Guide to the Human Genome
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Search of human proteins with 169212744

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
         (308 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]           632   0.0  
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]           632   0.0  
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]           285   4e-77
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    78   1e-14
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    78   1e-14
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      76   3e-14
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      75   7e-14
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          66   3e-11
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]        66   3e-11
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        66   3e-11
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ...    65   1e-10
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [...    65   1e-10
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    65   1e-10
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    65   1e-10
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    65   1e-10
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                64   1e-10
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    64   2e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    63   3e-10
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    63   3e-10
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    63   3e-10
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     63   3e-10
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    63   3e-10
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    63   3e-10
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    63   3e-10
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           62   5e-10
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    61   1e-09
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     61   1e-09
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       60   2e-09
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   60   2e-09
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       60   2e-09

>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score =  632 bits (1629), Expect = 0.0
 Identities = 308/308 (100%), Positives = 308/308 (100%)

Query: 1   MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP 60
           MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP
Sbjct: 1   MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP 60

Query: 61  LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
           LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS
Sbjct: 61  LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120

Query: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
           AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH
Sbjct: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180

Query: 181 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240
           GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL
Sbjct: 181 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240

Query: 241 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300
           GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP
Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300

Query: 301 SPRSSACL 308
           SPRSSACL
Sbjct: 301 SPRSSACL 308


>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score =  632 bits (1629), Expect = 0.0
 Identities = 308/308 (100%), Positives = 308/308 (100%)

Query: 1   MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP 60
           MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP
Sbjct: 1   MAISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP 60

Query: 61  LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
           LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS
Sbjct: 61  LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120

Query: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
           AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH
Sbjct: 121 AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180

Query: 181 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240
           GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL
Sbjct: 181 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240

Query: 241 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300
           GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP
Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300

Query: 301 SPRSSACL 308
           SPRSSACL
Sbjct: 301 SPRSSACL 308


>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score =  285 bits (729), Expect = 4e-77
 Identities = 180/318 (56%), Positives = 197/318 (61%), Gaps = 45/318 (14%)

Query: 4   SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----------- 52
           +G  R    LQRTP  +A     A  G+A    AA   S +   PR A+           
Sbjct: 18  TGEKRPAQTLQRTPRKHA-----ASRGQAQAAAAALTPSLI---PRAAIRQSQAPDLLLA 69

Query: 53  SAGAPG--SPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
           S G  G  + L    +P     P    G P+++ R        A  SP  + RR      
Sbjct: 70  SRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR--------AAGSPTRVQRRPRPLRP 121

Query: 111 AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGA 170
           + +A RLR    +L       P  ++ P ALR  +  PA    A  GG        R   
Sbjct: 122 SRAAPRLRGEEPSLLR-----PQLSRRPRALRRSTRVPA----AGKGG-------DRRAP 165

Query: 171 ECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW 230
                VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW
Sbjct: 166 VFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW 225

Query: 231 PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 290
           PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP
Sbjct: 226 PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 285

Query: 291 SILESSRLLPSPRSSACL 308
           SILESSRLLPSPRSSACL
Sbjct: 286 SILESSRLLPSPRSSACL 303


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 92/289 (31%), Positives = 117/289 (40%), Gaps = 39/289 (13%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRG-AVSAGAPGSPLYR 63
            G R   G +    A   +    ++G     G AGA G K    P G A SAGA G+P  R
Sbjct: 765  GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 824

Query: 64   VSAPPPAPP----PPPPPGGP-SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLR 118
                PP P     PP   G P ++ E+  AG + G   +PGP G     SG  G  G   
Sbjct: 825  GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK-GDAGAPGPQGP----SGAPGPQGPTG 879

Query: 119  CSAAALSAAQRGGP-------ARAQVPPALRTFSPGPASPPRASPGGRPGSE-ARGRSGA 170
             +    +   +G P       A  +V P     +PGP  PP   P G+ G + ARG SG 
Sbjct: 880  VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP--GPSGKDGPKGARGDSGP 937

Query: 171  ECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHR 229
                  P   GP G  G   E+        + A GPP P G++G  RG V L G   +  
Sbjct: 938  PGRAGEPGLQGPAGPPG---EKGEPGDDGPSGAEGPPGPQGLAGQ-RGIVGLPGQRGERG 993

