGGPSRSERPRAGLR-----PGAFVSPGPLGRRA--------SCS 108
PP P P PPG P R +AG+ GA PG G R +
Sbjct: 553 TGPPGPAGQDGRPGPPGPPGA--RGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPA 610
Query: 109 GRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPP--------RASPG- 157
G+ G AG A A +RG GPA + L PGPA PP + PG
Sbjct: 611 GKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGL----PGPAGPPGEAGKPGEQGVPGD 666
Query: 158 -GRPG-SEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP----FPGI 211
G PG S ARG G R V GP G G A G P PG+
Sbjct: 667 LGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGL 726
Query: 212 SGMT--RGPVVLSGV--NRQHRWPPGASPSRSLGEAGGERPARALRRPRAP-GRAGGGGP 266
GM RG L G +R P GA S G+ R L P P G AG G
Sbjct: 727 QGMPGERGAAGLPGPKGDRGDAGPKGADGSP------GKDGVRGLTGPIGPPGPAGAPGD 780
Query: 267 PGGGIPACSIGPGLAR 282
G P+ GP AR
Sbjct: 781 KGESGPSGPAGPTGAR 796
Score = 65.9 bits (159), Expect = 4e-11
Identities = 80/258 (31%), Positives = 89/258 (34%), Gaps = 34/258 (13%)
Query: 50 GAVSAGAPGSPL--YRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASC 107
G +S P P + PP AP P G P P A G PGP G+
Sbjct: 173 GGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGD- 231
Query: 108 SGRAGSAGRLRCSAAALSAAQRGGPARAQVP--PALRTFS-----PGPASPPRASPGGRP 160
G AG GR RG P A +P R FS G A P A P G P
Sbjct: 232 DGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP--AGPKGEP 289
Query: 161 GSEAR-GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP----------FP 209
GS G G R +P G PGA G R T A GPP FP
Sbjct: 290 GSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGND---GATGAAGPPGPTGPAGPPGFP 346
Query: 210 GISGMT--------RGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRA 261
G G RG GV + P A + G G + A APG A
Sbjct: 347 GAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA 406
Query: 262 GGGGPPGGGIPACSIGPG 279
G G PG P+ GPG
Sbjct: 407 GAPGFPGARGPSGPQGPG 424
Score = 65.9 bits (159), Expect = 4e-11
Identities = 103/365 (28%), Positives = 118/365 (32%), Gaps = 91/365 (24%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAV-SAGAPGSPLYR 63
GP AG P A A G A +G AG G P G + + GAPG+ R
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 64 VSAPPPA---------------------PPPPPPPGGPSRSERPRAGLRP-------GAF 95
SA PP PP PP P G + PR P G
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPP 925
Query: 96 VSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRAS 155
PGP G + S G G AG A QRG P R P P
Sbjct: 926 GPPGPAGEKGS-PGADGPAGAPGTPGPQGIAGQRGVVGL----PGQRGERGFPGLP---G 977
Query: 156 PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDR------------------KFQ 197
P G PG + G SGA R P GPPG +G E R K
Sbjct: 978 PSGEPGKQ--GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGD 1035
Query: 198 LHQTPARGPP-FPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPA------- 249
+T GPP PG G GPV +G + A P+ +G G PA
Sbjct: 1036 RGETGPAGPPGAPGAPGAP-GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Query: 250 ----------RALRR----------PRAPGRAGGGGPPGGGIPACSIGP----GLARLAA 285
R ++ P PG G GP G PA GP G
Sbjct: 1095 DKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDG 1154
Query: 286 LGGLP 290
L GLP
Sbjct: 1155 LNGLP 1159
Score = 65.5 bits (158), Expect = 6e-11
Identities = 95/329 (28%), Positives = 118/329 (35%), Gaps = 77/329 (23%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAG----------AGSKLWRRPRGAVSAGAPGSPL 61
GL +P + + G A ++G G AG + P+GA AG PG
Sbjct: 539 GLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGA--AGEPGKAG 596
Query: 62 YR-VSAPPPAPPP-----------PPPPGGPS--RSERPRAGLRPGAFVSPGPLGR--RA 105
R V PP A P PP P GP+ R E+ AG PG PGP G A
Sbjct: 597 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG-SPGFQGLPGPAGPPGEA 655
Query: 106 SCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSE-A 164
G G G L + + +RG P V PGPA P A+ G PG++ A
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGP-----PGPAGPRGAN--GAPGNDGA 708
Query: 165 RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP----------GISGM 214
+G +GA A P G PG G+ ER RG P G+ G+
Sbjct: 709 KGDAGAPGA---PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGL 765
Query: 215 T-----------------------RGPVVLSGV--NRQHRWPPGASPSRSLGEAGGERPA 249
T GP G +R PPG P+ G G +
Sbjct: 766 TGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG--PAGFAGPPGADGQP 823
Query: 250 RALRRPRAPGRAGGGGPPGGGIPACSIGP 278
A P G G GPPG PA GP
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPAGPAGPPGP 852
Score = 64.7 bits (156), Expect = 1e-10
Identities = 91/295 (30%), Positives = 110/295 (37%), Gaps = 55/295 (18%)
Query: 29 SGRADEEGAAGA----------GSKLWRRPRGAV----SAGAPGSPLYRVSAPPPAPPPP 74
SG A GA GA G + P GA + G PG + A PP P P
Sbjct: 787 SGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP 846
Query: 75 PPPGGP--------SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSA 126
P GP ++ R AG PGA PG GR G G +G A
Sbjct: 847 AGPPGPIGNVGAPGAKGARGSAG-PPGATGFPGAAGR----VGPPGPSGNAGPPGPPGPA 901
Query: 127 AQRGGPA-RAQVPPALRTFSPGPASPP-----RASPG-----GRPGSEA-RGRSGAECAR 174
+ GG R + PA R GP PP + SPG G PG+ +G +G
Sbjct: 902 GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV 961
Query: 175 RVPLHHGP---PGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRW 230
+P G PG G E ++ + RGPP P G G+ GP SG
Sbjct: 962 GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLA-GPPGESG----REG 1016
Query: 231 PPGA--SPSR-----SLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
PGA SP R + G+ G PA P APG G GP G GP
Sbjct: 1017 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071
Score = 60.1 bits (144), Expect = 2e-09
Identities = 81/286 (28%), Positives = 96/286 (33%), Gaps = 52/286 (18%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP G + + G+ E G G P + G G
Sbjct: 941 GPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGL-------PGPSGEPGKQGPSGASGE 993
Query: 66 APPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSA 121
PP P PP PPG R P A PG SPG G R +G AG G +
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE-TGPAGPPG----AP 1048
Query: 122 AALSAAQRGGPA-----RAQVPPALRTFSPGPASPPRA-SPGGRPGSEA-RGRSGAECAR 174
A A GPA R + PA GP P A P G G +G +G + R
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETGPA---GPAGPVGPVGARGPAGPQGPRGDKGETGEQGDR 1105
Query: 175 RVPLH------HGPPGASGVGSERDRKFQLHQTPARGPP----FPGISGMTRGPVVLSGV 224
+ H GPPG G E+ RGPP PG G+ P +
Sbjct: 1106 GIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIG-- 1163
Query: 225 NRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGG 270
PPG P G+AG P P PG G GPP G
Sbjct: 1164 ------PPG--PRGRTGDAGPVGP------PGPPGPPGPPGPPSAG 1195
Score = 58.5 bits (140), Expect = 7e-09
Identities = 86/311 (27%), Positives = 93/311 (29%), Gaps = 84/311 (27%)
Query: 46 RRPRGAVSA----GAPGSPLYRVSAPPPAPPPPP-------------------------- 75
R PRG G PG P PP PP PP
Sbjct: 120 RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPG 179
Query: 76 ------------PPGGPSRSERPRAGLRPGAFVSPGPLGRRA--------SCSGRAGSAG 115
PPG P PG + GP+G R G AG G
Sbjct: 180 PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPG 239
Query: 116 RLRCSAAALSAAQRGGPARAQVP--PALRTFS-----PGPASPPRASPGGRPGSEA-RGR 167
R RG P A +P R FS G A P A P G PGS G
Sbjct: 240 RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP--AGPKGEPGSPGENGA 297
Query: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
G R +P G PGA G R T A GPP P GP G
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGND---GATGAAGPPGP------TGPAGPPGF--- 345
Query: 228 HRWPPGASPSRS----LGEAGGERPARALRRPRAPGRAGGGGPPGG----GIPACSIGPG 279
PGA ++ G G E P P PG AG GP G G P G
Sbjct: 346 ----PGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANG 401
Query: 280 LARLAALGGLP 290
+A G P
Sbjct: 402 APGIAGAPGFP 412
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 75.1 bits (183), Expect = 7e-14
Identities = 91/283 (32%), Positives = 112/283 (39%), Gaps = 33/283 (11%)
Query: 19 AYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRV------SAPPPAPP 72
+Y ++ +A+ G A G AG P + G+PGSP Y+ A P PP
Sbjct: 157 SYDVKSGVAVGGLAGYPGPAGPPGPPGP-PGTSGHPGSPGSPGYQGPPGEPGQAGPSGPP 215
Query: 73 PPPPPGGPSR-----SERPRAGLRPGAFVSPGPLGRR--ASCSGRAGSAGRLRCSAAALS 125
PP GPS E R G RPG PGP G + A G G G
Sbjct: 216 GPPGAIGPSGPAGKDGESGRPG-RPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGE 274
Query: 126 AAQRGGPA-RAQVPPALRTFSPGPASPPRASPG--GRPG----SEARGRSGAECARRVPL 178
+ G P + + +PGP P R +PG GRPG + ARG GA + P
Sbjct: 275 KGETGAPGLKGENGLPGENGAPGPMGP-RGAPGERGRPGLPGAAGARGNDGARGSDGQPG 333
Query: 179 HHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSR 238
GPPG +G K ++ PA P G G P Q PPG P
Sbjct: 334 PPGPPGTAGFPGSPGAKGEV--GPAGSPGSNGAPGQRGEPGPQGHAGAQ--GPPG--PPG 387
Query: 239 SLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PGL 280
G GG+ P APG G GPPG PA + G PGL
Sbjct: 388 INGSPGGKGEMGPAGIPGAPGLMGARGPPG---PAGANGAPGL 427
Score = 66.2 bits (160), Expect = 3e-11
Identities = 81/294 (27%), Positives = 97/294 (32%), Gaps = 65/294 (22%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVSAGAPGSPL 61
G R AG+ P A + G G GA G+ +R P G P
Sbjct: 447 GERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPA 506
Query: 62 YRVSAPPPAPPPPPP--------PGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGS 113
AP PA P PGGP P + PG+ PGP G + SGR G
Sbjct: 507 GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGE-SGRPGP 565
Query: 114 AGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSE----ARGR 167
PGP S PR PG G PG + A G+
Sbjct: 566 --------------------------------PGP-SGPRGQPGVMGFPGPKGNDGAPGK 592
Query: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
+G P GPPG +G +T +GPP P G +G G
Sbjct: 593 NGERGGPGGPGPQGPPGKNG------------ETGPQGPPGPTGPGGDKGDTGPPGPQGL 640
Query: 228 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGL 280
P P G+ G P P APG G G PG G P + PGL
Sbjct: 641 QGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGL 694
Score = 65.9 bits (159), Expect = 4e-11
Identities = 109/365 (29%), Positives = 127/365 (34%), Gaps = 95/365 (26%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPG------- 58
GP+ L GL T G + GA GA P G AGAPG
Sbjct: 636 GPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA-------PGGKGDAGAPGERGPPGL 688
Query: 59 --SPLYRVSAPPPAPP-------PPPPPGG---PSRSERP--RAGLR------------- 91
+P R A PP P PP PPG P P R GL
Sbjct: 689 AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGG 748
Query: 92 PGAFVSPGPLGRRASC--------SGRAGSAGRLRCSAAALSAAQRGGPA-RAQVPPALR 142
PGA PG G R +G+ G G A RG P R + P
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP--- 805
Query: 143 TFSPGPASPPRASPG--GRPGSEA-RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLH 199
PGPA P A PG G PG + RG G + P GPPG SG +
Sbjct: 806 ---PGPAGFPGA-PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG 861
Query: 200 QTPARGPP----FPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRP 255
+ + G P FPG G+ GP +G + PPG PS S G+ G PA P
Sbjct: 862 ERGSPGGPGAAGFPGARGLP-GPPGSNG----NPGPPG--PSGSPGKDGPPGPAGNTGAP 914
Query: 256 RAPGRAG---------------GGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300
+PG +G GPPG P G AR L G P +P
Sbjct: 915 GSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGAR--GLAGPPG-------MP 965
Query: 301 SPRSS 305
PR S
Sbjct: 966 GPRGS 970
Score = 65.1 bits (157), Expect = 8e-11
Identities = 86/297 (28%), Positives = 108/297 (36%), Gaps = 36/297 (12%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-------AGAPGSPLYR 63
G + +P A A G A GA G AG PRG+ +G PG+
Sbjct: 930 GEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLS 989
Query: 64 VSAPPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRL 117
PP P P G P R P + PG SPG G R G G+ G
Sbjct: 990 GERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 1049
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVP 177
A + G R + PA +PGPA R +PG + +G +G A +
Sbjct: 1050 GPPGPVGPAGKSGD--RGESGPAGPAGAPGPAGS-RGAPGPQGPRGDKGETGERGAAGIK 1106
Query: 178 LHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ-----HRWPP 232
H G PG G Q + GP P RGPV SG + H P
Sbjct: 1107 GHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGP------RGPVGPSGPPGKDGTSGHPGPI 1160
Query: 233 GA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGG 288
G P + GE G E +P PG G GP GG+ G A +A +GG
Sbjct: 1161 GPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGV-------GAAAIAGIGG 1210
Score = 58.2 bits (139), Expect = 9e-09
Identities = 69/229 (30%), Positives = 86/229 (37%), Gaps = 31/229 (13%)
Query: 67 PPPAPPPPP-------------PPGGPSRSERPRAGLRPGAFVSPGPLGRRASC-SGRAG 112
PP AP PP PPG P R+ P +PG+ SPGP G SC +G
Sbjct: 91 PPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQN 150
Query: 113 SAGR-----LRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGR 167
+ + ++ A A GPA PP S P SP G PG G+
Sbjct: 151 YSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEP--GQ 208
Query: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGMTRGPVV 220
+G P GP G +G E R + + GPP PG GM +G
Sbjct: 209 AGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGM-KGHRG 267
Query: 221 LSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPR-APGRAGGGGPPG 268
G N + + GA + GE A PR APG G G PG
Sbjct: 268 FDGRNGE-KGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPG 315
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 66.2 bits (160), Expect = 3e-11
Identities = 87/311 (27%), Positives = 106/311 (34%), Gaps = 46/311 (14%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP L G + P + ++ G +G G PRG G PG P R
Sbjct: 2108 GPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPG-----PRG--QDGNPGLPGERGM 2160
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
A P P P GP G PGP G G AG AG S
Sbjct: 2161 AGPEGKPGLQGPRGPPGPV--------GGHGDPGPPG----APGLAGPAGPQGPSGLKGE 2208
Query: 126 AAQRGGPARAQVPPALRTFSPGPASP-----PRASPG--------GRPGSEAR-GRSGAE 171
+ G P R P PGP P P+ SPG G+PG+ R G SG +
Sbjct: 2209 PGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKD 2268
Query: 172 CARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWP 231
R P G PG+ G+ K + T A G G+ G G+
Sbjct: 2269 GDRGSP---GVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGE 2325
Query: 232 PGASPSRSL----------GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLA 281
PGA R L G AG + APG G G PG G+P PG
Sbjct: 2326 PGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPP 2385
Query: 282 RLAALGGLPSI 292
+ GLP +
Sbjct: 2386 GVKGDLGLPGL 2396
Score = 64.3 bits (155), Expect = 1e-10
Identities = 96/360 (26%), Positives = 124/360 (34%), Gaps = 94/360 (26%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-AGAPGS---PL 61
GP+ G++ + + GR+ +G GA P GA AG PG P
Sbjct: 1755 GPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGP--SGPNGAAGKAGDPGRDGLPG 1812
Query: 62 YRVSAPPPAPPPPPP-PGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
R P P PP PG P +P + G PG GR+ G +G++GR
Sbjct: 1813 LRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGE-KGDSGASGR---E 1868
Query: 121 AAALSAAQRGGPA--RAQVPPALRTFSPGPASPPRAS----PGGRPGSEARGRSGAECAR 174
+RG P Q PP L PGP PP PGG RG +G++ +
Sbjct: 1869 GRDGPKGERGAPGILGPQGPPGL----PGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQ 1924
Query: 175 RVPLHHGPPGASGVGSERDRKFQLHQTPA------------------------------- 203
+P G G G DR + A
Sbjct: 1925 GLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDS 1984
Query: 204 --RGPP-------FPGISGM-----TRGPVVLSGVNRQHRWPPGAS-------------- 235
+GPP FPG G+ GP G+ R PPG S
Sbjct: 1985 GEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGL 2044
Query: 236 PSRS--LGEAG--GERPARALR----------RPRAPGRAGGGGPPGGGIPACSIGPGLA 281
P R+ +GEAG GER R + P PG G GPPG + GPGL+
Sbjct: 2045 PGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLS 2104
Score = 62.8 bits (151), Expect = 4e-10
Identities = 86/297 (28%), Positives = 102/297 (34%), Gaps = 38/297 (12%)
Query: 15 RTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPP 74
R P A G E G G G G ++ G PG P S P P P
Sbjct: 1388 RGPPGLPGTAMKGDKGDRGERGPPGPGE-------GGIAPGEPGLPGLPGSPGPQGPVGP 1440
Query: 75 PPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--SCSGRAGSAGRLRCSAAALSAAQRG-- 130
P G A PG SPG G R G G G A +RG
Sbjct: 1441 PGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPP 1500
Query: 131 GPARAQVPPAL--RTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGV 188
GPA ++ P + R + GP PP P GR G + + A P GP G G
Sbjct: 1501 GPAGSRGLPGVAGRPGAKGPEGPP--GPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGD 1558
Query: 189 GSERDRKFQLHQTPARGPP---FPGISGM-----TRGPVVLSGVNRQHRWPPGAS-PSRS 239
+ RGPP PG G RGP+ L+G PPG S P
Sbjct: 1559 VGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTG----RAGPPGDSGPPGE 1614
Query: 240 LGEAGGERPARAL---RRPRAPGRAGGGGPPGG-GIPACSIGPGLARLAALGGLPSI 292
G+ G P + R G G GPPG G+ PG A L G P +
Sbjct: 1615 KGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGL------PGKAGERGLRGAPGV 1665
Score = 60.1 bits (144), Expect = 2e-09
Identities = 72/250 (28%), Positives = 83/250 (33%), Gaps = 56/250 (22%)
Query: 49 RGAVSA-GAPGSPLYRVSAPPPAPPPPPP--------------PGGPSRSERPRAGLRPG 93
RG V G PG P R AP P PP PG P R+ P PG
Sbjct: 1265 RGQVGPPGDPGLP-GRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPG 1323
Query: 94 AFVSPGPLGRRASCS--GRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP 151
SPG G R G G G + G P R PGP+ P
Sbjct: 1324 LKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKG--------DPGPSGP 1375
Query: 152 P-RASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPG 210
P P G PG GPPG G + D+ RGPP PG
Sbjct: 1376 PGPRGPLGDPGP-----------------RGPPGLPGTAMKGDK----GDRGERGPPGPG 1414
Query: 211 ISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG--GERPARALRRPRAPGRAGGGGPPG 268
G+ G L G+ P P +G G GE+ P PG+ G G G
Sbjct: 1415 EGGIAPGEPGLPGL------PGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQG 1468
Query: 269 GGIPACSIGP 278
P +IGP
Sbjct: 1469 PRGPPGAIGP 1478
Score = 60.1 bits (144), Expect = 2e-09
Identities = 88/305 (28%), Positives = 100/305 (32%), Gaps = 45/305 (14%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-AGAPGSPLYRV 64
GPR G+Q L + G +G G R P G AG PG
Sbjct: 1563 GPRGATGVQ----GERGPPGLVLPGDPGPKGDPGD-----RGPIGLTGRAGPPGD----- 1608
Query: 65 SAPP-----PAPPPPPPPGGPSRSERPRAGLR-----PGAFVSPGPLGRRA--SCSGRAG 112
S PP P P PP P GP R G + PG PG G R G G
Sbjct: 1609 SGPPGEKGDPGRPGPPGPVGP-RGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRG 1667
Query: 113 SAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAEC 172
G + G P + P PGP PP PG+ +G G
Sbjct: 1668 PVGEKGDQGDPGEDGRNGSPGSSG--PKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRG 1725
Query: 173 ARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPP 232
G PG G ER + RGPP P RGP G R PP
Sbjct: 1726 QEGPRGPKGDPGLPGAPGERGIE------GFRGPPGPQGDPGVRGPAGEKG----DRGPP 1775
Query: 233 GASPSRSL----GEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALG 287
G L G AG P A + PGR G G G G+P S PGL
Sbjct: 1776 GLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGED 1835
Query: 288 GLPSI 292
G P +
Sbjct: 1836 GKPGL 1840
Score = 56.6 bits (135), Expect = 3e-08
Identities = 81/302 (26%), Positives = 100/302 (33%), Gaps = 49/302 (16%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
G L G P + G GA G P A + G PG+P + S
Sbjct: 1272 GDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGS----PGRAGNPGTPGAPGLKGS 1327
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFV---SPGPLGRRA--SCSGRAGSAGRL--- 117
P P P GP R + G PG + PG GR+ SG G G L
Sbjct: 1328 PGLPGPRGDPGERGP-RGPKGEPG-APGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDP 1385
Query: 118 --RCSAAALSAAQRG-----------GPARAQVPPALRTFSPGPASPPRASPGGRPGSEA 164
R A +G GP + P P SP P G PG +
Sbjct: 1386 GPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKG 1445
Query: 165 RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPF----PGISGMTRGPVV 220
+ A +P G PG G RGPP G G GP+
Sbjct: 1446 EKGDSEDGAPGLPGQPGSPGEQG---------------PRGPPGAIGPKGDRGFP-GPLG 1489
Query: 221 LSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGPG 279
+G + R PPG + SR L G A+ P P GR G G PG +GP
Sbjct: 1490 EAG-EKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPA 1548
Query: 280 LA 281
+A
Sbjct: 1549 VA 1550
Score = 50.1 bits (118), Expect = 3e-06
Identities = 84/302 (27%), Positives = 103/302 (34%), Gaps = 67/302 (22%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP L G Q +P + G+ E G GA + GA G R S
Sbjct: 2233 GPSGLVGPQGSPG---------LPGQVGETGKPGAPGR----------DGASGKDGDRGS 2273
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
P P P P GP P PG G + + G AG L A
Sbjct: 2274 PGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGD---LVGEPGAKG 2330
Query: 126 AAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPPG 184
GP R + A R PG P G PG + +G G VP GPPG
Sbjct: 2331 DRGLPGP-RGEKGEAGRAGEPG--DPGEDGQKGAPGPKGFKGDPGV----GVPGSPGPPG 2383
Query: 185 ASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG 244
