COL18A1 12150

Name: COL18A1	Sequence: fasta or formatted (1751aa)		NCBI GI: 206597445
Description: alpha 1 type XVIII collagen isoform 3 precursor		Referenced in: Collagen
Other entries for this name: alt prot [1336aa] alpha 1 type XVIII collagen isoform 2 precursor alt prot [1516aa] alpha 1 type XVIII collagen isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 140 4 C cysteine 1.3 23 2 D aspartate 4.2 74 2 E glutamate 5.1 90 2 F phenylalanine 3.3 57 2 G glycine 17.2 301 4 H histidine 2.1 36 2 I isoleucine 1.7 29 1 K lysine 2.4 42 1 L leucine 8.5 148 4 M methionine 0.9 15 1 N asparagine 1.5 27 2 P proline 16.8 294 3 Q glutamine 3.8 67 2 R arginine 5.2 91 2 S serine 6.9 121 2 T threonine 3.9 69 3 V valine 5.0 87 2 W tryptophan 1.2 21 1 Y tyrosine 1.1 19 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XVIII collagen isoform 3 precursor [Ho... COL18A1 0.746 alpha 1 type XVIII collagen isoform 1 precursor [Ho... COL18A1 0.745 alpha 1 type XVIII collagen isoform 2 precursor [Ho... COL15A1 0.204 alpha 1 type XV collagen precursor COL5A1 0.143 alpha 1 type V collagen preproprotein COL3A1 0.141 collagen type III alpha 1 preproprotein COL1A1 0.141 alpha 1 type I collagen preproprotein COL4A5 0.140 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.140 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.139 type IV collagen alpha 5 isoform 2 precursor COL22A1 0.138 collagen, type XXII, alpha 1 COL11A1 0.138 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.138 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.138 alpha 1 type XI collagen isoform A preproprotein [Ho... COL2A1 0.137 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.137 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A2 0.136 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL5A2 0.136 alpha 2 type V collagen preproprotein COL11A2 0.135 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL4A1 0.135 alpha 1 type IV collagen preproprotein COL11A2 0.135 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL4A4 0.132 alpha 4 type IV collagen precursor COL5A3 0.132 collagen, type V, alpha 3 preproprotein COL4A3 0.132 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.132 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.132 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.132 alpha 3 type IV collagen isoform 1 precursor LOC100293055 0.130 PREDICTED: similar to COL22A1 protein COL7A1 0.130 alpha 1 type VII collagen precursor COL27A1 0.126 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.