Query: 230  WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
            +P    PS   G+ G            APG +G  GPPG   P    GP
Sbjct: 994  FPGLPGPSGEPGKQG------------APGASGDRGPPGPVGPPGLTGP 1030



 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 97/328 (29%), Positives = 120/328 (36%), Gaps = 56/328 (17%)

Query: 6   GPRRLAGLQRTPA---AYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-------- 53
           GPR   G   +P    A  N     I G     GA G AG+  +  PRG           
Sbjct: 390 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 449

Query: 54  -----AGAPGSPLYRVSAPPPAPPPPP-PPGGPSRS-ERPRAGLR--PGAFVSPGPLGRR 104
                 G PG   ++    P   P P  P G P  + E  + G R  PG     GP G R
Sbjct: 450 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER 509

Query: 105 AS-----------CSGRAGSAGRLRCSAAALSAAQRGGPARAQVP--PALR--TFSPGPA 149
            +            +G  G+ G    S  A      G P R   P  P  R  T  PG A
Sbjct: 510 GAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 569

Query: 150 SPP-RASPGGRPGSEAR-GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG-P 206
            P  +  P G PG + R G  G + AR  P   G PG  G   E  +  +      +G P
Sbjct: 570 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE------KGLP 623

Query: 207 PFPGISGMTR--GPVVLSGVNRQHRWPPG-ASPSRSLGEAGGERPARALRRPRAPGRAGG 263
             PG+ G+    G    +G       PPG A P+   GE G   P+     P  PG  G 
Sbjct: 624 GAPGLRGLPGKDGETGAAG-------PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE 676

Query: 264 GGPPGG-GIPACSIGPGLARLAALGGLP 290
           GG PG  G+P  +  PGL       G P
Sbjct: 677 GGKPGDQGVPGEAGAPGLVGPRGERGFP 704



 Score = 71.6 bits (174), Expect = 8e-13
 Identities = 81/295 (27%), Positives = 103/295 (34%), Gaps = 53/295 (17%)

Query: 17  PAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-------AGAPGSPLYRVSAPPP 69
           P       A  ++G  DE+ A GA   + + P G +        AGAPG   ++ +   P
Sbjct: 172 PPGLGGNFAAQMAGGFDEK-AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEP 230

Query: 70  APP----------PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--SCSGRAGSAGRL 117
             P          PP PPG P          + G    PGP G R      G  G  G  
Sbjct: 231 GEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHR 290

Query: 118 RCSAAALSAAQRGGPA-RAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRV 176
                  +  + G P  + +        SPGP  P R  PG R  +   G +GA      
Sbjct: 291 GYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP-RGLPGERGRTGPAGAAGARGNDGQ 349

Query: 177 PLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASP 236
           P   GPPG  G              PA GP FPG  G  +G                A P
Sbjct: 350 PGPAGPPGPVG--------------PAGGPGFPGAPG-AKGE---------------AGP 379

Query: 237 SRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 290
           + + G  G + P      P +PG AG  G PG  GIP      G   +A   G P
Sbjct: 380 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 434



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 82/276 (29%), Positives = 96/276 (34%), Gaps = 37/276 (13%)

Query: 30  GRADEEGAAG----AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRS-- 83
           G A E+G  G     G K    PRG    G PG+P       PP PP PP  GG   +  
Sbjct: 126 GPAGEQGPRGDRGDKGEKGAPGPRGR--DGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQM 183

Query: 84  ----ERPRAGLRPGAFVSP-GPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPA 133
               +    G + G    P GP+G R    G AG+ G            + G     GP 
Sbjct: 184 AGGFDEKAGGAQLGVMQGPMGPMGPRGP-PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR 242

Query: 134 RAQVPPALRTFSPGPASPPRASPGGRPGSE-ARGRSGAECARRVPLHHGPPGASGVGSER 192
               PP           P +A   G PG + ARG  G      V  H G PG  G   E 
Sbjct: 243 GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA 302

Query: 193 DR---KFQLHQTPARGPP-------FPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 242
                K +       G P        PG  G T GP   +G       P  A P   +G 
Sbjct: 303 GAPGVKGESGSPGENGSPGPMGPRGLPGERGRT-GPAGAAGARGNDGQPGPAGPPGPVGP 361