GV + G+ G+ P V+ +P P +G+ G
Sbjct: 2384 PPGVKGDL-----------------GLPGLPGAPGVVG-------FPGQTGPRGEMGQPG 2419
Query: 245 --GERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PGLARLAALGGLPSILESSRLLPS 301
GE R L P PGR G GP G P S+G PG + L G P + LP
Sbjct: 2420 PSGE---RGLAGP--PGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGV-----GLPG 2469
Query: 302 PR 303
PR
Sbjct: 2470 PR 2471
Score = 47.8 bits (112), Expect = 1e-05
Identities = 71/249 (28%), Positives = 77/249 (30%), Gaps = 32/249 (12%)
Query: 31 RADEEGAAGAGSKLWRRPRGAVSAGAPG-SPLYRVSAPPPAPPPPPPPGGPSRSERPRAG 89
R D GSK P SAG PG L P A P PG P + P
Sbjct: 2553 RGDNGDPGDKGSK--GEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIR 2610
Query: 90 LRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPA 149
G GP G + G G G + G P R P L
Sbjct: 2611 GEKGDVGFMGPRGLK----GERGVKGACGLDGEKGDKGEAGPPGR----PGLAGHKGEMG 2662
Query: 150 SPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKF------QLHQTPA 203
P G PG E G G + R GP G G ER +
Sbjct: 2663 EPGVPGQSGAPGKE--GLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGS 2720
Query: 204 RGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGG 263
GPP P S RGP L G + R PPG ER A P APG G
Sbjct: 2721 AGPPGPPGSVGPRGPEGLQG-QKGERGPPG------------ERVVGAPGVPGAPGERGE 2767
Query: 264 GGPPGGGIP 272
G PG P
Sbjct: 2768 QGRPGPAGP 2776
Score = 42.4 bits (98), Expect = 5e-04
Identities = 58/181 (32%), Positives = 65/181 (35%), Gaps = 33/181 (18%)
Query: 128 QRGGPARAQVPPALRTFSPGPASPP--------RASPG--GRPGSEARGRSGAECARRVP 177
Q G P +P RT +PGP PP R PG GRPGS GR+G P
Sbjct: 1267 QVGPPGDPGLPG--RTGAPGPQGPPGSATAKGERGFPGADGRPGSP--GRAGNPGTPGAP 1322
Query: 178 LHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPS 237
G PG G + + G P I G G G + PPG P
Sbjct: 1323 GLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKG-DPGPSGPPG--PR 1379
Query: 238 RSLGEAGGERPARALRRPRAPGRA--------GGGGPPGGGIPACSIGPGLARLAALGGL 289
LG+ G P P PG A G GPPG G I PG L L G
Sbjct: 1380 GPLGDPGPRGP------PGLPGTAMKGDKGDRGERGPPGPG--EGGIAPGEPGLPGLPGS 1431
Query: 290 P 290
P
Sbjct: 1432 P 1432
Score = 36.2 bits (82), Expect = 0.038
Identities = 75/266 (28%), Positives = 90/266 (33%), Gaps = 34/266 (12%)
Query: 30 GRADEEGAAGA----GSKLWRRPRGAV-SAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSE 84
GR +EG G GS+ R +G V SAG G SA PP P G
Sbjct: 2484 GRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDK--GDSAVILGPPGPRGAKGDMGER 2541
Query: 85 RPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALR 142
PR G GP G G GS G +A RG GP Q P
Sbjct: 2542 GPR-----GLDGDKGPRGDNGD-PGDKGSKGEPGDKGSAGLPGLRGLLGP---QGQPGAA 2592
Query: 143 TFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQL---- 198
P SP + G G +G G R + G GA G+ E+ K +
Sbjct: 2593 GIPGDPGSPGKDGVPGIRGE--KGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPG 2650
Query: 199 ------HQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARAL 252
H+ P PG SG G L G + P GE G ER +
Sbjct: 2651 RPGLAGHKGEMGEPGVPGQSGAP-GKEGLIGPKGDRGFDGQPGPKGDQGEKG-ERGTPGI 2708
Query: 253 RRPRAPGRAGGGGPPGGGIPACSIGP 278
PG +G G G P S+GP
Sbjct: 2709 GG--FPGPSGNDGSAGPPGPPGSVGP 2732
Score = 34.7 bits (78), Expect = 0.11
Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 182 PPGASGVGSERDRKFQLHQTPARGPPF-PGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240
P G G E + Q+ GPP PG+ G T P + PPG++ ++
Sbjct: 1252 PKGQKGEPGEMGLRGQV------GPPGDPGLPGRTGAP--------GPQGPPGSATAK-- 1295
Query: 241 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGL 280
GE G A RP +PGRAG G PG P PGL
Sbjct: 1296 GERGFPG---ADGRPGSPGRAGNPGTPGA--PGLKGSPGL 1330
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 66.2 bits (160), Expect = 3e-11
Identities = 77/268 (28%), Positives = 90/268 (33%), Gaps = 41/268 (15%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAP 71
G+Q P + A + G E GA G AG PGS P
Sbjct: 353 GIQGPPGPKGDPGAFGLKGEKGEPGADG-------------EAGRPGSSGPSGDEGQPGE 399
Query: 72 PPPPPPGGPSRSE-RPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG 130
P PP G + E P PG PG G R G G+ G A +G
Sbjct: 400 PGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPR----GTPGTRGPRGDPGEAGPQGDQG 455
Query: 131 GPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGS 190
VP PG A P P G G E G G+E AR P GPPG G+
Sbjct: 456 REGPVGVPG-----DPGEAGP--IGPKGYRGDE--GPPGSEGARGAPGPAGPPGDPGLMG 506
Query: 191 ERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG------ 244
ER P FPG G P G+N +P G+ G
Sbjct: 507 ERGEDGPAGNGTEGFPGFPGYPGNRGAP----GINGTKGYPGLKGDEGEAGDPGDDNNDI 562
Query: 245 ---GERPARALRRPRAP-GRAGGGGPPG 268
G + A+ R P P G G GPPG
Sbjct: 563 APRGVKGAKGYRGPEGPQGPPGHQGPPG 590
Score = 48.1 bits (113), Expect = 1e-05
Identities = 65/226 (28%), Positives = 79/226 (34%), Gaps = 38/226 (16%)
Query: 55 GAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSA 114
G PG P + S PP P G PGAF G G G G A
Sbjct: 338 GYPGLPGCKGSPGFDGIQGPPGPKGD-----------PGAFGLKGEKGE----PGADGEA 382
Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP-PRASPGGRPGSEARGRSGAECA 173
GR S + Q G P PP + + +P P +PG R G RG G
Sbjct: 383 GRPGSSGPSGDEGQPGEPG----PPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGT 438
Query: 174 RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
R G PG +G ++ R + P P PG +G P+ G R PPG
Sbjct: 439 RGP---RGDPGEAGPQGDQGR-----EGPVGVPGDPGEAG----PIGPKGY-RGDEGPPG 485
Query: 234 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 279
+ +R G PA P G G GP G G PG
Sbjct: 486 SEGAR-----GAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPGFPG 526
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 66.2 bits (160), Expect = 3e-11
Identities = 75/257 (29%), Positives = 94/257 (36%), Gaps = 15/257 (5%)
Query: 17 PAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSA-GAPGSPLYRVSAPPPAPPPP 74
P A + + I G + G+ G G + P G G G P R P PA PP
Sbjct: 1179 PGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLR-GDPGPAGPPG 1237
Query: 75 --PPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGP 132
PPG ++ P G PGP G +GR G+ G A+ R GP
Sbjct: 1238 LMGPPGFKGKTGHPGLPGPKGDCGKPGPPGS----TGRPGAEGE----PGAMGPQGRPGP 1289
Query: 133 ARAQVPPALRTFSPGPASPPRAS-PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSE 191
PP PGPA G R + RG +G P H GPPG G
Sbjct: 1290 PGHVGPPG-PPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGA 1348
Query: 192 RDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA 251
++ + GPP P G +G + P G S S+G G PA
Sbjct: 1349 AGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGE 1408
Query: 252 LRRPRAPGRAGGGGPPG 268
P APG +G G PG
Sbjct: 1409 RGHPGAPGPSGSPGLPG 1425
Score = 55.8 bits (133), Expect = 5e-08
Identities = 79/285 (27%), Positives = 104/285 (36%), Gaps = 58/285 (20%)
Query: 55 GAPGSPLYRVSAPPPAPPPPP-------PPGGPS-RSERPRAGLRPGAFVSPGPLGRRA- 105
G G P R S PP P PP PG P + ER GL G PGP G+
Sbjct: 1033 GEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLT-GDKGEPGPPGQPGY 1091
Query: 106 -SCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP--PRASPGGRPGS 162
+G G G SA ++G P PP PGP P PR G + S
Sbjct: 1092 PGATGPPGLPGIKGERGYTGSAGEKGEPG----PPGSEGL-PGPPGPAGPRGERGPQGNS 1146
Query: 163 EARGRSGAECARRVPLHHGPPGASGV-------GSERDRKFQLHQTPARGPPFPGISGMT 215
+G G + P GPPG G G + ++ + + P+ P PG G
Sbjct: 1147 GEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPP 1206
Query: 216 --RGPVVLSGVNRQHRWP-----PGASPSRSL-------------------GEAGGERPA 249
+GP L G++ + P PG + L G+ G P
Sbjct: 1207 GIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPP 1266
Query: 250 RALRRPRAPGRAGGGGPPGGGIPACSIG-------PGLARLAALG 287
+ RP A G G GP G P +G PG A ++A+G
Sbjct: 1267 GSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVG 1311
Score = 55.1 bits (131), Expect = 8e-08
Identities = 70/252 (27%), Positives = 89/252 (35%), Gaps = 28/252 (11%)
Query: 74 PPPPGGPSRSERPRAGLR-----PGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQ 128
P PPG ++ +AG R G +PG G + +GR G +G A +
Sbjct: 661 PGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGT-TGRPGLSGEPGVQGPAGPKGE 719
Query: 129 RGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGV 188
+G A P T + P + P G G E GR G +P GPPG GV
Sbjct: 720 KGDGCTA-CPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGV 778
Query: 189 GSE---RDRKFQLHQTPARGPPFPGISGM--TRGPVVLSGVNRQHR-----------WPP 232
E R Q Q P PGI G+ RGP +G PP
Sbjct: 779 QGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPP 838
Query: 233 GASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSI-GPGLARLAALGGLPS 291
GAS S G G + P G G G PG CS G + + G P
Sbjct: 839 GASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPG----ECSCPSQGDLIFSGMPGAPG 894
Query: 292 ILESSRLLPSPR 303
+ S P P+
Sbjct: 895 LWMGSSWQPGPQ 906
Score = 54.3 bits (129), Expect = 1e-07
Identities = 75/262 (28%), Positives = 96/262 (36%), Gaps = 43/262 (16%)
Query: 55 GAPGSPLYRVSAPPP----APPPPPPPGGPS-------------RSERPRAGLRPGAFVS 97
G PG P R PP +P PP P G P + ER GL G
Sbjct: 1024 GPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGL-TGDKGE 1082
Query: 98 PGPLGRRA--SCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP--PR 153
PGP G+ +G G G SA ++G P PP PGP P PR
Sbjct: 1083 PGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPG----PPGSEGL-PGPPGPAGPR 1137
Query: 154 ASPGGRPGSEARGRSGAECARRVPLHHGPPGASG-------VGSERDRKFQLHQTPARGP 206
G + S +G G + P GPPG G G + ++ + + P+ P
Sbjct: 1138 GERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLP 1197
Query: 207 PFPGISGM--TRGPVVLSGVNRQH-----RWPPG-ASPSRSLGEAGGERPARALRRPRAP 258
PG G +GP L G++ + R PG A P +G G + P
Sbjct: 1198 GSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPK 1257
Query: 259 GRAGGGGPPGG-GIPACSIGPG 279
G G GPPG G P PG
Sbjct: 1258 GDCGKPGPPGSTGRPGAEGEPG 1279
Score = 52.0 bits (123), Expect = 7e-07
Identities = 82/298 (27%), Positives = 97/298 (32%), Gaps = 79/298 (26%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP-LYRV 64
GP+ G T ++GR + G G + P G G PG P L V
Sbjct: 715 GPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGE-----QGPEGVGRPGKPGQPGLPGV 769
Query: 65 SAPP-----PAPPPPP------PPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGS 113
PP P PP P G P P PG PGP G + + G G
Sbjct: 770 QGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGA-QGSPGV 828
Query: 114 AGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECA 173
G + GP PP AS G PG + G+ G
Sbjct: 829 KG-----------------------------ATGPVGPPGASVSGPPGRD--GQQGQTGL 857
Query: 174 RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
R P GP G G E P++G SGM P + G + W PG
Sbjct: 858 RGTPGEKGPRGEKGEPGE-------CSCPSQGDLI--FSGMPGAPGLWMGSS----WQPG 904
Query: 234 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 290
G G P P PG G G PG G+P PGL A LG LP
Sbjct: 905 PQ-----GPPGIPGP------PGPPGVPGLQGVPGNNGLPG---QPGLT--AELGSLP 946
Score = 50.8 bits (120), Expect = 1e-06
Identities = 76/295 (25%), Positives = 99/295 (33%), Gaps = 74/295 (25%)
Query: 30 GRADEEGAAGAGSKLWRRPRGAVS----AGAPGSPLYRVSAPPPAPPPPPPPGGPSRSER 85
G + G AG + + RGA AG PG P PP P PP PG + +
Sbjct: 1297 GPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQP-----GPPGHPGPPGEPGTDGAAGK 1351
Query: 86 PRAGLRPGAFVSPGPLGR--RASCSGRAGSAGRLRCSAAALSAAQRGGPARAQV-----P 138
+ G + PGP G A G+AG GR A GGP ++ P
Sbjct: 1352 EGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGR---------AGMPGGPGKSGSMGPVGP 1402
Query: 139 PALRTFSPGPASP-PRASPG--GRPGS--------------------------------- 162
P P +P P SPG G PGS
Sbjct: 1403 PGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRM 1462
Query: 163 -------EARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT 215
A GR G P G PG+ G+ + R+ + RG PG G
Sbjct: 1463 QFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRG--LPGTKG-E 1519
Query: 216 RGPVVLSGVNRQHRWP--PGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
+G + + G+ ++ P PG G+ G P P PG G G PG
Sbjct: 1520 KGDIGI-GIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPG 1573
Score = 50.1 bits (118), Expect = 3e-06
Identities = 71/252 (28%), Positives = 85/252 (33%), Gaps = 46/252 (18%)
Query: 53 SAGAPGSPLYRVSAPPPAP--PPPPPPGGPSRSERPRAGL----------RPGAFVSPGP 100
SAG G P PP + P PP P GP P+ +PG PGP
Sbjct: 1112 SAGEKGEP-----GPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGP 1166
Query: 101 LGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRAS-PGGR 159
G G+ GS G A S RG P+ SPGP PP P G
Sbjct: 1167 PG----FPGKVGSPGPPGPQAEKGSEGIRG--------PSGLPGSPGPPGPPGIQGPAGL 1214
Query: 160 PGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPV 219
G + G+ G R P GPPG G + + P PG G P
Sbjct: 1215 DGLD--GKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGH--------PGLPGPKGDCGKPG 1264
Query: 220 VLSGVNRQHRWPPGASPSR-SLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
R PGA ++G G P + P PG+ G G G+
Sbjct: 1265 PPGSTGR-----PGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGAT 1319
Query: 279 GLARLAALGGLP 290
G LA L G P
Sbjct: 1320 GERGLAGLPGQP 1331
Score = 47.0 bits (110), Expect = 2e-05
Identities = 73/301 (24%), Positives = 99/301 (32%), Gaps = 70/301 (23%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
G + G+ P + + G ++G G + P G AG PG P +
Sbjct: 405 GDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPG-----FVGPEGL--AGEPGPP--GLP 455
Query: 66 APPPA--PPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
PP P P PGGP PGP G + S SG G G
Sbjct: 456 GPPGIGLPGTPGDPGGP-----------------PGPKGDKGS-SGIPGKEGPGGKPGKP 497
Query: 124 LSAAQRGGPARA--QVPPALRTFSPGPASP-PRASPG------GRPGSEA----RGRSGA 170
++G P +P + F P P P+ PG G PG + +G
Sbjct: 498 GVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCL 557
Query: 171 ECARRVPLHH-------------------GPPGASGVGSERDRKFQLHQTPARGPPFPGI 211
C+ V H G PG +GV + K + G P P
Sbjct: 558 SCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPP- 616
Query: 212 SGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
GPV +G+ P P+ S + G R + P G G GPPG G+
Sbjct: 617 -----GPVGPAGIKGAKGEPCEPCPALSNLQDGD---VRVVALPGPSGEKGEPGPPGFGL 668
Query: 272 P 272
P
Sbjct: 669 P 669
Score = 32.3 bits (72), Expect = 0.54
Identities = 66/280 (23%), Positives = 86/280 (30%), Gaps = 49/280 (17%)
Query: 22 NEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS 81
+ LA SG +G G P GA G+ R+S P P G
Sbjct: 326 SNVTLAPSGPKGGKGERGLPGP----PGSKGEKGARGNDCVRISPDAPLQCAEGPKGEKG 381
Query: 82 RSERPRAGLRPGAFVSPGPLGRRAS-----CSGRAGSAGRLRCSAAALSAAQRGGPARAQ 136
S PG+ G G + G+ G GR Q+G P
Sbjct: 382 ESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGF-- 439
Query: 137 VPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKF 196
V P PGP P G PG+ G G P G G+SG+ +
Sbjct: 440 VGPEGLAGEPGPPGLPGPPGIGLPGTP--GDPGGP-----PGPKGDKGSSGIPGK----- 487
Query: 197 QLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPR 256
+ P P PG+ G P + P G L
Sbjct: 488 ---EGPGGKPGKPGVKGEKGDPCEVCPT-----LPEGFQNFVGL---------------- 523
Query: 257 APGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESS 296
PG+ G G PG +PA PG+ + G P + SS
Sbjct: 524 -PGKPGPKGEPGDPVPARG-DPGIQGIKGEKGEPCLSCSS 561
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 64.7 bits (156), Expect = 1e-10
Identities = 91/284 (32%), Positives = 107/284 (37%), Gaps = 45/284 (15%)
Query: 37 AAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFV 96
A G G+K R RG +GA G P R PP P PP P GP+ P R G
Sbjct: 1591 AGGPGAKGPRGERGI--SGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKG 1648
Query: 97 SPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTF-----SPGPASP 151
G G GR G+ G GP PP R F + GP P
Sbjct: 1649 DAGEPG----LPGRTGTPG-------------LPGPPGPMGPPGDRGFTGKDGAMGPRGP 1691
Query: 152 PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGV-GSERDR----KFQLHQTPARGP 206
P P G PGS G +G P HG PG SG+ G + DR + + AR
Sbjct: 1692 P--GPPGSPGSP--GVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQV 1747
Query: 207 PFPGISG-MTRGPVVLSGV------NRQHRWPPGASPSRSLGEAGGERPARALRRPRAPG 259
ISG M R +L+ + +R PPG P G AG RP PG
Sbjct: 1748 CEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPG--PPGPPGSAGARGEPGPGGRPGFPG 1805
Query: 260 RAGGGGPPG-GGIPA--CSIGPGLARLAALGGLPSILESSRLLP 300
G GPPG G+P G G + L G P SR P
Sbjct: 1806 TPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGP 1849
Score = 54.7 bits (130), Expect = 1e-07
Identities = 72/266 (27%), Positives = 94/266 (35%), Gaps = 61/266 (22%)
Query: 28 ISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLY--RVSAPPPAPPPPPP--PGGPSR 82
+ G A E G G G+ P G + G PG + + A P PP PP PG P
Sbjct: 1646 MKGDAGEPGLPGRTGTPGLPGPPGPM--GPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGV 1703
Query: 83 SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQ--------RGGPAR 134
+ +PG PGP G + R A + A A + R
Sbjct: 1704 TGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMNRFNQML 1763
Query: 135 AQVPPALRTFS-----PGPASPPRAS-------PGGRPGSEARGRSGAECARRVPLHHGP 182
Q+P ++ PGP PP ++ PGGRPG P GP
Sbjct: 1764 NQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPG-----------TPGMQGP 1812
Query: 183 PGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 242
PG G+ E+ + P P PG G +R PPG++ SR G
Sbjct: 1813 PGERGLPGEKGERGTGSSGPRGLPGPPGPQGESR------------TGPPGSTGSR--GP 1858
Query: 243 AGGERPARALRRPRAPGRAGGGGPPG 268
G P PG +G GPPG
Sbjct: 1859 PG---------PPGRPGNSGIRGPPG 1875
Score = 45.1 bits (105), Expect = 8e-05
Identities = 48/153 (31%), Positives = 54/153 (35%), Gaps = 29/153 (18%)
Query: 62 YRVSAPPPAPP-PPPPPGGPSRSERPRAGLRPGAFVSP---GPLGRRASCSGRAGSAGRL 117
Y+ S P PP PP PPG P G RPG +P GP G R G G G
Sbjct: 1770 YQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-GLPGEKGERGTG 1828
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVP 177
L G ++ P T S GP PP GRPG+ SG
Sbjct: 1829 SSGPRGLPGPP-GPQGESRTGPPGSTGSRGPPGPP-----GRPGN-----SGI------- 1870
Query: 178 LHHGPPGASGVGSERDRKFQLHQTPARGPPFPG 210
GPPG G Q P G +PG
Sbjct: 1871 --RGPPGPPGYCDSS----QCASIPYNGQGYPG 1897
Score = 33.1 bits (74), Expect = 0.32
Identities = 23/83 (27%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP G TP + G E G +G + P G G P S
Sbjct: 1796 GPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGS 1855
Query: 66 APPPAPP----------PPPPPG 78
PP PP PP PPG
Sbjct: 1856 RGPPGPPGRPGNSGIRGPPGPPG 1878
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 64.7 bits (156), Expect = 1e-10
Identities = 91/284 (32%), Positives = 107/284 (37%), Gaps = 45/284 (15%)
Query: 37 AAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFV 96
A G G+K R RG +GA G P R PP P PP P GP+ P R G
Sbjct: 2755 AGGPGAKGPRGERGI--SGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKG 2812
Query: 97 SPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTF-----SPGPASP 151
G G GR G+ G GP PP R F + GP P
Sbjct: 2813 DAGEPG----LPGRTGTPG-------------LPGPPGPMGPPGDRGFTGKDGAMGPRGP 2855
Query: 152 PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGV-GSERDR----KFQLHQTPARGP 206
P P G PGS G +G P HG PG SG+ G + DR + + AR
Sbjct: 2856 P--GPPGSPGSP--GVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQV 2911
Query: 207 PFPGISG-MTRGPVVLSGV------NRQHRWPPGASPSRSLGEAGGERPARALRRPRAPG 259
ISG M R +L+ + +R PPG P G AG RP PG
Sbjct: 2912 CEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPG--PPGPPGSAGARGEPGPGGRPGFPG 2969
Query: 260 RAGGGGPPG-GGIPA--CSIGPGLARLAALGGLPSILESSRLLP 300
G GPPG G+P G G + L G P SR P
Sbjct: 2970 TPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGP 3013
Score = 54.7 bits (130), Expect = 1e-07
Identities = 72/266 (27%), Positives = 94/266 (35%), Gaps = 61/266 (22%)
Query: 28 ISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLY--RVSAPPPAPPPPPP--PGGPSR 82
+ G A E G G G+ P G + G PG + + A P PP PP PG P
Sbjct: 2810 MKGDAGEPGLPGRTGTPGLPGPPGPM--GPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGV 2867
Query: 83 SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQ--------RGGPAR 134
+ +PG PGP G + R A + A A + R
Sbjct: 2868 TGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMNRFNQML 2927
Query: 135 AQVPPALRTFS-----PGPASPPRAS-------PGGRPGSEARGRSGAECARRVPLHHGP 182
Q+P ++ PGP PP ++ PGGRPG P GP
Sbjct: 2928 NQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPG-----------TPGMQGP 2976
Query: 183 PGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 242
PG G+ E+ + P P PG G +R PPG++ SR G
Sbjct: 2977 PGERGLPGEKGERGTGSSGPRGLPGPPGPQGESR------------TGPPGSTGSR--GP 3022
Query: 243 AGGERPARALRRPRAPGRAGGGGPPG 268
G P PG +G GPPG
Sbjct: 3023 PG---------PPGRPGNSGIRGPPG 3039
Score = 45.1 bits (105), Expect = 8e-05
Identities = 48/153 (31%), Positives = 54/153 (35%), Gaps = 29/153 (18%)
Query: 62 YRVSAPPPAPP-PPPPPGGPSRSERPRAGLRPGAFVSP---GPLGRRASCSGRAGSAGRL 117
Y+ S P PP PP PPG P G RPG +P GP G R G G G
Sbjct: 2934 YQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-GLPGEKGERGTG 2992
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVP 177
L G ++ P T S GP PP GRPG+ SG
Sbjct: 2993 SSGPRGLPGPP-GPQGESRTGPPGSTGSRGPPGPP-----GRPGN-----SGI------- 3034
Query: 178 LHHGPPGASGVGSERDRKFQLHQTPARGPPFPG 210
