Guide to the Human Genome
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Name: LOC645321 Sequence: fasta or formatted (308aa) NCBI GI: 169212744
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {303aa} PREDICTED: hypothetical protein
alt mRNA {308aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         48           3
 C cysteine            1.6          5           1
 D aspartate           0.6          2           1
 E glutamate           3.2         10           2
 F phenylalanine       1.3          4           1
 G glycine            16.9         52           4
 H histidine           1.3          4           2
 I isoleucine          1.9          6           1
 K lysine              0.6          2           1
 L leucine             7.5         23           2
 M methionine          0.6          2           1
 N asparagine          0.6          2           1
 P proline            16.2         50           7
 Q glutamine           1.9          6           1
 R arginine           13.6         42           2
 S serine             10.7         33           2
 T threonine           1.3          4           1
 V valine              2.9          9           2
 W tryptophan          0.6          2           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645321             1.000   PREDICTED: hypothetical protein 
LOC645321             0.428   PREDICTED: hypothetical protein 
COL2A1                0.087   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.087   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A1                0.084   alpha 1 type I collagen preproprotein 
COL3A1                0.082   collagen type III alpha 1 preproprotein 
COL7A1                0.068   alpha 1 type VII collagen precursor 
COL6A1                0.068   collagen, type VI, alpha 1 precursor 
COL16A1               0.068   alpha 1 type XVI collagen precursor 
COL12A1               0.066   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.066   collagen, type XII, alpha 1 long isoform precursor [...
COL11A2               0.066   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.066   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.066   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL8A2                0.064   collagen, type VIII, alpha 2 
TAF4                  0.064   TBP-associated factor 4 
COL11A1               0.063   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.063   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.063   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL1A2                0.063   alpha 2 type I collagen 
COL18A1               0.063   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.063   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.063   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL10A1               0.061   type X collagen alpha 1 precursor 
COL5A3                0.059   collagen, type V, alpha 3 preproprotein 
SAMD1                 0.059   sterile alpha motif domain containing 1 
COL5A2                0.058   alpha 2 type V collagen preproprotein 
COL9A3                0.058   alpha 3 type IX collagen 
COL5A1                0.058   alpha 1 type V collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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