Query: 243 AGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
           AGG         P APG  G  GP G   P  + GP
Sbjct: 362 AGGP------GFPGAPGAKGEAGPTGARGPEGAQGP 391



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 98/326 (30%), Positives = 116/326 (35%), Gaps = 70/326 (21%)

Query: 6   GPRRLAGLQRTPAAYAN-EAALAISGRADEEGAAGAGSKLWRR----PRGAVS-AGAPGS 59
           GP+   G +R P+  A  + A    GR  E G  GA     R     P+G V  +GAPG 
Sbjct: 525 GPKGAPG-ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 583

Query: 60  PLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGR--- 116
                       P PP P G        A  +PG    PGP G      G+AG  G    
Sbjct: 584 D---------GRPGPPGPQG--------ARGQPGVMGFPGPKGANGE-PGKAGEKGLPGA 625

Query: 117 -----LRCSAAALSAAQRGGPARA------QVPPALRTFS--PGPASPPRASPGGRPGSE 163
                L        AA   GPA        Q  P    F   PGP  PP    GG+PG +
Sbjct: 626 PGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPP--GEGGKPGDQ 683

Query: 164 -------ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT- 215
                  A G  G    R  P   G PGA G+   R     L  TP    P  G SG   
Sbjct: 684 GVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG----LPGTPGTDGP-KGASGPAG 738

Query: 216 ----RGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
               +GP  L G+  +      A P    G+ G + P  A  +    G  G  GPPG   
Sbjct: 739 PPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG--- 795

Query: 272 PACSIG-------PGLARLAALGGLP 290
           PA + G       PG A  A   G P
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAP 821



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 82/282 (29%), Positives = 101/282 (35%), Gaps = 51/282 (18%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP+ LAG             + + G+  E G  G        P  +   G  G+P     
Sbjct: 972  GPQGLAG---------QRGIVGLPGQRGERGFPGL-------PGPSGEPGKQGAPGASGD 1015

Query: 66   APPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRC 119
              PP P  PP    P G P R   P A   PG   + G  G R      G  G+ G    
Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGS 1075

Query: 120  SAAALSAAQRG--GPARAQVP-----PALRTFSPGPASPPRASPG--GRPGSEA-RGRSG 169
               A    ++G  G A AQ P     PA      GP  P R   G  G PG    +G  G
Sbjct: 1076 PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGP-RGDKGEAGEPGERGLKGHRG 1134

Query: 170  AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
                + +P   GPPG SG   ++        +  RGPP         GPV  SG +  + 
Sbjct: 1135 FTGLQGLP---GPPGPSG---DQGASGPAGPSGPRGPP---------GPVGPSGKDGANG 1179

Query: 230  WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
             P    P    G +G   PA     P  PG     GPPG GI
Sbjct: 1180 IPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP---GPPGPGI 1218



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 89/304 (29%), Positives = 107/304 (35%), Gaps = 66/304 (21%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP   AG    P A     A    G A ++G AGA       P+G   A  P  P   V+
Sbjct: 828  GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG-----PQGPSGAPGPQGPT-GVT 881

Query: 66   APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
             P  A     PPG             PG+  +PGP G     SG+ G  G         +
Sbjct: 882  GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGP-SGKDGPKG---------A 931

Query: 126  AAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGA 185
                G P RA  P        GPA PP     G PG +  G SGAE         GPPG 
Sbjct: 932  RGDSGPPGRAGEPGL-----QGPAGPPGEK--GEPGDD--GPSGAE---------GPPGP 973

Query: 186  SGVGSER----------DRKFQLHQTPA--------------RGPPFP-GISGMTRGPVV 220
             G+  +R          +R F     P+              RGPP P G  G+T GP  
Sbjct: 974  QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT-GPAG 1032

Query: 221  LSGVNRQHR--WPPGASPSRSL----GEAGGERPARALRRPRAPGRAGGGGPPGGGIPAC 274
              G         PPG   +  +    GE G      A   P +PG AG  G  G    A 
Sbjct: 1033 EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1092

Query: 275  SIGP 278
            + GP
Sbjct: 1093 AQGP 1096



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 89/307 (28%), Positives = 111/307 (36%), Gaps = 64/307 (20%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVSA------- 54
           GP    GL   P            G   E GA G     G + +   RG+  A       
Sbjct: 660 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR 719