GPPG G Q P G +PG
Sbjct: 3035 --RGPPGPPGYCDSS----QCASIPYNGQGYPG 3061
Score = 33.1 bits (74), Expect = 0.32
Identities = 23/83 (27%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP G TP + G E G +G + P G G P S
Sbjct: 2960 GPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGS 3019
Query: 66 APPPAPP----------PPPPPG 78
PP PP PP PPG
Sbjct: 3020 RGPPGPPGRPGNSGIRGPPGPPG 3042
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 64.7 bits (156), Expect = 1e-10
Identities = 93/326 (28%), Positives = 118/326 (36%), Gaps = 74/326 (22%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVS----AGAPGSP 60
GP G Q P N G E G+ G G + PRG +G PG P
Sbjct: 1103 GPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEP 1162
Query: 61 LYRVSAPP--------------------PAPPPPPPPGGP-----SRSERPRAGLRPGAF 95
PP P P PP GGP ++ +R G PG
Sbjct: 1163 -----GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDG-EPGQP 1216
Query: 96 VSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT-FSPGPASPPRA 154
SPGP G +G G G+ + + S ++GG P A+ GP P A
Sbjct: 1217 GSPGPTGE----NGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGP--A 1270
Query: 155 SPGGRPGSEA----------RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPAR 204
P G+PG + +GR GA P GPPG G+ + K +
Sbjct: 1271 GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGE------- 1323
Query: 205 GPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGG 264
PG+ G+ GP G + R PG P S G+ G + P A G G G
Sbjct: 1324 -KGHPGLIGLI-GPPGEQG-EKGDRGLPG--PQGSPGQKG------EMGIPGASGPIGPG 1372
Query: 265 GPPGGGIPACSIGPGLARLAALGGLP 290
GPPG PA GP A+ A G P
Sbjct: 1373 GPPGLPGPA---GPKGAKGATGPGGP 1395
Score = 62.0 bits (149), Expect = 6e-10
Identities = 86/275 (31%), Positives = 104/275 (37%), Gaps = 44/275 (16%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GPR L G + PA E + + G EG AG +
Sbjct: 291 GPRGLKGEKGEPAVL--EPGMLVEGPPGPEGPAG------------------------LI 324
Query: 66 APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
PP P P G P P RAGL PG+ +PGP G R GS G + A
Sbjct: 325 GPPGIQGNPGPVGDPGERGPPGRAGL-PGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAA 383
Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
AQ + Q ALR PGP R P G+PGS + + P GP
Sbjct: 384 QEAQAQAILQ-QARLALRG-PPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP--RGPQ 439
Query: 184 GASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHRWPPGA----SP 236
G +G + R+ + ARG P PG+ G RG L G+ + HR GA P
Sbjct: 440 GLTGPPGKAGRRGRAGADGARGMPGDPGVKG-DRGFDGLPGLPGEKGHRGDTGAQGLPGP 498
Query: 237 SRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
GE G GE R L P G G GPPG
Sbjct: 499 PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPG 533
Score = 60.1 bits (144), Expect = 2e-09
Identities = 77/279 (27%), Positives = 98/279 (35%), Gaps = 45/279 (16%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-AGAPGSPLYR 63
GP+ G P A + A +SG++ G G G + R PRGA +GA G+
Sbjct: 722 GPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 781
Query: 64 VSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
PP P P GP+ P+ PGP G+ G G G+
Sbjct: 782 GPHGPPGERGLPGPQGPNGFPGPKG--------PPGPPGK----DGLPGHPGQ------- 822
Query: 124 LSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
R +V +T PGP P P G A G +G R P GPP
Sbjct: 823 ----------RGEVGFQGKTGPPGP--PGVVGPQG-----AAGETGPMGERGHPGPPGPP 865
Query: 184 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
G G+ ++ +G P P + GP L G + P A G
Sbjct: 866 GEQGLPGTAGKE------GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 919
Query: 244 GGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
G P P G AG GGP G G P PG A
Sbjct: 920 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAA 958
Score = 59.7 bits (143), Expect = 3e-09
Identities = 76/266 (28%), Positives = 94/266 (35%), Gaps = 35/266 (13%)
Query: 23 EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGP-S 81
+ + + G A G AG +G V G PG + + PP PP P GP
Sbjct: 979 QGPVGLPGPAGPPGVAGEDGD-----KGEV--GDPGQKGTKGNKGEHGPPGPPGPIGPVG 1031
Query: 82 RSERPRAGLRPGAFVSPGPLGRRASCSGRA--GSAGRLRCSAAALSAAQRG-----GPAR 134
+ A PGA G G + R G G + + ++G GP
Sbjct: 1032 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMG 1091
Query: 135 AQVPPALRTFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVG 189
PP R GPA P P+ PGG G G P G PG G
Sbjct: 1092 PPGPPGPR----GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1147
Query: 190 SERDRKFQLHQTPARGPPFP-GISG-----MTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
ER K + Q GPP P G +G GPV G PPG R A
Sbjct: 1148 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG----DPGPPGEGGPRGQDGA 1203
Query: 244 GGERPARA-LRRPRAPGRAGGGGPPG 268
G+R +P +PG G GPPG
Sbjct: 1204 KGDRGEDGEPGQPGSPGPTGENGPPG 1229
Score = 58.2 bits (139), Expect = 9e-09
Identities = 78/266 (29%), Positives = 93/266 (34%), Gaps = 32/266 (12%)
Query: 30 GRADEEGAAGAGSKLWRR-----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS--R 82
G +GAAG + R P G PG+ + P PP P GP+ R
Sbjct: 839 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLR 898
Query: 83 SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALR 142
GL PG PG G SG G AG S AA GGP PP
Sbjct: 899 GFPGERGL-PGTAGGPGLKGNEGP-SGPPGPAG----SPGERGAAGSGGPIG---PPG-- 947
Query: 143 TFSPGPASPPRAS-----PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQ 197
PGP PP A+ PG + GR G + +P GPPG +G ++
Sbjct: 948 --RPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGD 1005
Query: 198 LHQTPARGPPF----PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALR 253
Q +G PG G GPV G P P G A G+ R
Sbjct: 1006 PGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGARGPQGHFG-AKGDEGTRGFN 1063
Query: 254 RPRAP-GRAGGGGPPGGGIPACSIGP 278
P P G G GP G +GP
Sbjct: 1064 GPPGPIGLQGLPGPSGEKGETGDVGP 1089
Score = 53.9 bits (128), Expect = 2e-07
Identities = 85/307 (27%), Positives = 107/307 (34%), Gaps = 65/307 (21%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSA-GAPGSPLYR 63
GP G P A + G GA G G++ + P G + G PG +
Sbjct: 1022 GPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1081
Query: 64 VSAP------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL 117
PP PP P P GP+ ++ P+ PG + GP G + G +GS G
Sbjct: 1082 GETGDVGPMGPPGPPGPRGPAGPNGADGPQGP--PGGVGNLGPPGEKGE-PGESGSPGIQ 1138
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASP-----PRASPG--------GRPGSEA 164
+RG + P PGP P P+ +PG G PG
Sbjct: 1139 GEPGVKGPRGERGEKGESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1196
Query: 165 -RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
RG+ GA+ R G PG+ G E GPP GP+ G
Sbjct: 1197 PRGQDGAKGDRGEDGEPGQPGSPGPTGEN------------GPP---------GPLGKRG 1235
Query: 224 VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
P SP S G GG+ A P A G G GP G PA GP
Sbjct: 1236 --------PAGSPG-SEGRQGGKG---AKGDPGAIGAPGKTGPVGPAGPAGKPGPD---- 1279
Query: 284 AALGGLP 290
L GLP
Sbjct: 1280 -GLRGLP 1285
Score = 46.6 bits (109), Expect = 3e-05
Identities = 77/297 (25%), Positives = 93/297 (31%), Gaps = 69/297 (23%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP+ G Q P + G +GA G P G G G P
Sbjct: 548 GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG--------PHG--EKGPQGKP----- 592
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA-----------SCSGRAGSA 114
P P PPG P + P G GPLG G G
Sbjct: 593 GLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 652
Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP-RASPGGRPGSEA----RGRSG 169
G +G VP + GP P R P G PG +G+ G
Sbjct: 653 GEDGFPGFKGDIGVKGDRGEVGVPGS--RGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLG 710
Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN---- 225
P GP G+ G P FPG SG +G LSG +
Sbjct: 711 VPGLPGYPGRQGPKGSLGF-----------------PGFPGASG-EKGARGLSGKSGPRG 752
Query: 226 -------RQHRWPPGAS-PSRSLGEAGGERP-----ARALRRPRAP-GRAGGGGPPG 268
R R P GA+ S + G +GG+ P R L P+ P G G GPPG
Sbjct: 753 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG 809
Score = 46.2 bits (108), Expect = 4e-05
Identities = 55/184 (29%), Positives = 66/184 (35%), Gaps = 26/184 (14%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----SAGAPGSPLYRVSAP 67
G Q A + A+ G+ G AG K P G S G G P A
Sbjct: 1244 GRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK--PGPDGLRGLPGSVGQQGRPGATGQAG 1301
Query: 68 PPAPPPPPP-PG----GPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRLRCS 120
PP P PP PG ++ E+ GL G PG G + G GS G+
Sbjct: 1302 PPGPVGPPGLPGLRGDAGAKGEKGHPGLI-GLIGPPGEQGEKGDRGLPGPQGSPGQ---- 1356
Query: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
+ GP PP L PGPA P A PG G G + + P H
Sbjct: 1357 KGEMGIPGASGPIGPGGPPGL----PGPAGPKGAKGATGPG----GPKGEKGVQGPPGHP 1408
Query: 181 GPPG 184
GPPG
Sbjct: 1409 GPPG 1412
Score = 28.5 bits (62), Expect = 7.9
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR-- 63
G R L G Q +P SG G G P+GA A PG P
Sbjct: 1343 GDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG--PKGAKGATGPGGPKGEKG 1400
Query: 64 VSAPPPAPPPP 74
V PP P PP
Sbjct: 1401 VQGPPGHPGPP 1411
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 64.7 bits (156), Expect = 1e-10
Identities = 93/326 (28%), Positives = 118/326 (36%), Gaps = 74/326 (22%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVS----AGAPGSP 60
GP G Q P N G E G+ G G + PRG +G PG P
Sbjct: 1082 GPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEP 1141
Query: 61 LYRVSAPP--------------------PAPPPPPPPGGP-----SRSERPRAGLRPGAF 95
PP P P PP GGP ++ +R G PG
Sbjct: 1142 -----GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDG-EPGQP 1195
Query: 96 VSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT-FSPGPASPPRA 154
SPGP G +G G G+ + + S ++GG P A+ GP P A
Sbjct: 1196 GSPGPTGE----NGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGP--A 1249
Query: 155 SPGGRPGSEA----------RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPAR 204
P G+PG + +GR GA P GPPG G+ + K +
Sbjct: 1250 GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGE------- 1302
Query: 205 GPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGG 264
PG+ G+ GP G + R PG P S G+ G + P A G G G
Sbjct: 1303 -KGHPGLIGLI-GPPGEQG-EKGDRGLPG--PQGSPGQKG------EMGIPGASGPIGPG 1351
Query: 265 GPPGGGIPACSIGPGLARLAALGGLP 290
GPPG PA GP A+ A G P
Sbjct: 1352 GPPGLPGPA---GPKGAKGATGPGGP 1374
Score = 62.0 bits (149), Expect = 6e-10
Identities = 86/275 (31%), Positives = 104/275 (37%), Gaps = 44/275 (16%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GPR L G + PA E + + G EG AG +
Sbjct: 270 GPRGLKGEKGEPAVL--EPGMLVEGPPGPEGPAG------------------------LI 303
Query: 66 APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
PP P P G P P RAGL PG+ +PGP G R GS G + A
Sbjct: 304 GPPGIQGNPGPVGDPGERGPPGRAGL-PGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAA 362
Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
AQ + Q ALR PGP R P G+PGS + + P GP
Sbjct: 363 QEAQAQAILQ-QARLALRG-PPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP--RGPQ 418
Query: 184 GASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHRWPPGA----SP 236
G +G + R+ + ARG P PG+ G RG L G+ + HR GA P
Sbjct: 419 GLTGPPGKAGRRGRAGADGARGMPGDPGVKG-DRGFDGLPGLPGEKGHRGDTGAQGLPGP 477
Query: 237 SRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
GE G GE R L P G G GPPG
Sbjct: 478 PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPG 512
Score = 60.1 bits (144), Expect = 2e-09
Identities = 77/279 (27%), Positives = 98/279 (35%), Gaps = 45/279 (16%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-AGAPGSPLYR 63
GP+ G P A + A +SG++ G G G + R PRGA +GA G+
Sbjct: 701 GPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 760
Query: 64 VSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
PP P P GP+ P+ PGP G+ G G G+
Sbjct: 761 GPHGPPGERGLPGPQGPNGFPGPKG--------PPGPPGK----DGLPGHPGQ------- 801
Query: 124 LSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
R +V +T PGP P P G A G +G R P GPP
Sbjct: 802 ----------RGEVGFQGKTGPPGP--PGVVGPQG-----AAGETGPMGERGHPGPPGPP 844
Query: 184 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
G G+ ++ +G P P + GP L G + P A G
Sbjct: 845 GEQGLPGTAGKE------GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 898
Query: 244 GGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
G P P G AG GGP G G P PG A
Sbjct: 899 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAA 937
Score = 59.7 bits (143), Expect = 3e-09
Identities = 76/266 (28%), Positives = 94/266 (35%), Gaps = 35/266 (13%)
Query: 23 EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGP-S 81
+ + + G A G AG +G V G PG + + PP PP P GP
Sbjct: 958 QGPVGLPGPAGPPGVAGEDGD-----KGEV--GDPGQKGTKGNKGEHGPPGPPGPIGPVG 1010
Query: 82 RSERPRAGLRPGAFVSPGPLGRRASCSGRA--GSAGRLRCSAAALSAAQRG-----GPAR 134
+ A PGA G G + R G G + + ++G GP
Sbjct: 1011 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMG 1070
Query: 135 AQVPPALRTFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVG 189
PP R GPA P P+ PGG G G P G PG G
Sbjct: 1071 PPGPPGPR----GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1126
Query: 190 SERDRKFQLHQTPARGPPFP-GISG-----MTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
ER K + Q GPP P G +G GPV G PPG R A
Sbjct: 1127 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG----DPGPPGEGGPRGQDGA 1182
Query: 244 GGERPARA-LRRPRAPGRAGGGGPPG 268
G+R +P +PG G GPPG
Sbjct: 1183 KGDRGEDGEPGQPGSPGPTGENGPPG 1208
Score = 58.2 bits (139), Expect = 9e-09
Identities = 78/266 (29%), Positives = 93/266 (34%), Gaps = 32/266 (12%)
Query: 30 GRADEEGAAGAGSKLWRR-----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS--R 82
G +GAAG + R P G PG+ + P PP P GP+ R
Sbjct: 818 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLR 877
Query: 83 SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALR 142
GL PG PG G SG G AG S AA GGP PP
Sbjct: 878 GFPGERGL-PGTAGGPGLKGNEGP-SGPPGPAG----SPGERGAAGSGGPIG---PPG-- 926
Query: 143 TFSPGPASPPRAS-----PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQ 197
PGP PP A+ PG + GR G + +P GPPG +G ++
Sbjct: 927 --RPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGD 984
Query: 198 LHQTPARGPPF----PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALR 253
Q +G PG G GPV G P P G A G+ R
Sbjct: 985 PGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGARGPQGHFG-AKGDEGTRGFN 1042
Query: 254 RPRAP-GRAGGGGPPGGGIPACSIGP 278
P P G G GP G +GP
Sbjct: 1043 GPPGPIGLQGLPGPSGEKGETGDVGP 1068
Score = 53.9 bits (128), Expect = 2e-07
Identities = 85/307 (27%), Positives = 107/307 (34%), Gaps = 65/307 (21%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSA-GAPGSPLYR 63
GP G P A + G GA G G++ + P G + G PG +
Sbjct: 1001 GPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1060
Query: 64 VSAP------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL 117
PP PP P P GP+ ++ P+ PG + GP G + G +GS G
Sbjct: 1061 GETGDVGPMGPPGPPGPRGPAGPNGADGPQGP--PGGVGNLGPPGEKGE-PGESGSPGIQ 1117
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASP-----PRASPG--------GRPGSEA 164
+RG + P PGP P P+ +PG G PG
Sbjct: 1118 GEPGVKGPRGERGEKGESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1175
Query: 165 -RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
RG+ GA+ R G PG+ G E GPP GP+ G
Sbjct: 1176 PRGQDGAKGDRGEDGEPGQPGSPGPTGEN------------GPP---------GPLGKRG 1214
Query: 224 VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
P SP S G GG+ A P A G G GP G PA GP
Sbjct: 1215 --------PAGSPG-SEGRQGGKG---AKGDPGAIGAPGKTGPVGPAGPAGKPGPD---- 1258
Query: 284 AALGGLP 290
L GLP
Sbjct: 1259 -GLRGLP 1264
Score = 46.6 bits (109), Expect = 3e-05
Identities = 77/297 (25%), Positives = 93/297 (31%), Gaps = 69/297 (23%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP+ G Q P + G +GA G P G G G P
Sbjct: 527 GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG--------PHG--EKGPQGKP----- 571
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA-----------SCSGRAGSA 114
P P PPG P + P G GPLG G G
Sbjct: 572 GLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 631
Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP-RASPGGRPGSEA----RGRSG 169
G +G VP + GP P R P G PG +G+ G
Sbjct: 632 GEDGFPGFKGDIGVKGDRGEVGVPGS--RGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLG 689
Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN---- 225
P GP G+ G P FPG SG +G LSG +
Sbjct: 690 VPGLPGYPGRQGPKGSLGF-----------------PGFPGASG-EKGARGLSGKSGPRG 731
Query: 226 -------RQHRWPPGAS-PSRSLGEAGGERP-----ARALRRPRAP-GRAGGGGPPG 268
R R P GA+ S + G +GG+ P R L P+ P G G GPPG
Sbjct: 732 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG 788
Score = 46.2 bits (108), Expect = 4e-05
Identities = 55/184 (29%), Positives = 66/184 (35%), Gaps = 26/184 (14%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----SAGAPGSPLYRVSAP 67
G Q A + A+ G+ G AG K P G S G G P A
Sbjct: 1223 GRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK--PGPDGLRGLPGSVGQQGRPGATGQAG 1280
Query: 68 PPAPPPPPP-PG----GPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRLRCS 120
PP P PP PG ++ E+ GL G PG G + G GS G+
Sbjct: 1281 PPGPVGPPGLPGLRGDAGAKGEKGHPGLI-GLIGPPGEQGEKGDRGLPGPQGSPGQ---- 1335
Query: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
+ GP PP L PGPA P A PG G G + + P H
Sbjct: 1336 KGEMGIPGASGPIGPGGPPGL----PGPAGPKGAKGATGPG----GPKGEKGVQGPPGHP 1387
Query: 181 GPPG 184
GPPG
Sbjct: 1388 GPPG 1391
Score = 28.5 bits (62), Expect = 7.9
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR-- 63
G R L G Q +P SG G G P+GA A PG P
Sbjct: 1322 GDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG--PKGAKGATGPGGPKGEKG 1379
Query: 64 VSAPPPAPPPP 74
V PP P PP
Sbjct: 1380 VQGPPGHPGPP 1390
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 64.7 bits (156), Expect = 1e-10
Identities = 93/326 (28%), Positives = 118/326 (36%), Gaps = 74/326 (22%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVS----AGAPGSP 60
GP G Q P N G E G+ G G + PRG +G PG P
Sbjct: 1189 GPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEP 1248
Query: 61 LYRVSAPP--------------------PAPPPPPPPGGP-----SRSERPRAGLRPGAF 95
PP P P PP GGP ++ +R G PG
Sbjct: 1249 -----GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDG-EPGQP 1302
Query: 96 VSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT-FSPGPASPPRA 154
SPGP G +G G G+ + + S ++GG P A+ GP P A
Sbjct: 1303 GSPGPTGE----NGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGP--A 1356
Query: 155 SPGGRPGSEA----------RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPAR 204
P G+PG + +GR GA P GPPG G+ + K +
Sbjct: 1357 GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGE------- 1409
Query: 205 GPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGG 264
PG+ G+ GP G + R PG P S G+ G + P A G G G
Sbjct: 1410 -KGHPGLIGLI-GPPGEQG-EKGDRGLPG--PQGSPGQKG------EMGIPGASGPIGPG 1458
Query: 265 GPPGGGIPACSIGPGLARLAALGGLP 290
GPPG PA GP A+ A G P
Sbjct: 1459 GPPGLPGPA---GPKGAKGATGPGGP 1481
Score = 62.8 bits (151), Expect = 4e-10
Identities = 87/279 (31%), Positives = 106/279 (37%), Gaps = 44/279 (15%)
Query: 2 AISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPL 61
A + GPR L G + PA E + + G EG AG
Sbjct: 373 AAAHGPRGLKGEKGEPAVL--EPGMLVEGPPGPEGPAG---------------------- 408
Query: 62 YRVSAPPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
+ PP P P G P P RAGL PG+ +PGP G R GS G +
Sbjct: 409 --LIGPPGIQGNPGPVGDPGERGPPGRAGL-PGSDGAPGPPGTSLMLPFRFGSGGGDKGP 465
Query: 121 AAALSAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLH 179
A AQ + Q ALR PGP R P G+PGS + + P
Sbjct: 466 VVAAQEAQAQAILQ-QARLALRG-PPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP-- 521
Query: 180 HGPPGASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHRWPPGA-- 234
GP G +G + R+ + ARG P PG+ G RG L G+ + HR GA
Sbjct: 522 RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKG-DRGFDGLPGLPGEKGHRGDTGAQG 580
Query: 235 --SPSRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
P GE G GE R L P G G GPPG
Sbjct: 581 LPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPG 619
Score = 60.1 bits (144), Expect = 2e-09
Identities = 77/279 (27%), Positives = 98/279 (35%), Gaps = 45/279 (16%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-AGAPGSPLYR 63
GP+ G P A + A +SG++ G G G + R PRGA +GA G+
Sbjct: 808 GPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 867
Query: 64 VSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
PP P P GP+ P+ PGP G+ G G G+
Sbjct: 868 GPHGPPGERGLPGPQGPNGFPGPKG--------PPGPPGK----DGLPGHPGQ------- 908
Query: 124 LSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
R +V +T PGP P P G A G +G R P GPP
Sbjct: 909 ----------RGEVGFQGKTGPPGP--PGVVGPQG-----AAGETGPMGERGHPGPPGPP 951
Query: 184 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
G G+ ++ +G P P + GP L G + P A G
Sbjct: 952 GEQGLPGTAGKE------GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 1005
Query: 244 GGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
G P P G AG GGP G G P PG A
Sbjct: 1006 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAA 1044
Score = 59.7 bits (143), Expect = 3e-09
Identities = 76/266 (28%), Positives = 94/266 (35%), Gaps = 35/266 (13%)
Query: 23 EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGP-S 81
+ + + G A G AG +G V G PG + + PP PP P GP
Sbjct: 1065 QGPVGLPGPAGPPGVAGEDGD-----KGEV--GDPGQKGTKGNKGEHGPPGPPGPIGPVG 1117
Query: 82 RSERPRAGLRPGAFVSPGPLGRRASCSGRA--GSAGRLRCSAAALSAAQRG-----GPAR 134
+ A PGA G G + R G G + + ++G GP
Sbjct: 1118 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMG 1177
Query: 135 AQVPPALRTFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVG 189
PP R GPA P P+ PGG G G P G PG G
Sbjct: 1178 PPGPPGPR----GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1233
Query: 190 SERDRKFQLHQTPARGPPFP-GISG-----MTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
ER K + Q GPP P G +G GPV G PPG R A
Sbjct: 1234 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG----DPGPPGEGGPRGQDGA 1289
Query: 244 GGERPARA-LRRPRAPGRAGGGGPPG 268
G+R +P +PG G GPPG
Sbjct: 1290 KGDRGEDGEPGQPGSPGPTGENGPPG 1315
Score = 58.2 bits (139), Expect = 9e-09
Identities = 78/266 (29%), Positives = 93/266 (34%), Gaps = 32/266 (12%)
Query: 30 GRADEEGAAGAGSKLWRR-----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS--R 82
G +GAAG + R P G PG+ + P PP P GP+ R
Sbjct: 925 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLR 984
Query: 83 SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALR 142
GL PG PG G SG G AG S AA GGP PP
Sbjct: 985 GFPGERGL-PGTAGGPGLKGNEGP-SGPPGPAG----SPGERGAAGSGGPIG---PPG-- 1033
Query: 143 TFSPGPASPPRAS-----PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQ 197
PGP PP A+ PG + GR G + +P GPPG +G ++
Sbjct: 1034 --RPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGD 1091
Query: 198 LHQTPARGPPF----PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALR 253
Q +G PG G GPV G P P G A G+ R
Sbjct: 1092 PGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGARGPQGHFG-AKGDEGTRGFN 1149
Query: 254 RPRAP-GRAGGGGPPGGGIPACSIGP 278
P P G G GP G +GP
Sbjct: 1150 GPPGPIGLQGLPGPSGEKGETGDVGP 1175
Score = 53.9 bits (128), Expect = 2e-07
Identities = 85/307 (27%), Positives = 107/307 (34%), Gaps = 65/307 (21%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSA-GAPGSPLYR 63
GP G P A + G GA G G++ + P G + G PG +
Sbjct: 1108 GPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1167
Query: 64 VSAP------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL 117
PP PP P P GP+ ++ P+ PG + GP G + G +GS G
Sbjct: 1168 GETGDVGPMGPPGPPGPRGPAGPNGADGPQGP--PGGVGNLGPPGEKGE-PGESGSPGIQ 1224
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASP-----PRASPG--------GRPGSEA 164
+RG + P PGP P P+ +PG G PG
Sbjct: 1225 GEPGVKGPRGERGEKGESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1282
Query: 165 -RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
RG+ GA+ R G PG+ G E GPP GP+ G
Sbjct: 1283 PRGQDGAKGDRGEDGEPGQPGSPGPTGEN------------GPP---------GPLGKRG 1321
Query: 224 VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
P SP S G GG+ A P A G G GP G PA GP
Sbjct: 1322 --------PAGSPG-SEGRQGGKG---AKGDPGAIGAPGKTGPVGPAGPAGKPGPD---- 1365
Query: 284 AALGGLP 290
L GLP
Sbjct: 1366 -GLRGLP 1371
Score = 46.6 bits (109), Expect = 3e-05
Identities = 77/297 (25%), Positives = 93/297 (31%), Gaps = 69/297 (23%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP+ G Q P + G +GA G P G G G P
Sbjct: 634 GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG--------PHG--EKGPQGKP----- 678
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA-----------SCSGRAGSA 114
P P PPG P + P G GPLG G G
Sbjct: 679 GLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 738
Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP-RASPGGRPGSEA----RGRSG 169
G +G VP + GP P R P G PG +G+ G
Sbjct: 739 GEDGFPGFKGDIGVKGDRGEVGVPGS--RGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLG 796
Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN---- 225
P GP G+ G P FPG SG +G LSG +
Sbjct: 797 VPGLPGYPGRQGPKGSLGF-----------------PGFPGASG-EKGARGLSGKSGPRG 838
Query: 226 -------RQHRWPPGAS-PSRSLGEAGGERP-----ARALRRPRAP-GRAGGGGPPG 268
R R P GA+ S + G +GG+ P R L P+ P G G GPPG
Sbjct: 839 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG 895
Score = 46.2 bits (108), Expect = 4e-05
Identities = 55/184 (29%), Positives = 66/184 (35%), Gaps = 26/184 (14%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----SAGAPGSPLYRVSAP 67
G Q A + A+ G+ G AG K P G S G G P A
Sbjct: 1330 GRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK--PGPDGLRGLPGSVGQQGRPGATGQAG 1387
Query: 68 PPAPPPPPP-PG----GPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRLRCS 120
PP P PP PG ++ E+ GL G PG G + G GS G+
Sbjct: 1388 PPGPVGPPGLPGLRGDAGAKGEKGHPGLI-GLIGPPGEQGEKGDRGLPGPQGSPGQ---- 1442
Query: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
+ GP PP L PGPA P A PG G G + + P H
Sbjct: 1443 KGEMGIPGASGPIGPGGPPGL----PGPAGPKGAKGATGPG----GPKGEKGVQGPPGHP 1494
Query: 181 GPPG 184
GPPG
Sbjct: 1495 GPPG 1498
Score = 28.5 bits (62), Expect = 7.9
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR-- 63
G R L G Q +P SG G G P+GA A PG P
Sbjct: 1429 GDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG--PKGAKGATGPGGPKGEKG 1486
Query: 64 VSAPPPAPPPP 74
V PP P PP
Sbjct: 1487 VQGPPGHPGPP 1497
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 64.3 bits (155), Expect = 1e-10
Identities = 90/321 (28%), Positives = 108/321 (33%), Gaps = 56/321 (17%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
G L GL P + G E GA G + P G G PG+
Sbjct: 237 GKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGP-----KGPPGVDGVGVPGA------ 285
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
A P P P G + P + P + PG G + G AG G L
Sbjct: 286 AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGD-RGPAGVPGLLGDRGEPGE 344
Query: 126 AAQRG--GPARAQVPPALRTFS--PGPASPP----RASPGGRPG----------SEARGR 167
+ G GP PP L + PG PP A PGG PG S G+
Sbjct: 345 DGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGK 404
Query: 168 SGAECARRVPLHHGPPGAS---------------GVGSERDRKFQL---HQTPARGPP-F 208
G R +P HGPPG + GV +K L Q RGP
Sbjct: 405 PGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGI 464
Query: 209 PGISGMTRGPVVLSGVNRQHRWP--PGASPSRSLGEAGGERPARALRRPRAPGRAGGGGP 266
PG+ G GP+ G+ P PG GE G P P +PG G GP
Sbjct: 465 PGLQG-PAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGP 523
Query: 267 PG----GGIPACSIGPGLARL 283
PG G P G+A L
Sbjct: 524 PGPPGPPGAPGAFDETGIAGL 544
Score = 55.5 bits (132), Expect = 6e-08
Identities = 87/303 (28%), Positives = 101/303 (33%), Gaps = 74/303 (24%)
Query: 54 AGAPGSPLYRVSAPPPAPPPPPPPGGPS-RSE---RPRAGLR------------------ 91
AG PG + PP P PPG P R E R GLR
Sbjct: 114 AGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPG 173
Query: 92 -PGAFVSPGPLGRRASCS--------GRAGSAGRLRCSAAALSAA--QRGGPARAQVPPA 140
PGA PGP G + G G G L A Q G P +P
Sbjct: 174 KPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGP 233
Query: 141 LRTFSPG----PASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPPGASGVGSERDRK 195
PG P +P G PG RG GA + GPPG GVG
Sbjct: 234 AGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPK------GPPGVDGVGVPGAAG 287
Query: 196 FQLHQTPA--------RGPP---------FPGISGM--TRGPVVLSGVNRQHRWP----- 231
Q P+ RGPP PG+ G RGP + G+ P
Sbjct: 288 LPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGE 347
Query: 232 PGASPSRSLGEAGGERPARALRRPRAP----GRAGGGGPPGGGIPACSIGPGLARLAALG 287
PG + LG G + L R P G AG GGPP G+P G + LA
Sbjct: 348 PGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPP--GVPGIRGDQGPSGLAGKP 405
Query: 288 GLP 290
G+P
Sbjct: 406 GVP 408
Score = 55.1 bits (131), Expect = 8e-08
Identities = 91/318 (28%), Positives = 110/318 (34%), Gaps = 47/318 (14%)
Query: 17 PAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPP 75
P A G +G G G + + G G PG+P + PP P P
Sbjct: 175 PGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPA 234
Query: 76 PPGGPSRSERPRA-------------GLR--PGAFVSPGPLG-RRASCSGRAGSAGRLRC 119
G P P A G R PGA GP G G AG G
Sbjct: 235 GLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGP 294
Query: 120 SAAALSAAQRGGPARAQVPPALRTFSPGPASP--PRASPG-----GRPGSEARGRSGAEC 172
S A RG P PGP P PG G PG + G G +
Sbjct: 295 SGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED--GEPGEQG 352
Query: 173 ARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLS---GVNRQH 228
+ + G PG++G+ R + GPP PGI G +GP L+ GV +
Sbjct: 353 PQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRG-DQGPSGLAGKPGVPGER 411
Query: 229 -----RWPPGASPSRS----LGEAGGERPARALRR------PRAPGRAGGGGPPGGGIPA 273
PPG + + G GG A AL + P PG G G PG PA
Sbjct: 412 GLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPA 471
Query: 274 CSIGP-GLARLAALGGLP 290
IGP GL L GLP
Sbjct: 472 GPIGPQGLPGLKGEPGLP 489
Score = 54.7 bits (130), Expect = 1e-07
Identities = 69/224 (30%), Positives = 79/224 (35%), Gaps = 57/224 (25%)
Query: 67 PPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSA 126
PP P P PPG P +P G +PG PGP G R G AG
Sbjct: 81 PPGKPGPRGPPGPPGFPGKPGMG-KPGLHGQPGPAGPPGF--SRMGKAG----------- 126
Query: 127 AQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEAR-GRSGAECARRVPLHHGPPGA 185
PP L PG PP G+PG G G + R P G PG
Sbjct: 127 -----------PPGL----PGKVGPP-----GQPGLRGEPGIRGDQGLRGPPGPPGLPGP 166
Query: 186 SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL-GEAG 244
SG+ P PG G+ GP G + PG R L G+ G
Sbjct: 167 SGITI---------------PGKPGAQGVP-GPPGFQG-EPGPQGEPGPPGDRGLKGDNG 209
Query: 245 GERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGG 288
+P P APG+ G GPPG PA PGL L G
Sbjct: 210 VGQPGL----PGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPG 249
Score = 47.4 bits (111), Expect = 2e-05
Identities = 63/216 (29%), Positives = 71/216 (32%), Gaps = 39/216 (18%)
Query: 55 GAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA-SCSGRAGS 113
G PG P R PP P P G +PG PGP G S G+AG
Sbjct: 80 GPPGKPGPRGPPGPPGFPGKPGMG------------KPGLHGQPGPAGPPGFSRMGKAGP 127
Query: 114 AGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECA 173
G RG P + LR GP PP G G G+ GA+
Sbjct: 128 PGLPGKVGPPGQPGLRGEPG-IRGDQGLR----GPPGPPGLP--GPSGITIPGKPGAQGV 180
Query: 174 RRVPLHHGPPGASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPP 232
P G PG G G DR + P PG G P PP
Sbjct: 181 PGPPGFQGEPGPQGEPGPPGDRGLK-GDNGVGQPGLPGAPGQGGAP-----------GPP 228
Query: 233 GASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
G LG+ G + P APG G GPPG
Sbjct: 229 GLPGPAGLGKPGLD------GLPGAPGDKGESGPPG 258
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/108 (33%), Positives = 41/108 (37%), Gaps = 28/108 (25%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP+ L GL+ P GRA E G AG P G G PGSP ++
Sbjct: 475 GPQGLPGLKGEPGLPGPPG----EGRAGEPGTAG--------PTGP--PGVPGSP--GIT 518
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGS 113
PP P PP PPG P GAF G G G G+
Sbjct: 519 GPPGPPGPPGPPGAP------------GAFDETGIAGLHLPNGGVEGA 554
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 63.9 bits (154), Expect = 2e-10
Identities = 91/316 (28%), Positives = 111/316 (35%), Gaps = 69/316 (21%)
Query: 15 RTPAAYANEAAL----AISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA 70
RTP A A +SG GAAGAG A + GAPG+ PPPA
Sbjct: 46 RTPEVRAAAAGALGNHVVSG--SPAGAAGAGP-------AAPAEGAPGA----APEPPPA 92
Query: 71 PPPPPPPGGPSR----SER----PRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAA 122
P GGP R S R P P A + P P G SC+ +A + A
Sbjct: 93 GRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAA-----AVA 147
Query: 123 ALSAAQRGGPARAQVPPALRT-FSPGPASPPRASPGGRPGSEARGRSGAE----CARRVP 177
A GPA+ P AL PGP P PG PG A G A+ A +
Sbjct: 148 AGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPA-GPGAAQTLNGSAALLN 206
Query: 178 LHH-GPPGASGVGSERDRKFQLHQTPARG-----PPFPGISGMTR--------------- 216
HH P S V + L + A G PPF G +
Sbjct: 207 SHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAP 266
Query: 217 ---------GPVVLSGVNRQHRWPPGASPS---RSLGEAGGERPARALRRPRAPGRAGGG 264
P L+ PP A+P+ + + GG A P A G AG
Sbjct: 267 AAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVS 326
Query: 265 GPPGGGIPACSIGPGL 280
G PG G A + PG+
Sbjct: 327 GQPGPGAAAAAPAPGV 342
Score = 45.1 bits (105), Expect = 8e-05
Identities = 39/128 (30%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 50 GAVSAGAPGSPLYRVSAPPPAPP--PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASC 107
GA + AP +P + P AP PPPPP P+ RP P + P +
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG--HPAGPPTAAPAVPPPAA 302
Query: 108 SGRAGSAGRLRCSAAALSAAQRGGPA--RAQVPPALRTFSPGPA----SPPRASPGGRPG 161
+ GSAG AA A GGPA Q P +P P SP R P
Sbjct: 303 AQNGGSAG-----AAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPA 357
Query: 162 SEARGRSG 169
++ SG
Sbjct: 358 AQTLAASG 365
Score = 39.7 bits (91), Expect = 0.003
Identities = 55/199 (27%), Positives = 69/199 (34%), Gaps = 39/199 (19%)
Query: 110 RAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSG 169
RA +AG L + S A G P A +PG A P + RPG R G
Sbjct: 51 RAAAAGALGNHVVSGSPAGAAGAG----PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPG 106
Query: 170 AECARR--VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
RR VP PP A PP G +G PV +
Sbjct: 107 PPSPRRPLVPAGPAPPAAK-----------------LRPPPEGSAGSC-APVPAAAAVAA 148
Query: 228 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALG 287
P A P++ G A A A R PG G GP GPG + A G
Sbjct: 149 GPEPAPAGPAKPAGPA-----ALAARAGPGPGPGPGPGP----------GPGPGKPAGPG 193
Query: 288 GLPSILESSRLLPSPRSSA 306
++ S+ LL S ++A
Sbjct: 194 AAQTLNGSAALLNSHHAAA 212
Score = 39.7 bits (91), Expect = 0.003
Identities = 50/191 (26%), Positives = 66/191 (34%), Gaps = 24/191 (12%)
Query: 3 ISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
++ GP L L + A G A A P +A P P
Sbjct: 218 VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAP 277
Query: 63 RVSAPPPAPP--PP------PPP--------GGPSRSERPRAGLRPGAFVSPGPLGRRAS 106
A PP P PP PPP G + + P AG G PGP A+
Sbjct: 278 ATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAA 337
Query: 107 CSGRAGSAGRLRCSAAALSAAQ---RGGPARAQ----VPPALRTFSPGPASPPRASPGGR 159
+ + R AA AAQ GPA + P ++ P PA+ P +P G
Sbjct: 338 PAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAP-GT 396
Query: 160 PGSEARGRSGA 170
P +G +GA
Sbjct: 397 PTGLPKGAAGA 407
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 63.2 bits (152), Expect = 3e-10
Identities = 85/281 (30%), Positives = 106/281 (37%), Gaps = 49/281 (17%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
GP+ G P A + A ++G+ G G PRG+ A P G P +
Sbjct: 862 GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-----PRGSRGARGPTGKPGPKG 916
Query: 65 SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
++ PP PP GP + P G PG PGP G+ G G G
Sbjct: 917 TSGGDGPPGPPGERGPQGPQGP-VGF-PGPKGPPGPPGK----DGLPGHPG--------- 961
Query: 125 SAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPP 183
QRG T G PP PGG G + G +G R P GPP
Sbjct: 962 ---QRG-----------ETGFQGKTGPP--GPGGVVGPQGPTGETGPIGERGHPGPPGPP 1005
Query: 184 GASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASPSRSL-G 241
G G+ ++ A+G P P GISG GP L G + R PGA + L G
Sbjct: 1006 GEQGLPGAAGKE------GAKGDPGPQGISGKD-GPAGLRGFPGE-RGLPGAQGAPGLKG 1057
Query: 242 EAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
G + P + P G AG GP G G P PG A
Sbjct: 1058 GEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPA 1098
Score = 63.2 bits (152), Expect = 3e-10
Identities = 82/294 (27%), Positives = 107/294 (36%), Gaps = 70/294 (23%)
Query: 30 GRADEEGAAGAGSKLWRRPRGAVSA-GAPGSPLYRVS------APPPAPPPPPPPGGPSR 82
G+ +EGA G + P G + G PG P + PP PP P P GP+
Sbjct: 1192 GQKGDEGARG-----FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1246
Query: 83 SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPARAQV 137
++ P+ PG+ S G +G + G AG+ G + +RG GP A
Sbjct: 1247 ADGPQGP--PGSVGSVGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAG 1303
Query: 138 PPALR--------TFSPGPAS-PPRASPGGRPGSEAR-------------------GRSG 169
PP + +PGP P P G PG + G SG
Sbjct: 1304 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1363
Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
P GPPGA+G + K + A GPP G T GPV G +
Sbjct: 1364 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP-----GKT-GPVGPQGPAGK-- 1415
Query: 230 WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG----GGIPACSIGPG 279
PG R + GE+ PG AG GPPG G+P PG
Sbjct: 1416 --PGPEGLRGIPGPVGEQ--------GLPGAAGQDGPPGPMGPPGLPGLKGDPG 1459
Score = 62.0 bits (149), Expect = 6e-10
Identities = 96/301 (31%), Positives = 114/301 (37%), Gaps = 47/301 (15%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP A T + A G+ E G + P A AG G
Sbjct: 414 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMG------- 466
Query: 66 APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
PP P PPG P P R GL PGA PGP G R G G + +A
Sbjct: 467 -PPGLQGPTGPPGDPGDRGPPGRPGL-PGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 524
Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSE-ARGRSGAECARRVPLHHGP 182
A + +A++ ALR PGP R P G PGS A+G SG + GP
Sbjct: 525 EAQAQAILQQARI--ALRG-PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGP 581
Query: 183 PGASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHR---------W 230
PG +G +R R RG P PG G RG L G+ ++ HR
Sbjct: 582 PGPTGKPGKRGRP---GADGGRGMPGEPGAKG-DRGFDGLPGLPGDKGHRGERGPQGPPG 637
Query: 231 PPGASPSRSL-GEAG-----GERPARALRRPRA-------PGRAGGGGPPGGGIPACSIG 277
PPG R GE G GE R L PR PG AG GPPG P ++G
Sbjct: 638 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG---PKGNMG 694
Query: 278 P 278
P
Sbjct: 695 P 695
Score = 61.2 bits (147), Expect = 1e-09
Identities = 79/275 (28%), Positives = 96/275 (34%), Gaps = 40/275 (14%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
G R L G Q P E G G G+ A G PG P
Sbjct: 1042 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGT-------AGPIGLPGRP----- 1089
Query: 66 APPPAPPPPPPPGGPSRSERP-----RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
P PP P G + P R G++ G PGP G S G G G +
Sbjct: 1090 -GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ-GPVGLPGPAGPAGS-PGEDGDKGEIGEP 1146
Query: 121 AAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPG-GRPGSEAR----GRSGAECA 173
S +G GP PP L+ GP P + G G PG + G+ G E A
Sbjct: 1147 GQKGSKGDKGENGPPG---PPGLQ----GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGA 1199
Query: 174 RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
R P GP G G+ K + GPP P +GP G + PPG
Sbjct: 1200 RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG----PQGPPG 1255
Query: 234 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
+ S+G G + P PG AG GGP G
Sbjct: 1256 S--VGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1288
Score = 60.5 bits (145), Expect = 2e-09
Identities = 81/298 (27%), Positives = 109/298 (36%), Gaps = 54/298 (18%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
GP G Q P + + + G E G G P G G P G +
Sbjct: 1243 GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG--------PPGEAGVGGPKGERGEKG 1294
Query: 65 SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRRASCSGRAGSAGRLRCSAAA 123
A PP PP GP + P+ P F PGP G +G+ G G
Sbjct: 1295 EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP-AGQDGVGG-------- 1345
Query: 124 LSAAQRGGPARAQVP-PALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGP 182
+ G P + P P+ PGP P + P G G+E GR G + A+ GP
Sbjct: 1346 -DKGEDGDPGQPGPPGPSGEAGPPGP--PGKRGPPGAAGAE--GRQGEKGAKGEAGAEGP 1400
Query: 183 PGASGVGSERDRKFQLHQTPARGPP-------FPGISGMT-----RGPVVLSGVNRQHRW 230
PG +G + + RG P PG +G GP L G+ +
Sbjct: 1401 PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGL----KG 1456
Query: 231 PPGASPSRS-------LGEAG--GERPARALRRPR-APGRAGGGGPPGGGIPACSIGP 278
PG+ + +G G GE+ R L + +PG G GG PG PA +GP
Sbjct: 1457 DPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPG---PAGPLGP 1511
Score = 52.4 bits (124), Expect = 5e-07
Identities = 72/256 (28%), Positives = 93/256 (36%), Gaps = 31/256 (12%)
Query: 71 PPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRCSAAALSAAQ 128
P P P G + E+ + G+ PG PG G + S G G+ G A
Sbjct: 833 PTGDPGPSGQA-GEKGKLGV-PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGP 890
Query: 129 RG--GPARAQVPPALR--TFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLH 179
RG GP + R T PGP P PG R +G G + P
Sbjct: 891 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP-- 948
Query: 180 HGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPS 237
GPPG G+ ++ + GPP PG +GP +G R H PPG
Sbjct: 949 -GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE 1007
Query: 238 RSLGEAGGERPARALRRPRAPGRAGGGGPPG-------GGIPACSIGPGLARLAALGGLP 290
+ L A G+ A+ P G +G GP G G+P PGL G P
Sbjct: 1008 QGLPGAAGKEGAKG--DPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP 1065
Query: 291 SILESSRLLPSPRSSA 306
+ S P R SA
Sbjct: 1066 GPVGS----PGERGSA 1077