Query: 55  GAPGSPLYRVSAPPPAPPPPPPPG--GPSR-----SERPRAGLRP-----GAFVSPGPLG 102
           G PG+P      P  A  P  PPG  GP        ER  AG+       G     GP G
Sbjct: 720 GLPGTP--GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG 777

Query: 103 RRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP--RASPGGRP 160
                 GR G  G +     A +  ++G     +V P      PGPA     R +PG R 
Sbjct: 778 APGKDGGR-GLTGPIGPPGPAGANGEKG-----EVGP------PGPAGSAGARGAPGERG 825

Query: 161 GSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMT--RG 217
            +   G +G           GPPGA G    +  + +  Q    G P P G SG    +G
Sbjct: 826 ETGPPGPAGFA---------GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQG 876

Query: 218 PVVLSGVN--RQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACS 275
           P  ++G    R  + PPGA+     G AG   P         PG  G  GPPG   P+  
Sbjct: 877 PTGVTGPKGARGAQGPPGATGFP--GAAGRVGP---------PGSNGNPGPPGPPGPSGK 925

Query: 276 IGPGLAR 282
            GP  AR
Sbjct: 926 DGPKGAR 932



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 73/257 (28%), Positives = 88/257 (34%), Gaps = 56/257 (21%)

Query: 71  PPPPPPPGGPSRSERPRAGL----------------RPGAFVSPGPLGRRASCSGRAGSA 114
           P  PP P GP+  + PR                    PG   +PGP G      G  G  
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGP-PGPPGLG 176

Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSP-GPASPPRASPGGRPGSEA-RGRSG--A 170
           G      A     + GG   AQ+        P GP  PP   P G PG +  +G  G   
Sbjct: 177 GNFAAQMAGGFDEKAGG---AQLGVMQGPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPG 231

Query: 171 ECARRVPL-HHGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-------- 214
           E     P+   GPPG  G   +     +  +   RGPP       FPG  G+        
Sbjct: 232 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 291

Query: 215 ------TRGPVVLSGVNRQHRWP-----PGASPSRSL-GEAGGERPARALRRPRAPGRAG 262
                  +G     GV  +   P     PG    R L GE G   PA A       G+ G
Sbjct: 292 YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 351

Query: 263 GGGPPGGGIPACSIGPG 279
             GPPG   PA   GPG
Sbjct: 352 PAGPPGPVGPAG--GPG 366



 Score = 30.8 bits (68), Expect = 1.6
 Identities = 33/100 (33%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSA-GAPG-----S 59
            G R   GLQ  P           SG A   G  G    +   P G   A G PG      
Sbjct: 1131 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVG--PSGKDGANGIPGPIGPPG 1188

Query: 60   PLYRV-----SAPP--PAPPPPPPPGGPSRSERPRAGLRP 92
            P  R      + PP  P PP PP P GP       AGL P
Sbjct: 1189 PRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGP 1228


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 92/289 (31%), Positives = 117/289 (40%), Gaps = 39/289 (13%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRG-AVSAGAPGSPLYR 63
           G R   G +    A   +    ++G     G AGA G K    P G A SAGA G+P  R
Sbjct: 696 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 755

Query: 64  VSAPPPAPP----PPPPPGGP-SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLR 118
               PP P     PP   G P ++ E+  AG + G   +PGP G     SG  G  G   
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK-GDAGAPGPQGP----SGAPGPQGPTG 810

Query: 119 CSAAALSAAQRGGP-------ARAQVPPALRTFSPGPASPPRASPGGRPGSE-ARGRSGA 170
            +    +   +G P       A  +V P     +PGP  PP   P G+ G + ARG SG 
Sbjct: 811 VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP--GPSGKDGPKGARGDSGP 868

Query: 171 ECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHR 229
                 P   GP G  G   E+        + A GPP P G++G  RG V L G   +  
Sbjct: 869 PGRAGEPGLQGPAGPPG---EKGEPGDDGPSGAEGPPGPQGLAGQ-RGIVGLPGQRGERG 924

Query: 230 WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
           +P    PS   G+ G            APG +G  GPPG   P    GP
Sbjct: 925 FPGLPGPSGEPGKQG------------APGASGDRGPPGPVGPPGLTGP 961