Score = 50.8 bits (120), Expect = 1e-06
Identities = 68/234 (29%), Positives = 75/234 (32%), Gaps = 55/234 (23%)
Query: 55 GAPGSPLYRVSAPPPAPP----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
G PG P A PP PP PP G R A GA PG G G
Sbjct: 1354 GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGP-VGPQGP 1412
Query: 111 AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEAR--- 165
AG G ++G P A + PGP PP PG G PGS+
Sbjct: 1413 AGKPGPEGLRGIPGPVGEQGLPGAAG-----QDGPPGPMGPP-GLPGLKGDPGSKGEKGH 1466
Query: 166 ----------GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT 215
G G + R +P G PGA G G G P P
Sbjct: 1467 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG---------------GIPGPA----- 1506
Query: 216 RGPVVLSGVNRQHRWPPGA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
GP+ G PPG P G G PA PG G GPPG
Sbjct: 1507 -GPLGPPG-------PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPG 1552
Score = 50.1 bits (118), Expect = 3e-06
Identities = 76/304 (25%), Positives = 98/304 (32%), Gaps = 80/304 (26%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GPR L G + TP A + G +G G G PG P + +
Sbjct: 661 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP-------------QGEPGPPGQQGN 707
Query: 66 APPPAPPPPPPPGGPSRSERPR-----AGLRPGAFVSPGPLGRRASCS------------ 108
P P P P GP + P+ AGL PGA PG G+
Sbjct: 708 PGPQGLPGPQGPIGPPGEKGPQGKPGLAGL-PGADGPPGHPGKEGQSGEKGALGPPGPQG 766
Query: 109 --------GRAGSAGRLRCSAAALSAAQRGGPA----------RAQVPPALRTFSPGPAS 150
G G+ G + + G P R +V GP
Sbjct: 767 PIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEG 826
Query: 151 PP-RASPGGRPGSEA----RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG 205
P RA P G PG +G+ G P GP G++G
Sbjct: 827 PKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF----------------- 869
Query: 206 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA-LRRPRAPGRAGGG 264
P FPG +G +G ++G PG R G R AR +P G +GG
Sbjct: 870 PGFPGANG-EKGARGVAG-------KPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD 921
Query: 265 GPPG 268
GPPG
Sbjct: 922 GPPG 925
Score = 49.7 bits (117), Expect = 3e-06
Identities = 81/284 (28%), Positives = 102/284 (35%), Gaps = 37/284 (13%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
GP+ G+Q P G G G G+K R G G PG +R
Sbjct: 571 GPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL--PGLPGDKGHRG 628
Query: 65 SAPPPAPPPPPPPGGPSRSERPRAGLR--PGAFVSPGPLGRRASCSGRAGSAGRLRCSAA 122
P PP PP G R E G R PG G LG R G G+ G+ +
Sbjct: 629 ERGPQGPPGPPGDDG-MRGEDGEIGPRGLPGEAGPRGLLGPR----GTPGAPGQPGMAGV 683
Query: 123 ALSAAQRG--GPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLH 179
+G GP PP + +PGP P P G PG +G G +P
Sbjct: 684 DGPPGPKGNMGPQGEPGPPGQQG-NPGPQGLPGPQGPIGPPGE--KGPQGKPGLAGLPGA 740
Query: 180 HGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-----TRGPVVLSGVNRQ 227
GPPG G ++ Q + A GPP +PG G+ RG G +
Sbjct: 741 DGPPGHPG------KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE 794
Query: 228 HRWPPGASPSRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
+P G+ G G+ R P P GRAG G PG
Sbjct: 795 DGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG 838
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 63.2 bits (152), Expect = 3e-10
Identities = 85/281 (30%), Positives = 106/281 (37%), Gaps = 49/281 (17%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
GP+ G P A + A ++G+ G G PRG+ A P G P +
Sbjct: 811 GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-----PRGSRGARGPTGKPGPKG 865
Query: 65 SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
++ PP PP GP + P G PG PGP G+ G G G
Sbjct: 866 TSGGDGPPGPPGERGPQGPQGP-VGF-PGPKGPPGPPGK----DGLPGHPG--------- 910
Query: 125 SAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPP 183
QRG T G PP PGG G + G +G R P GPP
Sbjct: 911 ---QRG-----------ETGFQGKTGPP--GPGGVVGPQGPTGETGPIGERGHPGPPGPP 954
Query: 184 GASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASPSRSL-G 241
G G+ ++ A+G P P GISG GP L G + R PGA + L G
Sbjct: 955 GEQGLPGAAGKE------GAKGDPGPQGISGKD-GPAGLRGFPGE-RGLPGAQGAPGLKG 1006
Query: 242 EAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
G + P + P G AG GP G G P PG A
Sbjct: 1007 GEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPA 1047
Score = 63.2 bits (152), Expect = 3e-10
Identities = 82/294 (27%), Positives = 107/294 (36%), Gaps = 70/294 (23%)
Query: 30 GRADEEGAAGAGSKLWRRPRGAVSA-GAPGSPLYRVS------APPPAPPPPPPPGGPSR 82
G+ +EGA G + P G + G PG P + PP PP P P GP+
Sbjct: 1141 GQKGDEGARG-----FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1195
Query: 83 SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPARAQV 137
++ P+ PG+ S G +G + G AG+ G + +RG GP A
Sbjct: 1196 ADGPQGP--PGSVGSVGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAG 1252
Query: 138 PPALR--------TFSPGPAS-PPRASPGGRPGSEAR-------------------GRSG 169
PP + +PGP P P G PG + G SG
Sbjct: 1253 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1312
Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
P GPPGA+G + K + A GPP G T GPV G +
Sbjct: 1313 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP-----GKT-GPVGPQGPAGK-- 1364
Query: 230 WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG----GGIPACSIGPG 279
PG R + GE+ PG AG GPPG G+P PG
Sbjct: 1365 --PGPEGLRGIPGPVGEQ--------GLPGAAGQDGPPGPMGPPGLPGLKGDPG 1408
Score = 62.0 bits (149), Expect = 6e-10
Identities = 96/301 (31%), Positives = 114/301 (37%), Gaps = 47/301 (15%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP A T + A G+ E G + P A AG G
Sbjct: 363 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMG------- 415
Query: 66 APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
PP P PPG P P R GL PGA PGP G R G G + +A
Sbjct: 416 -PPGLQGPTGPPGDPGDRGPPGRPGL-PGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 473
Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSE-ARGRSGAECARRVPLHHGP 182
A + +A++ ALR PGP R P G PGS A+G SG + GP
Sbjct: 474 EAQAQAILQQARI--ALRG-PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGP 530
Query: 183 PGASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHR---------W 230
PG +G +R R RG P PG G RG L G+ ++ HR
Sbjct: 531 PGPTGKPGKRGRP---GADGGRGMPGEPGAKG-DRGFDGLPGLPGDKGHRGERGPQGPPG 586
Query: 231 PPGASPSRSL-GEAG-----GERPARALRRPRA-------PGRAGGGGPPGGGIPACSIG 277
PPG R GE G GE R L PR PG AG GPPG P ++G
Sbjct: 587 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG---PKGNMG 643
Query: 278 P 278
P
Sbjct: 644 P 644
Score = 61.2 bits (147), Expect = 1e-09
Identities = 79/275 (28%), Positives = 96/275 (34%), Gaps = 40/275 (14%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
G R L G Q P E G G G+ A G PG P
Sbjct: 991 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGT-------AGPIGLPGRP----- 1038
Query: 66 APPPAPPPPPPPGGPSRSERP-----RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
P PP P G + P R G++ G PGP G S G G G +
Sbjct: 1039 -GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ-GPVGLPGPAGPAGS-PGEDGDKGEIGEP 1095
Query: 121 AAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPG-GRPGSEAR----GRSGAECA 173
S +G GP PP L+ GP P + G G PG + G+ G E A
Sbjct: 1096 GQKGSKGDKGENGPPG---PPGLQ----GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGA 1148
Query: 174 RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
R P GP G G+ K + GPP P +GP G + PPG
Sbjct: 1149 RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG----PQGPPG 1204
Query: 234 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
+ S+G G + P PG AG GGP G
Sbjct: 1205 S--VGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1237
Score = 60.5 bits (145), Expect = 2e-09
Identities = 81/298 (27%), Positives = 109/298 (36%), Gaps = 54/298 (18%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
GP G Q P + + + G E G G P G G P G +
Sbjct: 1192 GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG--------PPGEAGVGGPKGERGEKG 1243
Query: 65 SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRRASCSGRAGSAGRLRCSAAA 123
A PP PP GP + P+ P F PGP G +G+ G G
Sbjct: 1244 EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP-AGQDGVGG-------- 1294
Query: 124 LSAAQRGGPARAQVP-PALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGP 182
+ G P + P P+ PGP P + P G G+E GR G + A+ GP
Sbjct: 1295 -DKGEDGDPGQPGPPGPSGEAGPPGP--PGKRGPPGAAGAE--GRQGEKGAKGEAGAEGP 1349
Query: 183 PGASGVGSERDRKFQLHQTPARGPP-------FPGISGMT-----RGPVVLSGVNRQHRW 230
PG +G + + RG P PG +G GP L G+ +
Sbjct: 1350 PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGL----KG 1405
Query: 231 PPGASPSRS-------LGEAG--GERPARALRRPR-APGRAGGGGPPGGGIPACSIGP 278
PG+ + +G G GE+ R L + +PG G GG PG PA +GP
Sbjct: 1406 DPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPG---PAGPLGP 1460
Score = 52.4 bits (124), Expect = 5e-07
Identities = 72/256 (28%), Positives = 93/256 (36%), Gaps = 31/256 (12%)
Query: 71 PPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRCSAAALSAAQ 128
P P P G + E+ + G+ PG PG G + S G G+ G A
Sbjct: 782 PTGDPGPSGQA-GEKGKLGV-PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGP 839
Query: 129 RG--GPARAQVPPALR--TFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLH 179
RG GP + R T PGP P PG R +G G + P
Sbjct: 840 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP-- 897
Query: 180 HGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPS 237
GPPG G+ ++ + GPP PG +GP +G R H PPG
Sbjct: 898 -GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE 956
Query: 238 RSLGEAGGERPARALRRPRAPGRAGGGGPPG-------GGIPACSIGPGLARLAALGGLP 290
+ L A G+ A+ P G +G GP G G+P PGL G P
Sbjct: 957 QGLPGAAGKEGAKG--DPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP 1014
Query: 291 SILESSRLLPSPRSSA 306
+ S P R SA
Sbjct: 1015 GPVGS----PGERGSA 1026
Score = 50.8 bits (120), Expect = 1e-06
Identities = 68/234 (29%), Positives = 75/234 (32%), Gaps = 55/234 (23%)
Query: 55 GAPGSPLYRVSAPPPAPP----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
G PG P A PP PP PP G R A GA PG G G
Sbjct: 1303 GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGP-VGPQGP 1361
Query: 111 AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEAR--- 165
AG G ++G P A + PGP PP PG G PGS+
Sbjct: 1362 AGKPGPEGLRGIPGPVGEQGLPGAAG-----QDGPPGPMGPP-GLPGLKGDPGSKGEKGH 1415
Query: 166 ----------GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT 215
G G + R +P G PGA G G G P P
Sbjct: 1416 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG---------------GIPGPA----- 1455
Query: 216 RGPVVLSGVNRQHRWPPGA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
GP+ G PPG P G G PA PG G GPPG
Sbjct: 1456 -GPLGPPG-------PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPG 1501
Score = 50.1 bits (118), Expect = 3e-06
Identities = 76/304 (25%), Positives = 98/304 (32%), Gaps = 80/304 (26%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GPR L G + TP A + G +G G G PG P + +
Sbjct: 610 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP-------------QGEPGPPGQQGN 656
Query: 66 APPPAPPPPPPPGGPSRSERPR-----AGLRPGAFVSPGPLGRRASCS------------ 108
P P P P GP + P+ AGL PGA PG G+
Sbjct: 657 PGPQGLPGPQGPIGPPGEKGPQGKPGLAGL-PGADGPPGHPGKEGQSGEKGALGPPGPQG 715
Query: 109 --------GRAGSAGRLRCSAAALSAAQRGGPA----------RAQVPPALRTFSPGPAS 150
G G+ G + + G P R +V GP
Sbjct: 716 PIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEG 775
Query: 151 PP-RASPGGRPGSEA----RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG 205
P RA P G PG +G+ G P GP G++G
Sbjct: 776 PKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF----------------- 818
Query: 206 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA-LRRPRAPGRAGGG 264
P FPG +G +G ++G PG R G R AR +P G +GG
Sbjct: 819 PGFPGANG-EKGARGVAG-------KPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD 870
Query: 265 GPPG 268
GPPG
Sbjct: 871 GPPG 874
Score = 49.7 bits (117), Expect = 3e-06
Identities = 81/284 (28%), Positives = 102/284 (35%), Gaps = 37/284 (13%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
GP+ G+Q P G G G G+K R G G PG +R
Sbjct: 520 GPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL--PGLPGDKGHRG 577
Query: 65 SAPPPAPPPPPPPGGPSRSERPRAGLR--PGAFVSPGPLGRRASCSGRAGSAGRLRCSAA 122
P PP PP G R E G R PG G LG R G G+ G+ +
Sbjct: 578 ERGPQGPPGPPGDDG-MRGEDGEIGPRGLPGEAGPRGLLGPR----GTPGAPGQPGMAGV 632
Query: 123 ALSAAQRG--GPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLH 179
+G GP PP + +PGP P P G PG +G G +P
Sbjct: 633 DGPPGPKGNMGPQGEPGPPGQQG-NPGPQGLPGPQGPIGPPGE--KGPQGKPGLAGLPGA 689
Query: 180 HGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-----TRGPVVLSGVNRQ 227
GPPG G ++ Q + A GPP +PG G+ RG G +
Sbjct: 690 DGPPGHPG------KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE 743
Query: 228 HRWPPGASPSRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
+P G+ G G+ R P P GRAG G PG
Sbjct: 744 DGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG 787
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 63.2 bits (152), Expect = 3e-10
Identities = 85/281 (30%), Positives = 106/281 (37%), Gaps = 49/281 (17%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
GP+ G P A + A ++G+ G G PRG+ A P G P +
Sbjct: 850 GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-----PRGSRGARGPTGKPGPKG 904
Query: 65 SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
++ PP PP GP + P G PG PGP G+ G G G
Sbjct: 905 TSGGDGPPGPPGERGPQGPQGP-VGF-PGPKGPPGPPGK----DGLPGHPG--------- 949
Query: 125 SAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPP 183
QRG T G PP PGG G + G +G R P GPP
Sbjct: 950 ---QRG-----------ETGFQGKTGPP--GPGGVVGPQGPTGETGPIGERGHPGPPGPP 993
Query: 184 GASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASPSRSL-G 241
G G+ ++ A+G P P GISG GP L G + R PGA + L G
Sbjct: 994 GEQGLPGAAGKE------GAKGDPGPQGISGKD-GPAGLRGFPGE-RGLPGAQGAPGLKG 1045
Query: 242 EAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
G + P + P G AG GP G G P PG A
Sbjct: 1046 GEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPA 1086
Score = 63.2 bits (152), Expect = 3e-10
Identities = 82/294 (27%), Positives = 107/294 (36%), Gaps = 70/294 (23%)
Query: 30 GRADEEGAAGAGSKLWRRPRGAVSA-GAPGSPLYRVS------APPPAPPPPPPPGGPSR 82
G+ +EGA G + P G + G PG P + PP PP P P GP+
Sbjct: 1180 GQKGDEGARG-----FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1234
Query: 83 SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPARAQV 137
++ P+ PG+ S G +G + G AG+ G + +RG GP A
Sbjct: 1235 ADGPQGP--PGSVGSVGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAG 1291
Query: 138 PPALR--------TFSPGPAS-PPRASPGGRPGSEAR-------------------GRSG 169
PP + +PGP P P G PG + G SG
Sbjct: 1292 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1351
Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
P GPPGA+G + K + A GPP G T GPV G +
Sbjct: 1352 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP-----GKT-GPVGPQGPAGK-- 1403
Query: 230 WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG----GGIPACSIGPG 279
PG R + GE+ PG AG GPPG G+P PG
Sbjct: 1404 --PGPEGLRGIPGPVGEQ--------GLPGAAGQDGPPGPMGPPGLPGLKGDPG 1447
Score = 62.0 bits (149), Expect = 6e-10
Identities = 96/301 (31%), Positives = 114/301 (37%), Gaps = 47/301 (15%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP A T + A G+ E G + P A AG G
Sbjct: 402 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMG------- 454
Query: 66 APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
PP P PPG P P R GL PGA PGP G R G G + +A
Sbjct: 455 -PPGLQGPTGPPGDPGDRGPPGRPGL-PGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 512
Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSE-ARGRSGAECARRVPLHHGP 182
A + +A++ ALR PGP R P G PGS A+G SG + GP
Sbjct: 513 EAQAQAILQQARI--ALRG-PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGP 569
Query: 183 PGASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHR---------W 230
PG +G +R R RG P PG G RG L G+ ++ HR
Sbjct: 570 PGPTGKPGKRGRP---GADGGRGMPGEPGAKG-DRGFDGLPGLPGDKGHRGERGPQGPPG 625
Query: 231 PPGASPSRSL-GEAG-----GERPARALRRPRA-------PGRAGGGGPPGGGIPACSIG 277
PPG R GE G GE R L PR PG AG GPPG P ++G
Sbjct: 626 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG---PKGNMG 682
Query: 278 P 278
P
Sbjct: 683 P 683
Score = 61.2 bits (147), Expect = 1e-09
Identities = 79/275 (28%), Positives = 96/275 (34%), Gaps = 40/275 (14%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
G R L G Q P E G G G+ A G PG P
Sbjct: 1030 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGT-------AGPIGLPGRP----- 1077
Query: 66 APPPAPPPPPPPGGPSRSERP-----RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
P PP P G + P R G++ G PGP G S G G G +
Sbjct: 1078 -GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ-GPVGLPGPAGPAGS-PGEDGDKGEIGEP 1134
Query: 121 AAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPG-GRPGSEAR----GRSGAECA 173
S +G GP PP L+ GP P + G G PG + G+ G E A
Sbjct: 1135 GQKGSKGDKGENGPPG---PPGLQ----GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGA 1187
Query: 174 RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
R P GP G G+ K + GPP P +GP G + PPG
Sbjct: 1188 RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG----PQGPPG 1243
Query: 234 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
+ S+G G + P PG AG GGP G
Sbjct: 1244 S--VGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1276
Score = 60.5 bits (145), Expect = 2e-09
Identities = 81/298 (27%), Positives = 109/298 (36%), Gaps = 54/298 (18%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
GP G Q P + + + G E G G P G G P G +
Sbjct: 1231 GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG--------PPGEAGVGGPKGERGEKG 1282
Query: 65 SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRRASCSGRAGSAGRLRCSAAA 123
A PP PP GP + P+ P F PGP G +G+ G G
Sbjct: 1283 EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP-AGQDGVGG-------- 1333
Query: 124 LSAAQRGGPARAQVP-PALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGP 182
+ G P + P P+ PGP P + P G G+E GR G + A+ GP
Sbjct: 1334 -DKGEDGDPGQPGPPGPSGEAGPPGP--PGKRGPPGAAGAE--GRQGEKGAKGEAGAEGP 1388
Query: 183 PGASGVGSERDRKFQLHQTPARGPP-------FPGISGMT-----RGPVVLSGVNRQHRW 230
PG +G + + RG P PG +G GP L G+ +
Sbjct: 1389 PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGL----KG 1444
Query: 231 PPGASPSRS-------LGEAG--GERPARALRRPR-APGRAGGGGPPGGGIPACSIGP 278
PG+ + +G G GE+ R L + +PG G GG PG PA +GP
Sbjct: 1445 DPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPG---PAGPLGP 1499
Score = 52.4 bits (124), Expect = 5e-07
Identities = 72/256 (28%), Positives = 93/256 (36%), Gaps = 31/256 (12%)
Query: 71 PPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRCSAAALSAAQ 128
P P P G + E+ + G+ PG PG G + S G G+ G A
Sbjct: 821 PTGDPGPSGQA-GEKGKLGV-PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGP 878
Query: 129 RG--GPARAQVPPALR--TFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLH 179
RG GP + R T PGP P PG R +G G + P
Sbjct: 879 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP-- 936
Query: 180 HGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPS 237
GPPG G+ ++ + GPP PG +GP +G R H PPG
Sbjct: 937 -GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE 995
Query: 238 RSLGEAGGERPARALRRPRAPGRAGGGGPPG-------GGIPACSIGPGLARLAALGGLP 290
+ L A G+ A+ P G +G GP G G+P PGL G P
Sbjct: 996 QGLPGAAGKEGAKG--DPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP 1053
Query: 291 SILESSRLLPSPRSSA 306
+ S P R SA
Sbjct: 1054 GPVGS----PGERGSA 1065
Score = 50.8 bits (120), Expect = 1e-06
Identities = 68/234 (29%), Positives = 75/234 (32%), Gaps = 55/234 (23%)
Query: 55 GAPGSPLYRVSAPPPAPP----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
G PG P A PP PP PP G R A GA PG G G
Sbjct: 1342 GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGP-VGPQGP 1400
Query: 111 AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEAR--- 165
AG G ++G P A + PGP PP PG G PGS+
Sbjct: 1401 AGKPGPEGLRGIPGPVGEQGLPGAAG-----QDGPPGPMGPP-GLPGLKGDPGSKGEKGH 1454
Query: 166 ----------GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT 215
G G + R +P G PGA G G G P P
Sbjct: 1455 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG---------------GIPGPA----- 1494
Query: 216 RGPVVLSGVNRQHRWPPGA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
GP+ G PPG P G G PA PG G GPPG
Sbjct: 1495 -GPLGPPG-------PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPG 1540
Score = 50.1 bits (118), Expect = 3e-06
Identities = 76/304 (25%), Positives = 98/304 (32%), Gaps = 80/304 (26%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GPR L G + TP A + G +G G G PG P + +
Sbjct: 649 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP-------------QGEPGPPGQQGN 695
Query: 66 APPPAPPPPPPPGGPSRSERPR-----AGLRPGAFVSPGPLGRRASCS------------ 108
P P P P GP + P+ AGL PGA PG G+
Sbjct: 696 PGPQGLPGPQGPIGPPGEKGPQGKPGLAGL-PGADGPPGHPGKEGQSGEKGALGPPGPQG 754
Query: 109 --------GRAGSAGRLRCSAAALSAAQRGGPA----------RAQVPPALRTFSPGPAS 150