 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 97/328 (29%), Positives = 120/328 (36%), Gaps = 56/328 (17%)

Query: 6   GPRRLAGLQRTPA---AYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-------- 53
           GPR   G   +P    A  N     I G     GA G AG+  +  PRG           
Sbjct: 321 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 380

Query: 54  -----AGAPGSPLYRVSAPPPAPPPPP-PPGGPSRS-ERPRAGLR--PGAFVSPGPLGRR 104
                 G PG   ++    P   P P  P G P  + E  + G R  PG     GP G R
Sbjct: 381 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER 440

Query: 105 AS-----------CSGRAGSAGRLRCSAAALSAAQRGGPARAQVP--PALR--TFSPGPA 149
            +            +G  G+ G    S  A      G P R   P  P  R  T  PG A
Sbjct: 441 GAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 500

Query: 150 SPP-RASPGGRPGSEAR-GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG-P 206
            P  +  P G PG + R G  G + AR  P   G PG  G   E  +  +      +G P
Sbjct: 501 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE------KGLP 554

Query: 207 PFPGISGMTR--GPVVLSGVNRQHRWPPG-ASPSRSLGEAGGERPARALRRPRAPGRAGG 263
             PG+ G+    G    +G       PPG A P+   GE G   P+     P  PG  G 
Sbjct: 555 GAPGLRGLPGKDGETGAAG-------PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE 607

Query: 264 GGPPGG-GIPACSIGPGLARLAALGGLP 290
           GG PG  G+P  +  PGL       G P
Sbjct: 608 GGKPGDQGVPGEAGAPGLVGPRGERGFP 635



 Score = 71.6 bits (174), Expect = 8e-13
 Identities = 81/295 (27%), Positives = 103/295 (34%), Gaps = 53/295 (17%)

Query: 17  PAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-------AGAPGSPLYRVSAPPP 69
           P       A  ++G  DE+ A GA   + + P G +        AGAPG   ++ +   P
Sbjct: 103 PPGLGGNFAAQMAGGFDEK-AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEP 161

Query: 70  APP----------PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--SCSGRAGSAGRL 117
             P          PP PPG P          + G    PGP G R      G  G  G  
Sbjct: 162 GEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHR 221

Query: 118 RCSAAALSAAQRGGPA-RAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRV 176
                  +  + G P  + +        SPGP  P R  PG R  +   G +GA      
Sbjct: 222 GYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP-RGLPGERGRTGPAGAAGARGNDGQ 280

Query: 177 PLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASP 236
           P   GPPG  G              PA GP FPG  G  +G                A P
Sbjct: 281 PGPAGPPGPVG--------------PAGGPGFPGAPG-AKGE---------------AGP 310

Query: 237 SRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 290
           + + G  G + P      P +PG AG  G PG  GIP      G   +A   G P
Sbjct: 311 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 365



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 82/276 (29%), Positives = 96/276 (34%), Gaps = 37/276 (13%)

Query: 30  GRADEEGAAG----AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRS-- 83
           G A E+G  G     G K    PRG    G PG+P       PP PP PP  GG   +  
Sbjct: 57  GPAGEQGPRGDRGDKGEKGAPGPRGR--DGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQM 114

Query: 84  ----ERPRAGLRPGAFVSP-GPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPA 133
               +    G + G    P GP+G R    G AG+ G            + G     GP 
Sbjct: 115 AGGFDEKAGGAQLGVMQGPMGPMGPRGP-PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR 173

Query: 134 RAQVPPALRTFSPGPASPPRASPGGRPGSE-ARGRSGAECARRVPLHHGPPGASGVGSER 192
               PP           P +A   G PG + ARG  G      V  H G PG  G   E 
Sbjct: 174 GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA 233

Query: 193 DR---KFQLHQTPARGPP-------FPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 242
                K +       G P        PG  G T GP   +G       P  A P   +G 
Sbjct: 234 GAPGVKGESGSPGENGSPGPMGPRGLPGERGRT-GPAGAAGARGNDGQPGPAGPPGPVGP 292

Query: 243 AGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
           AGG         P APG  G  GP G   P  + GP
Sbjct: 293 AGGP------GFPGAPGAKGEAGPTGARGPEGAQGP 322