G G+ G + + G P R +V GP
Sbjct: 755 PIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEG 814
Query: 151 PP-RASPGGRPGSEA----RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG 205
P RA P G PG +G+ G P GP G++G
Sbjct: 815 PKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF----------------- 857
Query: 206 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA-LRRPRAPGRAGGG 264
P FPG +G +G ++G PG R G R AR +P G +GG
Sbjct: 858 PGFPGANG-EKGARGVAG-------KPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD 909
Query: 265 GPPG 268
GPPG
Sbjct: 910 GPPG 913
Score = 49.7 bits (117), Expect = 3e-06
Identities = 81/284 (28%), Positives = 102/284 (35%), Gaps = 37/284 (13%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
GP+ G+Q P G G G G+K R G G PG +R
Sbjct: 559 GPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL--PGLPGDKGHRG 616
Query: 65 SAPPPAPPPPPPPGGPSRSERPRAGLR--PGAFVSPGPLGRRASCSGRAGSAGRLRCSAA 122
P PP PP G R E G R PG G LG R G G+ G+ +
Sbjct: 617 ERGPQGPPGPPGDDG-MRGEDGEIGPRGLPGEAGPRGLLGPR----GTPGAPGQPGMAGV 671
Query: 123 ALSAAQRG--GPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLH 179
+G GP PP + +PGP P P G PG +G G +P
Sbjct: 672 DGPPGPKGNMGPQGEPGPPGQQG-NPGPQGLPGPQGPIGPPGE--KGPQGKPGLAGLPGA 728
Query: 180 HGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-----TRGPVVLSGVNRQ 227
GPPG G ++ Q + A GPP +PG G+ RG G +
Sbjct: 729 DGPPGHPG------KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE 782
Query: 228 HRWPPGASPSRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
+P G+ G G+ R P P GRAG G PG
Sbjct: 783 DGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG 826
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 63.2 bits (152), Expect = 3e-10
Identities = 92/308 (29%), Positives = 111/308 (36%), Gaps = 68/308 (22%)
Query: 46 RRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGP--------SRSERPRAGLRPGAFVS 97
R PRG G PG P P PP PP P GP ++ + GL PG
Sbjct: 38 RGPRG--ERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGL 95
Query: 98 PGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPP-RA 154
GP G G AG+ G A + G GPA A+ GPA PP +A
Sbjct: 96 MGPRGP----PGAAGAPGPQGFQGPAGEPGEPGQTGPAGAR----------GPAGPPGKA 141
Query: 155 SPGGRPGSEA----RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG----P 206
G PG RG G + AR P G PG G+ Q A G P
Sbjct: 142 GEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEP 201
Query: 207 PFPGISGMTRGPVVLSGV--NRQHRWPPGASPSR----SLGEAGGERPARALRRPRAP-- 258
PG +G T G G+ R PG + +R S+G G P + P P
Sbjct: 202 GAPGENG-TPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGA 260
Query: 259 ----------GRAGGGGPPGG----GIPACS--IGP-------GLARLAALGGLPSILES 295
G AG GP G G+P S +GP GL GLP + +
Sbjct: 261 PGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGA 320
Query: 296 SRLLPSPR 303
LP PR
Sbjct: 321 PG-LPGPR 327
Score = 57.4 bits (137), Expect = 2e-08
Identities = 80/278 (28%), Positives = 102/278 (36%), Gaps = 35/278 (12%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP AG P + L G G+ G P A + G PG PL ++
Sbjct: 847 GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGL----PGVAGAVGEPG-PL-GIA 900
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
PP A PP G P + P R G + GP GR G+ G G
Sbjct: 901 GPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGR----DGQPGHKG---------- 946
Query: 126 AAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGA 185
+RG P + P +PGP P P G+ G+ RG +G GP G
Sbjct: 947 --ERGYP--GNIGPVGAAGAPGPHGP--VGPAGKHGN--RGETGPSGPVGPAGAVGPRGP 998
Query: 186 SGVGSERDRKFQLHQTPARGPPFPGISGMT--RGPVVLSGVNRQHRWPPGASPSRSLGEA 243
SG R K + + RG PG+ G +G ++G + P P+ G A
Sbjct: 999 SGPQGIRGDKGEPGEKGPRG--LPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPA 1056
Query: 244 GGERPARALRR---PRAPGRAGGGGPPGGGIPACSIGP 278
G PA R P G AG GP G PA GP
Sbjct: 1057 GPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGP 1094
Score = 56.2 bits (134), Expect = 4e-08
Identities = 84/297 (28%), Positives = 106/297 (35%), Gaps = 72/297 (24%)
Query: 30 GRADEEGAAGAGSKLWRR----PRGAVS-AGAPGSPLYR----------VSAPPPAPPPP 74
G+A E+G G + R P+GA G PG P ++ + P AP
Sbjct: 139 GKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVK 198
Query: 75 PPPGGPSRSERP-RAGLRP-----GAFVSPGPLGRRASC--------SGRAGSAGRLRCS 120
PG P + P + G R G +PGP G R S +G GSAG
Sbjct: 199 GEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFP 258
Query: 121 AA--------ALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAEC 172
A A+ A GPA + L S GP PP +PG + A+G +G
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLS-GPVGPP-GNPGANGLTGAKGAAGLPG 316
Query: 173 ARRVPLHHGP---------------------PGASGVGSERDRKFQLHQTPARGPPFPGI 211
P GP PG +G E K + +GPP P
Sbjct: 317 VAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSG 376
Query: 212 SGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
RGP +G PPG R G +R L P A GRAG GPPG
Sbjct: 377 EEGKRGPNGEAG----SAGPPGPPGLR------GSPGSRGL--PGADGRAGVMGPPG 421
Score = 56.2 bits (134), Expect = 4e-08
Identities = 102/363 (28%), Positives = 121/363 (33%), Gaps = 81/363 (22%)
Query: 6 GPRRLAGLQRT--PAAYANEAAL-AISGRADEEGAAGA----GSKLWRRPRG-------- 50
GPR L G PA L I GR G AGA G+ + P+G
Sbjct: 448 GPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKN 507
Query: 51 --------AVSAGAPGSPLYRVSAPPPAPP----------PPPPPG-----GPS--RSER 85
A + GAPG + PP P PP PPG GPS E
Sbjct: 508 GDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEV 567
Query: 86 PRAGLRP--GAFVSPGPLGRRASC-----SGRAGSAGRLRCSAAALSAAQRGGPARAQVP 138
+ G R G F PGP G R SG AG G + + G V
Sbjct: 568 GKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVV 627
Query: 139 PALRTFSP-GPASPP-----RASPGGR-----PGSEAR-GRSGAECARRVPLHHGPPGAS 186
A+ T P GP+ P PGG+ PG G G + AR P G PG +
Sbjct: 628 GAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPA 687
Query: 187 GVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN-----RQHRWPPGASPSRSL- 240
G +R + GP P S RG V +G N PGA R
Sbjct: 688 GATGDRG---EAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAK 744
Query: 241 ------------GEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALG 287
G G PA P G G GGPPG G P + G + +
Sbjct: 745 GPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGIS 804
Query: 288 GLP 290
G P
Sbjct: 805 GPP 807
Score = 55.1 bits (131), Expect = 8e-08
Identities = 96/298 (32%), Positives = 113/298 (37%), Gaps = 59/298 (19%)
Query: 29 SGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA----PPPPPPPGGPSRS 83
+G A G G AGS+ P G G PG+ R P P+ PP PP P G
Sbjct: 762 AGPAGPNGPPGPAGSRGDGGPPGMT--GFPGAA-GRTGPPGPSGISGPPGPPGPAGKEGL 818
Query: 84 ERPRAGLRP-------GAFVSPGPLGRRASCSGRAGSAG--------RLRCSAAAL---- 124
PR P GA PG G + SG AG+AG L + L
Sbjct: 819 RGPRGDQGPVGRTGEVGAVGPPGFAGEKGP-SGEAGTAGPPGTPGPQGLLGAPGILGLPG 877
Query: 125 SAAQRGGP----ARAQVPPALRTFSPGPASPPRA--SPG--GRPGSEARGRSGAECARRV 176
S +RG P A + P PG PP A SPG G PG GR G
Sbjct: 878 SRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGE--AGRDGN------ 929
Query: 177 PLHHGPPGASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS 235
P + GPPG G G + +R + + P PG GPV +G +H
Sbjct: 930 PGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPG----PHGPVGPAG---KHGNRGETG 982
Query: 236 PSRSLGEAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGPGLARLAALGGLPSI 292
PS +G AG P R P P G G G PG P PGL L GLP I
Sbjct: 983 PSGPVGPAGAVGP----RGPSGPQGIRGDKGEPGEKGPRGL--PGLKGHNGLQGLPGI 1034
Score = 49.7 bits (117), Expect = 3e-06
Identities = 87/313 (27%), Positives = 105/313 (33%), Gaps = 65/313 (20%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP AG P A + + G A G AG PRG V G PG
Sbjct: 247 GPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAG--------PRGEV--GLPG------- 289
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLR--------PGAFVSPGPLGRRASCSGRAGSAGRL 117
P PP P + AGL PG PGP+G A +G G G
Sbjct: 290 LSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGA-AGATGARGLVGEP 348
Query: 118 RCSAAALSAAQRGGPARA--QVPPALR--------TFSPGPASPPRASPGGRPGSEARGR 167
+ + + +G P A Q PP G A PP PG R +RG
Sbjct: 349 GPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPP-GPPGLRGSPGSRGL 407
Query: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG-------PPFPGISGMT--RGP 218
GA+ V G GASG R + G P PG G GP
Sbjct: 408 PGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGP 467
Query: 219 VVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIG 277
V L G++ + P P+ + GE PG G GP G G P +
Sbjct: 468 VGLPGIDGR---PGPIGPAGARGE---------------PGNIGFPGPKGPTGDPGKNGD 509
Query: 278 PGLARLAALGGLP 290
G A LA G P
Sbjct: 510 KGHAGLAGARGAP 522
Score = 32.3 bits (72), Expect = 0.54
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 20/107 (18%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPR----GAVS-AGAPGSP 60
G L GL + ++ A G A G AG + R G V AG G
Sbjct: 1024 GHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQ 1083
Query: 61 LYRVSAPPPAPPPPPPPGGPS-------------RSERPRA--GLRP 92
++ A PP PP PP P G S R+++PR+ LRP
Sbjct: 1084 GHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRP 1130
Score = 32.0 bits (71), Expect = 0.71
Identities = 42/141 (29%), Positives = 48/141 (34%), Gaps = 16/141 (11%)
Query: 29 SGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS-RSERPR 87
+G+ G G + P GAV P P + P P G P +
Sbjct: 972 AGKHGNRGETGPSGPVG--PAGAVGPRGPSGP-QGIRGDKGEPGEKGPRGLPGLKGHNGL 1028
Query: 88 AGLR--------PGAFVSPGPLGRR--ASCSGRAGSAGRLRCSAAALSAAQRGGPARAQV 137
GL GA S GP G R A SG AG GR A RG +
Sbjct: 1029 QGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRG--PQGHQ 1086
Query: 138 PPALRTFSPGPASPPRASPGG 158
PA PGP PP S GG
Sbjct: 1087 GPAGPPGPPGPPGPPGVSGGG 1107
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 63.2 bits (152), Expect = 3e-10
Identities = 89/305 (29%), Positives = 101/305 (33%), Gaps = 57/305 (18%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAP 71
G RTP E L G+ E G G + AG PGSP P P
Sbjct: 739 GSVRTPGGRVKEGGL--KGQKGEPGVPGPPGR----------AGPPGSPCL------PGP 780
Query: 72 PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGG 131
P P P P P PG PGP GR + GR G G +G
Sbjct: 781 PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGT-PGRDGEPGDPGEDGKPGDTGPQGF 839
Query: 132 PAR-AQVPPALRTFSPGPASPPRASPGGRPGS---------------EARGRSGAECARR 175
P V P PG P G PG E G G A R
Sbjct: 840 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALR 899
Query: 176 VPLHH----GPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLSGVNRQ--- 227
P GPPG G+ E R F ++ + GP PG+ G GP G+
Sbjct: 900 GPRGFPGPPGPPGVPGLPGEPGR-FGVNSSDVPGPAGLPGVPGR-EGPPGFPGLPGPPGP 957
Query: 228 --HRWPPGASPSR-SLGEAGGER---------PARALRRPRAPGRAGGGGPPGGGIPACS 275
PPG + + SLGEAG PA A G G GPPG P
Sbjct: 958 PGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGP 1017
Query: 276 IGPGL 280
GPGL
Sbjct: 1018 PGPGL 1022
Score = 57.0 bits (136), Expect = 2e-08
Identities = 81/277 (29%), Positives = 97/277 (35%), Gaps = 25/277 (9%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVS-AGAPGSP 60
GP GL P E +G+ G AGA GSK P GA +G G+P
Sbjct: 944 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 1003
Query: 61 LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRP---GAFVSPGPLGRRASCSGRAGSAGRL 117
PP PP PP PG P+ + P A + GP G G G G
Sbjct: 1004 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQG-PPGLPGLKGDPGVP 1062
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEARGRSGAECARR 175
A G P +P P R S G G PG + G+ G
Sbjct: 1063 GLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPG------ 1116
Query: 176 VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS 235
+P GPPG SE+D P P F G G GP G ++ R PG
Sbjct: 1117 LPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPG-PAGPKGNLG-SKGERGSPG-- 1172
Query: 236 PSRSLGEAGG----ERPARALRRPRAPGRAGGGGPPG 268
P GE G + A + A G G GPPG
Sbjct: 1173 PKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPG 1209
Score = 54.7 bits (130), Expect = 1e-07
Identities = 81/311 (26%), Positives = 102/311 (32%), Gaps = 69/311 (22%)
Query: 6 GPRRLAGLQRTPAAYAN---EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
G + G + P Y + + GR G G + ++ G G P
Sbjct: 1197 GAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMP-- 1254
Query: 63 RVSAPPPAPPPPPPPGGP-------SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG 115
PP P PP PPG P + S RP PG PGP G + G G G
Sbjct: 1255 ---GPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEV-GPPGPPG 1310
Query: 116 RLRCSAAALSAAQRG--------GPARAQVPPALRTF----SPGPASPPRASPGGRPGSE 163
+ L A +G G + P F PGP PP P G PG
Sbjct: 1311 QFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPP--GPRGYPG-- 1366
Query: 164 ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
G G E R P GP G G+G ++ Q P GPP P GP G
Sbjct: 1367 IPGPKG-ESIRGQPGPPGPQGPPGIG------YEGRQGPP-GPPGP------PGPPSFPG 1412
Query: 224 VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
+RQ + P PG G GPPG + + R
Sbjct: 1413 PHRQ-----------------------TISVPGPPGPPGPPGPPGTMGASSGVRLWATRQ 1449
Query: 284 AALGGLPSILE 294
A LG + + E
Sbjct: 1450 AMLGQVHEVPE 1460
Score = 46.6 bits (109), Expect = 3e-05
Identities = 81/281 (28%), Positives = 96/281 (34%), Gaps = 49/281 (17%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA 70
G+ P A A + G G G AG + + RG S G G P P
Sbjct: 1060 GVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG--SRGEKGDPGKDGVGQPGL 1117
Query: 71 PPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRR--ASCSGRAGSAGRLRCSAAALSAA 127
P PP PPG + G+ +S PGP GR A G AG G L S
Sbjct: 1118 PGPPGPPGPVVYVSE-----QDGSVLSVPGPEGRPGFAGFPGPAGPKGNLG------SKG 1166
Query: 128 QRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASG 187
+RG P P PG P GG G +G G R P +G PG G
Sbjct: 1167 ERGSPG-----PKGEKGEPGSIFSP---DGGALGPAQKGAKGEPGFRGPPGPYGRPGYKG 1218
Query: 188 -VGSERDRKFQLHQTPARGPPFPGISGM-----TRGPVVLSGVNRQHRWPPGASPSRSLG 241
+G P R P PG++G+ G L R PPG P G
Sbjct: 1219 EIG-----------FPGR-PGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG--PPGPPG 1264
Query: 242 EAG----GERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
G RP PG G GPPG +GP
Sbjct: 1265 PPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGP 1305
Score = 40.8 bits (94), Expect = 0.002
Identities = 81/285 (28%), Positives = 98/285 (34%), Gaps = 59/285 (20%)
Query: 33 DEEGAAG-AGSKLW-RRPRGAVSAGAPGSPLYRVSAPPPAPPPP---------------- 74
D +GA+G +GS L R GA P R+ APPP PP
Sbjct: 658 DSDGASGDSGSGLGDARELLREETGAALKP--RLPAPPPVTTPPLAGGSSTEDSRSEEVE 715
Query: 75 -----------PPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
PG S S + PG V G L + G G GR +
Sbjct: 716 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSP 775
Query: 124 LSAAQRGGPARAQ----VPPALRTFSPGPASPPRASPGGRPGSEAR-GRSGAECARRVPL 178
G P PAL+T PGP PP P GR G+ R G G P
Sbjct: 776 CLPGPPGLPCPVSPLGPAGPALQTV-PGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPG 832
Query: 179 HHGPPGASG----VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA 234
GP G G VG + D+ RGPP P +GP G + +H
Sbjct: 833 DTGPQGFPGTPGDVGPKGDKGDP--GVGERGPPGP------QGPPGPPGPSFRH----DK 880
Query: 235 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 279
+ +G ALR PR G G GPP G+P PG
Sbjct: 881 LTFIDMEGSGFGGDLEALRGPR--GFPGPPGPP--GVPGLPGEPG 921
Score = 29.6 bits (65), Expect = 3.5
Identities = 36/135 (26%), Positives = 47/135 (34%), Gaps = 24/135 (17%)
Query: 41 GSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGP 100
G+ LW S G P SP + P P P P R P G P P P
Sbjct: 165 GTTLWP------SRGIPSSPGAHTTEAGTLPAPTPSPPSLGRPWAPLTG--PSV---PPP 213
Query: 101 LGRRASCSGRAGSA---GRLRCSAAALSAAQRGGPARAQVPPALRTFSP----------G 147
RAS S G A G L+ + + P++ P +R +P G
Sbjct: 214 SSGRASLSSLLGGAPPWGSLQDPDSQGLSPAAAAPSQQLQRPDVRLRTPLLHPLVMGSLG 273
Query: 148 PASPPRASPGGRPGS 162
+ P A G PG+
Sbjct: 274 KHAAPSAFSSGLPGA 288
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 63.2 bits (152), Expect = 3e-10
Identities = 89/305 (29%), Positives = 101/305 (33%), Gaps = 57/305 (18%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAP 71
G RTP E L G+ E G G + AG PGSP P P
Sbjct: 324 GSVRTPGGRVKEGGL--KGQKGEPGVPGPPGR----------AGPPGSPCL------PGP 365
Query: 72 PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGG 131
P P P P P PG PGP GR + GR G G +G
Sbjct: 366 PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGT-PGRDGEPGDPGEDGKPGDTGPQGF 424
Query: 132 PAR-AQVPPALRTFSPGPASPPRASPGGRPGS---------------EARGRSGAECARR 175
P V P PG P G PG E G G A R
Sbjct: 425 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALR 484
Query: 176 VPLHH----GPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLSGVNRQ--- 227
P GPPG G+ E R F ++ + GP PG+ G GP G+
Sbjct: 485 GPRGFPGPPGPPGVPGLPGEPGR-FGVNSSDVPGPAGLPGVPGR-EGPPGFPGLPGPPGP 542
Query: 228 --HRWPPGASPSR-SLGEAGGER---------PARALRRPRAPGRAGGGGPPGGGIPACS 275
PPG + + SLGEAG PA A G G GPPG P
Sbjct: 543 PGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGP 602
Query: 276 IGPGL 280
GPGL
Sbjct: 603 PGPGL 607
Score = 57.0 bits (136), Expect = 2e-08
Identities = 81/277 (29%), Positives = 97/277 (35%), Gaps = 25/277 (9%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVS-AGAPGSP 60
GP GL P E +G+ G AGA GSK P GA +G G+P
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 588
Query: 61 LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRP---GAFVSPGPLGRRASCSGRAGSAGRL 117
PP PP PP PG P+ + P A + GP G G G G
Sbjct: 589 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQG-PPGLPGLKGDPGVP 647
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEARGRSGAECARR 175
A G P +P P R S G G PG + G+ G
Sbjct: 648 GLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPG------ 701
Query: 176 VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS 235
+P GPPG SE+D P P F G G GP G ++ R PG
Sbjct: 702 LPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPG-PAGPKGNLG-SKGERGSPG-- 757
Query: 236 PSRSLGEAGG----ERPARALRRPRAPGRAGGGGPPG 268
P GE G + A + A G G GPPG
Sbjct: 758 PKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPG 794
Score = 54.7 bits (130), Expect = 1e-07
Identities = 81/311 (26%), Positives = 102/311 (32%), Gaps = 69/311 (22%)
Query: 6 GPRRLAGLQRTPAAYAN---EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
G + G + P Y + + GR G G + ++ G G P
Sbjct: 782 GAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMP-- 839
Query: 63 RVSAPPPAPPPPPPPGGP-------SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG 115
PP P PP PPG P + S RP PG PGP G + G G G
Sbjct: 840 ---GPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEV-GPPGPPG 895
Query: 116 RLRCSAAALSAAQRG--------GPARAQVPPALRTF----SPGPASPPRASPGGRPGSE 163
+ L A +G G + P F PGP PP P G PG
Sbjct: 896 QFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPP--GPRGYPG-- 951
Query: 164 ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
G G E R P GP G G+G ++ Q P GPP P GP G
Sbjct: 952 IPGPKG-ESIRGQPGPPGPQGPPGIG------YEGRQGPP-GPPGP------PGPPSFPG 997
Query: 224 VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
+RQ + P PG G GPPG + + R
Sbjct: 998 PHRQ-----------------------TISVPGPPGPPGPPGPPGTMGASSGVRLWATRQ 1034
Query: 284 AALGGLPSILE 294
A LG + + E
Sbjct: 1035 AMLGQVHEVPE 1045
Score = 46.6 bits (109), Expect = 3e-05
Identities = 81/281 (28%), Positives = 96/281 (34%), Gaps = 49/281 (17%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA 70
G+ P A A + G G G AG + + RG S G G P P
Sbjct: 645 GVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG--SRGEKGDPGKDGVGQPGL 702
Query: 71 PPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRR--ASCSGRAGSAGRLRCSAAALSAA 127
P PP PPG + G+ +S PGP GR A G AG G L S
Sbjct: 703 PGPPGPPGPVVYVSE-----QDGSVLSVPGPEGRPGFAGFPGPAGPKGNLG------SKG 751
Query: 128 QRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASG 187
+RG P P PG P GG G +G G R P +G PG G
Sbjct: 752 ERGSPG-----PKGEKGEPGSIFSP---DGGALGPAQKGAKGEPGFRGPPGPYGRPGYKG 803
Query: 188 -VGSERDRKFQLHQTPARGPPFPGISGM-----TRGPVVLSGVNRQHRWPPGASPSRSLG 241
+G P R P PG++G+ G L R PPG P G
Sbjct: 804 EIG-----------FPGR-PGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG--PPGPPG 849
Query: 242 EAG----GERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
G RP PG G GPPG +GP
Sbjct: 850 PPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGP 890
Score = 40.8 bits (94), Expect = 0.002
Identities = 81/285 (28%), Positives = 98/285 (34%), Gaps = 59/285 (20%)
Query: 33 DEEGAAG-AGSKLW-RRPRGAVSAGAPGSPLYRVSAPPPAPPPP---------------- 74
D +GA+G +GS L R GA P R+ APPP PP
Sbjct: 243 DSDGASGDSGSGLGDARELLREETGAALKP--RLPAPPPVTTPPLAGGSSTEDSRSEEVE 300
Query: 75 -----------PPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
PG S S + PG V G L + G G GR +
Sbjct: 301 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSP 360
Query: 124 LSAAQRGGPARAQ----VPPALRTFSPGPASPPRASPGGRPGSEAR-GRSGAECARRVPL 178
G P PAL+T PGP PP P GR G+ R G G P
Sbjct: 361 CLPGPPGLPCPVSPLGPAGPALQTV-PGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPG 417
Query: 179 HHGPPGASG----VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA 234
GP G G VG + D+ RGPP P +GP G + +H
Sbjct: 418 DTGPQGFPGTPGDVGPKGDKGDP--GVGERGPPGP------QGPPGPPGPSFRH----DK 465
Query: 235 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 279
+ +G ALR PR G G GPP G+P PG
Sbjct: 466 LTFIDMEGSGFGGDLEALRGPR--GFPGPPGPP--GVPGLPGEPG 506
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 63.2 bits (152), Expect = 3e-10
Identities = 89/305 (29%), Positives = 101/305 (33%), Gaps = 57/305 (18%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAP 71
G RTP E L G+ E G G + AG PGSP P P
Sbjct: 504 GSVRTPGGRVKEGGL--KGQKGEPGVPGPPGR----------AGPPGSPCL------PGP 545
Query: 72 PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGG 131
P P P P P PG PGP GR + GR G G +G
Sbjct: 546 PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGT-PGRDGEPGDPGEDGKPGDTGPQGF 604
Query: 132 PAR-AQVPPALRTFSPGPASPPRASPGGRPGS---------------EARGRSGAECARR 175
P V P PG P G PG E G G A R
Sbjct: 605 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALR 664
Query: 176 VPLHH----GPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLSGVNRQ--- 227
P GPPG G+ E R F ++ + GP PG+ G GP G+
Sbjct: 665 GPRGFPGPPGPPGVPGLPGEPGR-FGVNSSDVPGPAGLPGVPGR-EGPPGFPGLPGPPGP 722
Query: 228 --HRWPPGASPSR-SLGEAGGER---------PARALRRPRAPGRAGGGGPPGGGIPACS 275
PPG + + SLGEAG PA A G G GPPG P
Sbjct: 723 PGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGP 782
Query: 276 IGPGL 280
GPGL
Sbjct: 783 PGPGL 787
Score = 57.0 bits (136), Expect = 2e-08
Identities = 81/277 (29%), Positives = 97/277 (35%), Gaps = 25/277 (9%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVS-AGAPGSP 60
GP GL P E +G+ G AGA GSK P GA +G G+P
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 768
Query: 61 LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRP---GAFVSPGPLGRRASCSGRAGSAGRL 117
PP PP PP PG P+ + P A + GP G G G G
Sbjct: 769 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQG-PPGLPGLKGDPGVP 827
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEARGRSGAECARR 175
A G P +P P R S G G PG + G+ G
Sbjct: 828 GLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPG------ 881
Query: 176 VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS 235
+P GPPG SE+D P P F G G GP G ++ R PG
Sbjct: 882 LPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPG-PAGPKGNLG-SKGERGSPG-- 937
Query: 236 PSRSLGEAGG----ERPARALRRPRAPGRAGGGGPPG 268
P GE G + A + A G G GPPG
Sbjct: 938 PKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPG 974
Score = 54.7 bits (130), Expect = 1e-07
Identities = 81/311 (26%), Positives = 102/311 (32%), Gaps = 69/311 (22%)
Query: 6 GPRRLAGLQRTPAAYAN---EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
G + G + P Y + + GR G G + ++ G G P
Sbjct: 962 GAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMP-- 1019
Query: 63 RVSAPPPAPPPPPPPGGP-------SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG 115
PP P PP PPG P + S RP PG PGP G + G G G
Sbjct: 1020 ---GPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEV-GPPGPPG 1075
Query: 116 RLRCSAAALSAAQRG--------GPARAQVPPALRTF----SPGPASPPRASPGGRPGSE 163
+ L A +G G + P F PGP PP P G PG
Sbjct: 1076 QFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPP--GPRGYPG-- 1131
Query: 164 ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
G G E R P GP G G+G ++ Q P GPP P GP G
Sbjct: 1132 IPGPKG-ESIRGQPGPPGPQGPPGIG------YEGRQGPP-GPPGP------PGPPSFPG 1177
Query: 224 VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
+RQ + P PG G GPPG + + R
Sbjct: 1178 PHRQ-----------------------TISVPGPPGPPGPPGPPGTMGASSGVRLWATRQ 1214
Query: 284 AALGGLPSILE 294
A LG + + E
Sbjct: 1215 AMLGQVHEVPE 1225
Score = 46.6 bits (109), Expect = 3e-05
Identities = 81/281 (28%), Positives = 96/281 (34%), Gaps = 49/281 (17%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA 70
G+ P A A + G G G AG + + RG S G G P P
Sbjct: 825 GVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG--SRGEKGDPGKDGVGQPGL 882
Query: 71 PPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRR--ASCSGRAGSAGRLRCSAAALSAA 127
P PP PPG + G+ +S PGP GR A G AG G L S
Sbjct: 883 PGPPGPPGPVVYVSE-----QDGSVLSVPGPEGRPGFAGFPGPAGPKGNLG------SKG 931
Query: 128 QRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASG 187
+RG P P PG P GG G +G G R P +G PG G
Sbjct: 932 ERGSPG-----PKGEKGEPGSIFSP---DGGALGPAQKGAKGEPGFRGPPGPYGRPGYKG 983
Query: 188 -VGSERDRKFQLHQTPARGPPFPGISGM-----TRGPVVLSGVNRQHRWPPGASPSRSLG 241
+G P R P PG++G+ G L R PPG P G
Sbjct: 984 EIG-----------FPGR-PGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG--PPGPPG 1029
Query: 242 EAG----GERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
G RP PG G GPPG +GP
Sbjct: 1030 PPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGP 1070
Score = 40.8 bits (94), Expect = 0.002
Identities = 81/285 (28%), Positives = 98/285 (34%), Gaps = 59/285 (20%)
Query: 33 DEEGAAG-AGSKLW-RRPRGAVSAGAPGSPLYRVSAPPPAPPPP---------------- 74
D +GA+G +GS L R GA P R+ APPP PP
Sbjct: 423 DSDGASGDSGSGLGDARELLREETGAALKP--RLPAPPPVTTPPLAGGSSTEDSRSEEVE 480
Query: 75 -----------PPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
PG S S + PG V G L + G G GR +
Sbjct: 481 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSP 540
Query: 124 LSAAQRGGPARAQ----VPPALRTFSPGPASPPRASPGGRPGSEAR-GRSGAECARRVPL 178
G P PAL+T PGP PP P GR G+ R G G P
Sbjct: 541 CLPGPPGLPCPVSPLGPAGPALQTV-PGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPG 597
Query: 179 HHGPPGASG----VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA 234
GP G G VG + D+ RGPP P +GP G + +H
Sbjct: 598 DTGPQGFPGTPGDVGPKGDKGDP--GVGERGPPGP------QGPPGPPGPSFRH----DK 645
Query: 235 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 279
+ +G ALR PR G G GPP G+P PG
Sbjct: 646 LTFIDMEGSGFGGDLEALRGPR--GFPGPPGPP--GVPGLPGEPG 686
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 62.4 bits (150), Expect = 5e-10
Identities = 88/292 (30%), Positives = 99/292 (33%), Gaps = 55/292 (18%)
Query: 26 LAISGRADEEGAAGAGSKLWRRPRGAVS-AGAPGSPLYRVSAPPPAPPPPPPPGGPSRSE 84
+A+ G G G PRG +G PG P Y P P PPG PS
Sbjct: 53 IAVRGEQGTPGPPGPAG-----PRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPG-PSAVG 106
Query: 85 RPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTF 144
+P PG GP G + G G AG L GPA VP
Sbjct: 107 KPGVPGLPGKPGERGPYGPK----GDVGPAG-LPGPRGPPGPPGIPGPAGISVPGKPGQQ 161
Query: 145 SPGPASPPRASPG-----------GRPGSEARGRSGAECARRVPLHHGPPGASGV----- 188
P A PR PG G+ G G G R +P GP G SG
Sbjct: 162 GPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGK 221
Query: 189 ----------GSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSR 238
G + DR F P GPP P RGP G+ + PGA+
Sbjct: 222 RGENGVPGQPGIKGDRGFPGEMGPI-GPPGPQGPPGERGP---EGIGK-----PGAA--- 269
Query: 239 SLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 290
G G P APG AG GPPG G P PGL GLP
Sbjct: 270 --GAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGL---PGLKGERGPAGLP 316
Score = 62.0 bits (149), Expect = 6e-10
Identities = 94/318 (29%), Positives = 120/318 (37%), Gaps = 59/318 (18%)
Query: 30 GRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR--VSAPPPAPPPPPP----PGGPS-R 82
G E G G G +P A + G PG P + AP A PP PP PG P +
Sbjct: 253 GPPGERGPEGIG-----KPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLK 307
Query: 83 SERPRAGLR--PGAFVSPGPLGR--RASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVP 138
ER AGL PGA GP G + +G G+ G +G P +P
Sbjct: 308 GERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMG---------PQGPKGIPGSHGLP 358
Query: 139 -PALRTFSPGPASPP-----RASPG--------GRPGSEA-RGRSGAECARRVPLHHGPP 183
P T GPA P R SPG G+PG + +G G + P GPP
Sbjct: 359 GPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPP 418
Query: 184 GASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--------NRQHRWPPGA 234
G G VG + H A PGI G TRGP+ G+ + PPG
Sbjct: 419 GLPGPVGPAGAKGMPGHNGEAGPRGAPGIPG-TRGPIGPPGIPGFPGSKGDPGSPGPPGP 477
Query: 235 SPSRS------LGEAGGERPARALRRPRAPGRAGGGGPPGGGI-PACSIGPGLARLAALG 287
+ + G G P P PG G GPPG + P I G + +L
Sbjct: 478 AGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKAG--QRPSLS 535
Query: 288 GLPSILESSRLLPSPRSS 305
G P + + + P S+
Sbjct: 536 GTPLVSANQGVTGMPVSA 553
Score = 52.4 bits (124), Expect = 5e-07
Identities = 83/310 (26%), Positives = 97/310 (31%), Gaps = 43/310 (13%)
Query: 6 GPRRLAGLQRTPAA-----YANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAG---A 56
GPR G + P E GR E G G G P G G
Sbjct: 168 GPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGV 227
Query: 57 PGSPLYRVSAP---------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASC 107
PG P + PP P PP GP +P A PG PG G
Sbjct: 228 PGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKG-LPGA 286
Query: 108 SGRAGSAGRLRCSAAALSAAQ-RGGPARAQVPPALRTFSPGPASPPRASPGGRPG-SEAR 165
G AG G L + GPA P + GPA P G+PG +
Sbjct: 287 PGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKG-EQGPAGLP-----GKPGLTGPP 340
Query: 166 GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM---- 214
G G + + +P HG PG G RG P +PG G+
Sbjct: 341 GNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPK 400
Query: 215 ----TRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-G 269
GP GV P P+ + G G A P PG G GPPG
Sbjct: 401 GNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIP 460
Query: 270 GIPACSIGPG 279
G P PG
Sbjct: 461 GFPGSKGDPG 470
Score = 39.3 bits (90), Expect = 0.004
Identities = 70/240 (29%), Positives = 76/240 (31%), Gaps = 68/240 (28%)
Query: 55 GAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSA 114
G PG P + P P P PPG P G PG PGP S G+ G
Sbjct: 60 GTPGPP--GPAGPRGHPGPSGPPGKPGYGSPGLQG-EPGLPGPPGP-----SAVGKPGVP 111
Query: 115 GRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAEC 172
G +RG GP P L PGP PP P G PG G
Sbjct: 112 G------LPGKPGERGPYGPKGDVGPAGL----PGPRGPP--GPPGIPGPAGISVPGK-- 157
Query: 173 ARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPP 232
P GP GA G RG FPG G P G+N Q
Sbjct: 158 ----PGQQGPTGAPG---------------PRG--FPGEKGAPGVP----GMNGQK---- 188
Query: 233 GASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSI 292
GE G P R PG G GP G P+ G G + G P I
Sbjct: 189 --------GEMGYGAPGR-------PGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGI 233
Score = 37.0 bits (84), Expect = 0.022
Identities = 50/199 (25%), Positives = 66/199 (33%), Gaps = 21/199 (10%)
Query: 30 GRADEEGAAGAGSKLWRRPRGAVSA--GAPGSPLYRVSAPPPAPPPPPPPGGPSRSE--- 84
G E G+ G+ K + + G PG P + PP P P GP+ ++
Sbjct: 374 GAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMP 433
Query: 85 --RPRAGLR--PGAFVSPGPLGRRA-----SCSGRAGSAGRLRCSAAALSAAQRGGPARA 135
AG R PG + GP+G G GS G A ++ GP
Sbjct: 434 GHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPP--GPAGIATKGLNGPTGP 491
Query: 136 QVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARR-----VPLHHGPPGASGVGS 190
PP R S P P P G PG + +R PL G +G+
Sbjct: 492 PGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMPV 551
Query: 191 ERDRKFQLHQTPARGPPFP 209
PA G P P
Sbjct: 552 SAFTVILSKAYPAIGTPIP 570
Score = 35.0 bits (79), Expect = 0.084
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-AGAPGSPLYRV 64
GPR G+ T G + G+ G +G G PG P R
Sbjct: 440 GPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRG 499
Query: 65 -SAPPPAPPPPPPPGGPSRSERP----RAGLRPGAFVSP 98
S P P PP PPG P ++ P +AG RP +P
Sbjct: 500 HSGEPGLPGPPGPPGPPGQAVMPEGFIKAGQRPSLSGTP 538
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 61.2 bits (147), Expect = 1e-09
Identities = 80/286 (27%), Positives = 104/286 (36%), Gaps = 55/286 (19%)
Query: 29 SGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRA 88
+G+A EEG G+ + + G PG P Y P P P GP E+ ++
Sbjct: 769 AGQAGEEGPPGSAGEKGK-------LGVPGLPGYPGRPGPKGSIGFPGPLGPI-GEKGKS 820
Query: 89 GL--RPGAFVSPGPLGRRAS-----CSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPAL 141
G +PG GP G R +G+ G G + A ++G P Q PP
Sbjct: 821 GKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPG-LQGPPGF 879
Query: 142 RTFSPGPASPP-RASPGGRPGSEA-RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLH 199
PGP PP GRPG RG G + GPPG +GV + + ++
Sbjct: 880 ----PGPKGPPGHQGKDGRPGHPGQRGELGFQGQT------GPPGPAGVLGPQGKTGEVG 929
Query: 200 QTPARGPP----------FPGISGM--------------TRGPVVLSGVNRQHRWPPGAS 235
RGPP PG+ G GP L G P
Sbjct: 930 PLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPG 989
Query: 236 PSRSLGEAGGERPARALRRP--RAP-GRAGGGGPPGGGIPACSIGP 278
P+ G+ G P A P R P G AGG G PG +GP
Sbjct: 990 PTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGP 1035
Score = 58.5 bits (140), Expect = 7e-09
Identities = 88/326 (26%), Positives = 105/326 (32%), Gaps = 70/326 (21%)
Query: 4 SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR 63
S GP G + +E + G + GA G + RG AG PG
Sbjct: 1167 SMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGE-----RG--DAGDPG----- 1214
Query: 64 VSAPPPAPPPPPPPG--------GPSRSERPRAGLRP----GAFVSPGPLGRRASCSGRA 111
PP AP P P G GPS + P P GA S GP G G
Sbjct: 1215 ---PPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTG----LPGDL 1267
Query: 112 GSAGRLRCSAAALSAAQRGGPARAQVP-PALRTFSPGPASPP-RASPGGRPGSEAR---- 165
G G S S ++G P P P + PG PP + P G G E R
Sbjct: 1268 GPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEK 1327
Query: 166 ------------GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP------ 207
GR+G AR P GP G G+ L GPP
Sbjct: 1328 GAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPS 1387
Query: 208 -FPGISGMTR--------------GPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARAL 252
PG+ G T GP +G P P G+ G P +L
Sbjct: 1388 GLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSL 1447
Query: 253 RRPRAPGRAGGGGPPGGGIPACSIGP 278
P PG AG G G S+GP
Sbjct: 1448 GHPGPPGVAGPLGQKGSKGSPGSMGP 1473
Score = 57.8 bits (138), Expect = 1e-08
Identities = 83/270 (30%), Positives = 101/270 (37%), Gaps = 57/270 (21%)
Query: 30 GRADEEGAAGAGSKLWRRPRGAVSA-GAPGSP----LYRVSAPPPAPPPPPPPGGPSRSE 84
G E G GA + P+G V GAPG P L + PP P P PPG +
Sbjct: 836 GSRGERGQPGATGQ--PGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDG 893
Query: 85 RP-RAGLR-----PGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPA 133
RP G R G PGP G G+ G G L +RG GP
Sbjct: 894 RPGHPGQRGELGFQGQTGPPGPAGVLGP-QGKTGEVGPL---------GERGPPGPPGPP 943
Query: 134 RAQVPPAL--RTFSPGPASPP-----------RASPGGRPGSEARGRSGAECARRVPLHH 180
Q P L R + G PP R PG + G G +G + +
Sbjct: 944 GEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDK------ 997
Query: 181 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPSR 238
GPPG G + L PA G PG SG + GPV +G +R R PPG +
Sbjct: 998 GPPGPVGANGSPGERGPL--GPAGGIGLPGQSG-SEGPVGPAGKKGSRGERGPPGPT--- 1051
Query: 239 SLGEAGGERPARALRRPRAPGRAGGGGPPG 268
G+ G P L P A G +G G G
Sbjct: 1052 --GKDGIPGPLGPLGPPGAAGPSGEEGDKG 1079
Score = 55.8 bits (133), Expect = 5e-08
Identities = 90/335 (26%), Positives = 107/335 (31%), Gaps = 46/335 (13%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
GP G+ A SG ++G GA G K + +G AG PG P R
Sbjct: 1049 GPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKG--DAGPPGQPGIRG 1106
Query: 65 SAPPPAPPPPP-------PPG--GPSRSERPRAGLR----PGAFVSPGPLGRRASCS--- 108
A P PP PPG G + R + PG PGP G +
Sbjct: 1107 PAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVG 1166
Query: 109 --GRAGSAGRLRCSAAALSAAQRGGPARAQVPPALR-------TFSPGPASPPRASPGGR 159
G G+ G S G P P A+ PGP P PG +
Sbjct: 1167 SMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAP-GIPGPK 1225
Query: 160 PGSEARGRSGAECARRVPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMTR-- 216
+G SG A P GPPG G GS P P GI G
Sbjct: 1226 GDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEK 1285
Query: 217 ---------GPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPP 267
GP SG P PS +G G E A P G G GP
Sbjct: 1286 GDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPM 1345
Query: 268 GGGIPACSIGPGLARLAALGGLPSILESSRLLPSP 302
G P +GP L G+P + LL +P
Sbjct: 1346 GARGPPGRVGP-----EGLRGIPGPVGEPGLLGAP 1375
Score = 54.7 bits (130), Expect = 1e-07
Identities = 92/320 (28%), Positives = 113/320 (35%), Gaps = 65/320 (20%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSA-GAPGSPLYR 63
GPR L G P GR +GA G G + RG G PG R
Sbjct: 512 GPRGLQGPHGPPGRVGK------MGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQR 565
Query: 64 VS---APPPAPPP---------PPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--SCSG 109
P PP PP P G + PR L P SPGP GR G
Sbjct: 566 GDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRG--SPGPTGRPGVTGIDG 623
Query: 110 RAGSAGRLRCSAAALSAAQRGGPARAQVP-PALRTFSPGPASPPRASPG--GRPGSEA-- 164
G+ G + Q+G +P P +PG PP +PG G PGS+
Sbjct: 624 APGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPP-GNPGIPGLPGSDGPL 682
Query: 165 -----RGRSGAECARRVPLHHGPPGASGV----GSERDRKFQLHQTPARGPPFPGISGMT 215
G +G + A+ P GPPG G G+ +R Q + FPG
Sbjct: 683 GHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGF---- 738
Query: 216 RGPVVLSGVNRQHRWPPGA----------SPSRSLGEAGGERPARA------LRRPRAPG 259
+G V L G + PGA P G+AG E P + L P PG
Sbjct: 739 KGDVGLKG----DQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPG 794
Query: 260 RAGGGGPPGG-GIPACSIGP 278
G GP G G P +GP
Sbjct: 795 YPGRPGPKGSIGFPG-PLGP 813
Score = 49.3 bits (116), Expect = 4e-06
Identities = 80/288 (27%), Positives = 105/288 (36%), Gaps = 35/288 (12%)
Query: 18 AAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPP-PPP 76
A Y + I A E+GA G + + + + GAPG + PP PP P
Sbjct: 358 AEYPSRTQFQIFPGAGEKGAKGEPAVIEKGQQFEGPPGAPGPQGVVGPSGPPGPPGFPGD 417
Query: 77 PGGPSRSERPRA----GLR--PGAFVSPGPLGRRASCSGRAGSAGRLRCSAA--ALSAAQ 128
PG P + P G+R PG + S G S + + A +
Sbjct: 418 PGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSM 477
Query: 129 RGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPPGASG 187
+G P P T PGP P G PG + G G + R + HGPPG G
Sbjct: 478 KGPPG-----PVGLTGRPGPVGLP-----GHPGLKGEEGAEGPQGPRGLQGPHGPPGRVG 527
Query: 188 ----VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
G++ R P F G+ G+ G G + H PG P GE
Sbjct: 528 KMGRPGADGARGLPGDTGPKGDRGFDGLPGLP-GEKGQRG-DFGHVGQPG--PPGEDGER 583
Query: 244 GGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP-GLARLAALGGLP 290
G E P P G+AG GP G P S GP G + + G P
Sbjct: 584 GAEGP------PGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAP 625
Score = 46.6 bits (109), Expect = 3e-05
Identities = 84/289 (29%), Positives = 100/289 (34%), Gaps = 50/289 (17%)
Query: 14 QRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPP- 72
Q A + L++ G G G RP G PG + P P
Sbjct: 463 QAQAQAVLQQTQLSMKGPPGPVGLTG-------RPGPVGLPGHPGLKGEEGAEGPQGPRG 515
Query: 73 ---PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--------SCSGRAGSAGRLRCSA 121
P PPG + RP A G GP G R G+ G G +
Sbjct: 516 LQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPG 575
Query: 122 AALSAAQRGGPARAQVPPALRTFSPGPAS--PPRASPG--GRPG-SEARGRSGAECARRV 176
+RG A P + PGP PR SPG GRPG + G GA+
Sbjct: 576 PPGEDGERG--AEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGP 633
Query: 177 PLHHGPPGASGV-GSERDRKFQ-LHQTPA-RGPPF-PGISGMTRGPVVLSGVNRQHRWPP 232
P GPPG G GS+ Q L TP +GPP PGI G+ P
Sbjct: 634 PGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGL-----------------P 676
Query: 233 GASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGL 280
G+ LG G E P PG AG G PG G+ S GL
Sbjct: 677 GSDGP--LGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGL 723
Score = 28.9 bits (63), Expect = 6.0
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
G + L G+Q P + G G G L ++ S G+PGS R
Sbjct: 1421 GDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKG----SKGSPGSMGPRGD 1476
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPL 101
P PP PPG P+ GLR P PL
Sbjct: 1477 TGPAG--PPGPPGAPAELH----GLRRRRRFVPVPL 1506
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 60.8 bits (146), Expect = 1e-09
Identities = 70/221 (31%), Positives = 85/221 (38%), Gaps = 31/221 (14%)
Query: 46 RRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPP---GGPSRSERPRAGLRPGAFVSPGPLG 102
R PRGA +A A +P P PAPPPPP P P+R+ R A A SPGP
Sbjct: 113 RAPRGAPAAAAAAAP-----PPTPAPPPPPAPVAAAAPARAPRAAAAAAT-APPSPGPAQ 166
Query: 103 RRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFS------PGPASPPRAS- 155
A A AA + A GP RA PPA+ P P +PP+
Sbjct: 167 PGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAP-PPAVAAREPPLPPPPQPPAPPQQQQ 225
Query: 156 ---PGGRPGSEARGRSGAECARRVPLHH-----GPPGASGVGSERDRKFQL--HQTPARG 205
P +P E AR V L G G +G R R L + ARG
Sbjct: 226 PPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARG 285
Query: 206 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGE 246
+ G + L +R R PP AS S + GGE
Sbjct: 286 ----RLERTRLGALALPRGDRPGRAPPAASARPSRSKRGGE 322
Score = 48.5 bits (114), Expect = 7e-06
Identities = 73/262 (27%), Positives = 86/262 (32%), Gaps = 30/262 (11%)
Query: 49 RGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS 108
R + GS YR +A P P P R+ R A P P
Sbjct: 80 RAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAP 139
Query: 109 GRAGSAGRL-RCSAAALSAAQRGGPA----RAQVPPALRTFSPGPASPPRASPGGRPGSE 163
A + R R +AAA +A GPA RAQ L P PA+PP +P P
Sbjct: 140 VAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAP---PAGP 196
Query: 164 ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRG-----P 218
R A AR PL P + Q Q P P P G R P
Sbjct: 197 RRAPPPAVAAREPPLPPPP--------QPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARP 248
Query: 219 VVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGG------GGPPGGGIP 272
V L V R GA + G G A R R G G PG P
Sbjct: 249 VSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRAPP 308
Query: 273 ACSIGPGLARLAALGGLPSILE 294
A S P ++ GG +LE
Sbjct: 309 AASARPSRSK---RGGEERVLE 327
Score = 34.7 bits (78), Expect = 0.11
Identities = 54/181 (29%), Positives = 63/181 (34%), Gaps = 39/181 (21%)
Query: 19 AYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPP------ 72
A A AA A + G A G R R A A P +P + PPA P
Sbjct: 146 ARAPRAAAAAATAPPSPGPAQPGP---RAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPP 202
Query: 73 -----------PPPPPGGPSRSERPRAGLRP---GAFVSPGPLGRRAS-------CSGRA 111
PP PP P + + P +P G V G R S G
Sbjct: 203 AVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSG 262
Query: 112 GSAGRL-RCSAAAL---SAAQRGGPARAQVPPAL--RTFSPGPASPPRASPGGRPGSEAR 165
G+ GRL R L AA RG R ++ R PG A PP AS RP R
Sbjct: 263 GAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRA-PPAAS--ARPSRSKR 319
Query: 166 G 166
G
Sbjct: 320 G 320
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 60.5 bits (145), Expect = 2e-09
Identities = 74/246 (30%), Positives = 87/246 (35%), Gaps = 34/246 (13%)
Query: 50 GAVSAGAPGSPLYRVSAPPPAPP-----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRR 104
GA G PG P P P P P PPG P P PG G G R
Sbjct: 232 GAGPTGPPGEP----GDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGAR 287
Query: 105 A--SCSGRAGSAGRLRCSAAALSAAQRGGP-ARAQVPPALRTFSPGPASPPRASPGGRPG 161
G G G + G P ++ + P + GP P R PG R
Sbjct: 288 GFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP-RGMPGERGR 346
Query: 162 SEARGRSGAECARRVPLHHGP------PGASGVGSERDRKFQLHQTPARGPPFP-GISGM 214
+G G A +P GP PG+SG K + T ARGP P G G
Sbjct: 347 LGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGE 406
Query: 215 TR--GPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIP 272
T GPV G+ PGA + G G + P + P G G GPPG P
Sbjct: 407 TGPPGPVGSPGL-------PGAIGTD--GTPGAKGPTGS---PGTSGPPGSAGPPGSPGP 454
Query: 273 ACSIGP 278
S GP
Sbjct: 455 QGSTGP 460
Score = 58.2 bits (139), Expect = 9e-09
Identities = 89/317 (28%), Positives = 109/317 (34%), Gaps = 62/317 (19%)
Query: 30 GRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS-------- 81
GR + G AG P G G PG P P PP P G +
Sbjct: 951 GRVGDRGPAGP-------PGGPGDKGDPGED------GQPGPDGPPGPAGTTGQRGIVGM 997
Query: 82 ---RSERPRAGLRPGAFVSPGPLGRRASCS-----------------------GRAGSAG 115
R ER GL PG +PG +G + G AG+ G
Sbjct: 998 PGQRGERGMPGL-PGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDG 1056
Query: 116 RLRCSAAALSAAQRGGPARAQVPPALRT-FSPGPASPP-----RASPGGRPGSEARGRSG 169
A RG P A +P + +PGP P R PG R GR+G
Sbjct: 1057 TPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAG 1116
Query: 170 AECARRVPLHHGPPGASGVGSER-DRKFQLHQ--TPARGPPFPGISGMTRGPVVLSGVNR 226
R +P GP G G +R DR + H+ T +G P P +G + G
Sbjct: 1117 K---RGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFG 1173
Query: 227 QHRWPPG-ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAA 285
R PPG PS G G P + G AG GPPG P GP AA
Sbjct: 1174 P-RGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAA 1232
Query: 286 LGGLPSILESSRLLPSP 302
LG + + S P P
Sbjct: 1233 LGDIMGHYDESMPDPLP 1249
Score = 57.8 bits (138), Expect = 1e-08
Identities = 82/303 (27%), Positives = 106/303 (34%), Gaps = 64/303 (21%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP+ +G P N G ++G G P G V G PG R
Sbjct: 618 GPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVG--------PSGPV--GPPGLAGERGE 667
Query: 66 APPPAPPP----PPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSA 121
PP P P PPG P +P PG + GPLG R G G G +
Sbjct: 668 QGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGE-RGNPGERGEPGITG 726
Query: 122 AALSAAQRG--GPARAQVPPALRTFSPGPASPP--RASPG-----GRPGSE--------- 163
G GP + P + +PG PP + PG G PG +
Sbjct: 727 LPGEKGMAGGHGPDGPKGSPG-PSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEK 785
Query: 164 -ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLS 222
A G +G + AR +P GPPG +G E+ PG G+ P
Sbjct: 786 GAEGTAGNDGARGLPGPLGPPGPAGPTGEKGE--------------PGPRGLVGPP---- 827
Query: 223 GVNRQHRWPPGA----SPSRSLGEAGGERP---ARALRRPRAPGRAGGGGPPGGGIPACS 275
R PG+ P+ ++G AG + P P PG+ G G PG A S
Sbjct: 828 ----GSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGS 883
Query: 276 IGP 278
GP
Sbjct: 884 PGP 886
Score = 57.4 bits (137), Expect = 2e-08
Identities = 85/288 (29%), Positives = 100/288 (34%), Gaps = 45/288 (15%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----SAGAPGSPL 61
GPR + G L G + GA G K P G + S+G PG+P
Sbjct: 336 GPRGMPG---------ERGRLGPQGAPGQRGAHGMPGK--PGPMGPLGIPGSSGFPGNPG 384
Query: 62 YRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRLRC 119
+ A P P P G P PG SPG G + G G G
Sbjct: 385 MKGEAGPTGARGPEGPQGQRGETGP-----PGPVGSPGLPGAIGTDGTPGAKGPTGSPGT 439
Query: 120 SAAALSAAQRG--GPARAQVPPALRTFSPGPASPP---RASPGGRPGSEA-------RGR 167
S SA G GP + P +R P P A P G PG G
Sbjct: 440 SGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGE 499
Query: 168 SGAECARRVPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNR 226
G R P GPPG G G+ +R F + G P P + RGPV SG
Sbjct: 500 EGKRGPRGDPGTVGPPGPVGERGAPGNRGFP----GSDGLPGPKGAQGERGPVGSSGPKG 555
Query: 227 QHRWP-----PGASPSRSL-GEAGGERPARALRRPRAPGRAGGGGPPG 268
P PG +R L G G + P L APG G GPPG
Sbjct: 556 SQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPG 603
Score = 55.1 bits (131), Expect = 8e-08
Identities = 85/290 (29%), Positives = 97/290 (33%), Gaps = 51/290 (17%)
Query: 4 SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVSAGAPGS 59
S GP+ LAG +P + + G +G GA GS P G A P
Sbjct: 874 SPGPQGLAG---SPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAG 930
Query: 60 PLYRVSAPPPAP--------------PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGR-- 103
PL P P PPGGP P +PG PGP G
Sbjct: 931 PLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTG 990
Query: 104 RASCSGRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPPRAS-PGGRP 160
+ G G G A G GP A PGP PP ++ P G P
Sbjct: 991 QRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKG----PPGPVGPPGSNGPVGEP 1046
Query: 161 GSEARGRSGAECARRVPLHHGPPGASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPV 219
G E G +G + G PG G VG DR PA P G G T GPV
Sbjct: 1047 GPE--GPAG---------NDGTPGRDGAVGERGDRG---DPGPAGLPGSQGAPG-TPGPV 1091
Query: 220 VLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAP-GRAGGGGPPG 268
G Q P P G AG R L P+ P G G G G
Sbjct: 1092 GAPGDAGQRGDPGSRGPIGPPGRAG----KRGLPGPQGPRGDKGDHGDRG 1137
Score = 52.4 bits (124), Expect = 5e-07
Identities = 77/271 (28%), Positives = 91/271 (33%), Gaps = 46/271 (16%)
Query: 28 ISGRADEEGAAGAGSKLWRR----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRS 83
+ G A GA G +R P G V G+PG P P P G P S
Sbjct: 385 MKGEAGPTGARGPEGPQGQRGETGPPGPV--GSPGLP--GAIGTDGTPGAKGPTGSPGTS 440
Query: 84 ERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT 143
P + PG SPGP G G G G A +G P P ++
Sbjct: 441 GPPGSAGPPG---SPGPQGSTGP-QGIRGQPGDPGVPGFKGEAGPKGEPG----PHGIQ- 491
Query: 144 FSPGPASPP----RASPGGRPGSEAR----GRSGAECARRVPLHHGPPGASGVGSERDRK 195
GP PP + P G PG+ G GA R P G PG G ER
Sbjct: 492 ---GPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPV 548
Query: 196 FQLHQTPARGPP-------FPGISGMTRGPVV---------LSGVNRQHR-WPPGASPSR 238
++G P PG G+T P V L R PPG+ R
Sbjct: 549 GSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIR 608
Query: 239 SL-GEAGGERPARALRRPRAPGRAGGGGPPG 268
G G P + P PG AG G PG
Sbjct: 609 GQPGSMGLPGPKGSSGDPGKPGEAGNAGVPG 639
Score = 52.4 bits (124), Expect = 5e-07
Identities = 97/343 (28%), Positives = 115/343 (33%), Gaps = 65/343 (18%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSA-GAPGSPLYRVSAPPP 69
G TP A + SG G G+ G + P+G G PG P ++ A P
Sbjct: 423 GTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPK 482
Query: 70 APPPPPPPGGP--SRSERPRAGLR--PGAFVSPGPLGRRASCSGRA-------------- 111
P P GP E + G R PG PGP+G R + R
Sbjct: 483 GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQ 542
Query: 112 GSAGRLRCSAAALSAAQRGGPARAQVPPALR-TFSPGPASP-----PRASPG--GRPG-- 161
G G + S S G P +P A T +PG P P +PG GRPG
Sbjct: 543 GERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPP 602
Query: 162 --------------------SEARGRSGAECARRVPLHHGPPGASG-------VGSERDR 194
S G+ G VP G PG G VG
Sbjct: 603 GSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA 662
Query: 195 KFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWP--PGA-SPSRSLGEAG--GERPA 249
+ Q P F G+ G GP G P PGA P GE G GER
Sbjct: 663 GERGEQGPPGPTGFQGLPG-PPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGE 721
Query: 250 RALR-RPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 290
+ P G AGG GP G G P S PG L G+P
Sbjct: 722 PGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMP 764
Score = 49.7 bits (117), Expect = 3e-06
Identities = 87/282 (30%), Positives = 102/282 (36%), Gaps = 57/282 (20%)
Query: 28 ISGRADEEGAAGA-GSKLWRRPRGAVSA-------GAPGSPLYRVSAPPPAPPPPPPPGG 79
I GR G G+ G + R P+G G PG P + PP P P P G
Sbjct: 127 IRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDG 186
Query: 80 PSR---------SER----PRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSA 126
SR E+ + GL PG S GP+G R G G G A
Sbjct: 187 LSRPFSAQMAGLDEKSGLGSQVGLMPG---SVGPVGPRGP-QGLQGQQG---------GA 233
Query: 127 AQRGGPARAQVP-PALRTFSPGPASPPRASPG--GRPGSEAR----GRSGAECARRVPLH 179
G P P P S GP PP PG G PG G +G+ AR P
Sbjct: 234 GPTGPPGEPGDPGPMGPIGSRGPEGPP-GKPGEDGEPGRNGNPGEVGFAGSPGARGFP-- 290
Query: 180 HGPPGASGVGSERDRK-FQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSR 238
G PG G+ R K + + P G +G T GP+ G P G P
Sbjct: 291 -GAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPT-GPMGAMG-------PLG--PRG 339
Query: 239 SLGEAGGERPARALRRPRAPGRAGGGGPPGG-GIPACSIGPG 279
GE G P A + A G G GP G GIP S PG
Sbjct: 340 MPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPG 381
Score = 30.4 bits (67), Expect = 2.1
Identities = 36/128 (28%), Positives = 43/128 (33%), Gaps = 42/128 (32%)
Query: 148 PASPP-------RASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQ 200
P +PP +PGG + RGR G + G PG V
Sbjct: 85 PVTPPGECCPVCSQTPGGGNTNFGRGRKGQK---------GEPGLVPV-----------V 124
Query: 201 TPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGR 260
T RG P P ++GP R R P G R GE P PG+
Sbjct: 125 TGIRGRPGPAGPPGSQGP-------RGERGPKGRPGPRGPQGIDGE--------PGVPGQ 169
Query: 261 AGGGGPPG 268
G GPPG
Sbjct: 170 PGAPGPPG 177
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 60.5 bits (145), Expect = 2e-09
Identities = 83/294 (28%), Positives = 102/294 (34%), Gaps = 52/294 (17%)
Query: 38 AGAGSKLWRRPRGAVSAGAPGSP----LYRVSAPPPAPPPPPPPGGPSRSERP-RAGLR- 91
A AG++ P G PG P + + PP P PP P G P + +P AGL
Sbjct: 21 AAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPG 80
Query: 92 -------PGAFVSPGPLG---RRASCS----------GRAGSAGRLRCSAAALSAAQRGG 131
G PGP G R S G G G S RG
Sbjct: 81 LPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGP 140
Query: 132 PARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH-GPPGASGVGS 190
P + +P PGP PP P G PG G + +C P GPPG G
Sbjct: 141 PGPSGLPGL-----PGPPGPP--GPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKG 193
Query: 191 ERDRKFQLHQTPARG----PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGE 246
K + + G P PG +G+ G V L G P P G G
Sbjct: 194 PTGYKGEQGEVGKDGEKGDPGPPGPAGLP-GSVGLQGPRGLRGLPGPLGPPGDRGPIGFR 252
Query: 247 RPARALRRPRAPGRAGG---GGPPGGGIPACSIG-------PGLARLAALGGLP 290
P P APG+AG GP G P +G PG+A + G+P
Sbjct: 253 GPPGI---PGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMP 303
Score = 50.4 bits (119), Expect = 2e-06
Identities = 82/287 (28%), Positives = 98/287 (34%), Gaps = 55/287 (19%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
GP L GL P ++ GRA E G AG + P A G G +R S
Sbjct: 331 GPNGLPGL---PGRAGSKGEKGERGRAGELGEAGPSGEPGV-PGDAGMPGERGEAGHRGS 386
Query: 66 APPPAPPPPPPPGGPSRSERPRAGLR-PGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
A P PP G + + + PG PGP G R R G G AA
Sbjct: 387 AGALGPQGPPGAPGVRGFQGQKGSMGDPGL---PGPQGLRGDVGDR-GPGG------AAG 436
Query: 125 SAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPG 184
+G +P P P+ G R +G G V GPPG
Sbjct: 437 PKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPPG 496
Query: 185 ASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG--ASPSRSLGE 242
G+ PG+ G+T P V PG AS R
Sbjct: 497 PLGLQG-----------------VPGVPGITGKPGV-----------PGKEASEQRIREL 528
Query: 243 AGG------ERPARALRRPRAPG---RAGGGGPPGGGIPACSIG-PG 279
GG + A LR+P APG R G GPPG P SIG PG
Sbjct: 529 CGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPG 575
Score = 39.3 bits (90), Expect = 0.004
Identities = 43/144 (29%), Positives = 50/144 (34%), Gaps = 40/144 (27%)
Query: 46 RRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRP-GAFVSPGPLGRR 104
R+P S G PG A PP PP PP G + P P G PGP G +
Sbjct: 545 RKPLAPGSIGRPGP------AGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQ 598
Query: 105 ASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA 164
G G+AG A GP Q P P G PG+
Sbjct: 599 GD-RGDKGAAG-----------AGLDGPEGDQGPQG---------------PQGVPGTSK 631
Query: 165 RGRSGAECARRVPLHHGPPGASGV 188
G+ GA P GPPG G+
Sbjct: 632 DGQDGA------PGEPGPPGDPGL 649
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 60.1 bits (144), Expect = 2e-09
Identities = 90/335 (26%), Positives = 109/335 (32%), Gaps = 83/335 (24%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS----------- 53
GP+ G P A + G+ G G G + R PRG
Sbjct: 880 GPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGD 939
Query: 54 --AGAPGS-----PLYRVSAPPPAPPPPPP-----PGGPSRSERPRAGLR-------PGA 94
AG PG P P P PP PP PG P +R G + P
Sbjct: 940 GPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPG--QRGETGFQGKTGPPGPPG 997
Query: 95 FVSP-------GPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVP-----PALR 142
V P GP+G R G G G A +G P A +P P LR
Sbjct: 998 VVGPQGPTGETGPMGERGH-PGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLR 1056
Query: 143 TF-----------------SPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGA 185
F + GP PP P G PG RG +GA +P GP G
Sbjct: 1057 GFPGDRGLPGPVGALGLKGNEGPPGPP--GPAGSPGE--RGPAGAAGPIGIPGRPGPQGP 1112
Query: 186 SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 245
G E+ + +GP P +GPV L P A P GE G
Sbjct: 1113 PGPAGEKGAPGE------KGPQGPAGRDGLQGPVGL---------PGPAGPVGPPGEDGD 1157
Query: 246 ERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PG 279
+ + + G G GPPG P IG PG
Sbjct: 1158 KGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPG 1192
Score = 57.4 bits (137), Expect = 2e-08
Identities = 92/350 (26%), Positives = 111/350 (31%), Gaps = 118/350 (33%)
Query: 5 GGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRV 64
GGPR G + PA E + I G EG AG PG
Sbjct: 446 GGPRGEKGQKGEPAII--EPGMLIEGPPGPEGPAGL----------------PG------ 481
Query: 65 SAPPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
PP P G P P R GL PGA PGP G R G G
Sbjct: 482 --PPGTMGPTGQVGDPGERGPPGRPGL-PGADGLPGPPGTMLMLPFRFGGGGDAGSKGPM 538
Query: 124 LSAAQRGGPA---------RAQVPPALRTFSPGPASPPRAS------------------- 155
+SA + A R P T PGP PP +
Sbjct: 539 VSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQG 598
Query: 156 ---PGGRPGSEARGRSGAECARRVP---------------------LHHGPPGASG---- 187
P G+PG RGR+G++ AR +P H G PG SG
Sbjct: 599 PPGPAGKPGR--RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGP 656
Query: 188 VGSERDRKFQLHQTP--------------ARGPPF----PGISGMTRGPVVLSGVNRQ-H 228
G + +R P +GPP PG++GM P V Q
Sbjct: 657 PGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGE 716
Query: 229 RWPPG----------ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
PPG P ++G G + P L +P PG G GPPG
Sbjct: 717 PGPPGQQGNPGAQGLPGPQGAIGPPGEKGP---LGKPGLPGMPGADGPPG 763
Score = 56.2 bits (134), Expect = 4e-08
Identities = 80/295 (27%), Positives = 99/295 (33%), Gaps = 36/295 (12%)
Query: 12 GLQRTPAAYANEAALAISGRADEEGAAGA-------------GSKLWRRPRGAVSA---- 54
G Q P N A+ G E G G G K P GA
Sbjct: 1267 GPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPK 1326
Query: 55 GAPGSPLYRVSAPP---PAPPPPPPPGGPSRSERPRAGL----RPGAFVSPGPLGRRASC 107
G PG + S P P P PP GP+ + P PG SPGP G
Sbjct: 1327 GPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGP- 1385
Query: 108 SGRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPGGRPGSEA- 164
SG G G + ++G G A + PP GP P A G+PG +
Sbjct: 1386 SGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPG----KTGPIGPQGAP--GKPGPDGL 1439
Query: 165 RGRSGAECARRVPLHHGPPGASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
RG G + +P GP G G +G + P PG+ G+ GP G
Sbjct: 1440 RGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLI-GPPGEQG 1498
Query: 224 VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
P S GE G P+ + P PG G GP G + GP
Sbjct: 1499 EKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGP 1553
Score = 55.8 bits (133), Expect = 5e-08
Identities = 82/292 (28%), Positives = 99/292 (33%), Gaps = 39/292 (13%)
Query: 6 GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
GP GLQ + G ++G G G K + +G P P +
Sbjct: 1129 GPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPI 1188
Query: 65 SAPPP--APPPPPPPG-----GPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL 117
P P A P P G G E PR P PGP+G + G G G
Sbjct: 1189 GQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGP-----PGPVGLQG-LPGPPGEKGET 1242
Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGP-ASPPRASPG--GRPGSEA-RGRSGAECA 173
Q G P PP R S P A P+ PG G PG+ +G G
Sbjct: 1243 G------DVGQMGPPG----PPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGE 1292
Query: 174 RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-------GISGMTRGPVVLSGVNR 226
+P GPPG G ER K + + A GPP P G G + GPV G
Sbjct: 1293 PGLPGEGGPPGPKG---ERGEKGESGPSGAAGPPGPKGPPGDDGPKG-SPGPVGFPGDPG 1348
Query: 227 QHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
P A G+ G + P G G GPPG P GP
Sbjct: 1349 PPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGP 1400
Score = 50.1 bits (118), Expect = 3e-06
Identities = 68/246 (27%), Positives = 82/246 (33%), Gaps = 26/246 (10%)
Query: 55 GAPGSPLYRVSAPPPAPP-PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRA 111
G PG P R P PP PP PPG +P G PGP G++ + G
Sbjct: 673 GLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLP 732
Query: 112 GSAGRLRCSAAALSAAQRGGPAR--AQVPPALRTFSPGPASPPRASPG-GRPGSEA---- 164
G G + + G P A PP PG PP G G PG +
Sbjct: 733 GPQGAIGPPGEKGPLGKPGLPGMPGADGPPG----HPGKEGPPGEKGGQGPPGPQGPIGY 788
Query: 165 ---RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVL 221
RG GA+ R + G G G + GPP P GP
Sbjct: 789 PGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGR 848
Query: 222 SGVNRQ--HRWPPGASPSRSL----GEAGGERPARALRRPRAP---GRAGGGGPPGGGIP 272
G N PPG + G G + P ++ P P G GG G PG P
Sbjct: 849 GGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGP 908
Query: 273 ACSIGP 278
GP
Sbjct: 909 RGQRGP 914
Score = 45.1 bits (105), Expect = 8e-05
Identities = 63/210 (30%), Positives = 73/210 (34%), Gaps = 36/210 (17%)
Query: 4 SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSA-GAPGSP- 60
S GP G P GR E+GA G AG + G + GAPG P
Sbjct: 1376 SPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPG 1435
Query: 61 ---LYRVSAP--------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSG 109
L + P P P PP P GP GL PG GP G + G
Sbjct: 1436 PDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPP-------GL-PGLKGDSGPKGEK----G 1483
Query: 110 RAGSAGRLRCSAAALSAAQRG--GPARAQVPPALR--TFSPGPASPPRASPGGRPGSE-- 163
G G + RG GP + P + T GP PP P G PG
Sbjct: 1484 HPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPP--GPPGLPGPPGP 1541
Query: 164 --ARGRSGAECARRVPLHHGPPGASGVGSE 191
A+G SG + H GPPG G E
Sbjct: 1542 KGAKGSSGPTGPKGEAGHPGPPGPPGPPGE 1571
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,361,897
Number of Sequences: 37866
Number of extensions: 1655606
Number of successful extensions: 35595
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 1920
Number of HSP's that attempted gapping in prelim test: 12853
Number of HSP's gapped (non-prelim): 12115
length of query: 308
length of database: 18,247,518
effective HSP length: 102
effective length of query: 206
effective length of database: 14,385,186
effective search space: 2963348316
effective search space used: 2963348316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.