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 98/326 (30%), Positives = 116/326 (35%), Gaps = 70/326 (21%)

Query: 6   GPRRLAGLQRTPAAYAN-EAALAISGRADEEGAAGAGSKLWRR----PRGAVS-AGAPGS 59
           GP+   G +R P+  A  + A    GR  E G  GA     R     P+G V  +GAPG 
Sbjct: 456 GPKGAPG-ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 514

Query: 60  PLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGR--- 116
                       P PP P G        A  +PG    PGP G      G+AG  G    
Sbjct: 515 D---------GRPGPPGPQG--------ARGQPGVMGFPGPKGANGE-PGKAGEKGLPGA 556

Query: 117 -----LRCSAAALSAAQRGGPARA------QVPPALRTFS--PGPASPPRASPGGRPGSE 163
                L        AA   GPA        Q  P    F   PGP  PP    GG+PG +
Sbjct: 557 PGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPP--GEGGKPGDQ 614

Query: 164 -------ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT- 215
                  A G  G    R  P   G PGA G+   R     L  TP    P  G SG   
Sbjct: 615 GVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG----LPGTPGTDGP-KGASGPAG 669

Query: 216 ----RGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
               +GP  L G+  +      A P    G+ G + P  A  +    G  G  GPPG   
Sbjct: 670 PPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG--- 726

Query: 272 PACSIG-------PGLARLAALGGLP 290
           PA + G       PG A  A   G P
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAP 752



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 82/282 (29%), Positives = 101/282 (35%), Gaps = 51/282 (18%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP+ LAG             + + G+  E G  G        P  +   G  G+P     
Sbjct: 903  GPQGLAG---------QRGIVGLPGQRGERGFPGL-------PGPSGEPGKQGAPGASGD 946

Query: 66   APPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRC 119
              PP P  PP    P G P R   P A   PG   + G  G R      G  G+ G    
Sbjct: 947  RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGS 1006

Query: 120  SAAALSAAQRG--GPARAQVP-----PALRTFSPGPASPPRASPG--GRPGSEA-RGRSG 169
               A    ++G  G A AQ P     PA      GP  P R   G  G PG    +G  G
Sbjct: 1007 PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGP-RGDKGEAGEPGERGLKGHRG 1065

Query: 170  AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
                + +P   GPPG SG   ++        +  RGPP         GPV  SG +  + 
Sbjct: 1066 FTGLQGLP---GPPGPSG---DQGASGPAGPSGPRGPP---------GPVGPSGKDGANG 1110

Query: 230  WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
             P    P    G +G   PA     P  PG     GPPG GI
Sbjct: 1111 IPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP---GPPGPGI 1149



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 89/304 (29%), Positives = 107/304 (35%), Gaps = 66/304 (21%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP   AG    P A     A    G A ++G AGA       P+G   A  P  P   V+
Sbjct: 759  GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG-----PQGPSGAPGPQGPT-GVT 812

Query: 66   APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
             P  A     PPG             PG+  +PGP G     SG+ G  G         +
Sbjct: 813  GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGP-SGKDGPKG---------A 862

Query: 126  AAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGA 185
                G P RA  P        GPA PP     G PG +  G SGAE         GPPG 
Sbjct: 863  RGDSGPPGRAGEPGL-----QGPAGPPGEK--GEPGDD--GPSGAE---------GPPGP 904

Query: 186  SGVGSER----------DRKFQLHQTPA--------------RGPPFP-GISGMTRGPVV 220
             G+  +R          +R F     P+              RGPP P G  G+T GP  
Sbjct: 905  QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT-GPAG 963

Query: 221  LSGVNRQHR--WPPGASPSRSL----GEAGGERPARALRRPRAPGRAGGGGPPGGGIPAC 274
              G         PPG   +  +    GE G      A   P +PG AG  G  G    A 
Sbjct: 964  EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1023

Query: 275  SIGP 278
            + GP
Sbjct: 1024 AQGP 1027



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 89/307 (28%), Positives = 111/307 (36%), Gaps = 64/307 (20%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVSA------- 54
           GP    GL   P            G   E GA G     G + +   RG+  A       
Sbjct: 591 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR 650

Query: 55  GAPGSPLYRVSAPPPAPPPPPPPG--GPSR-----SERPRAGLRP-----GAFVSPGPLG 102
           G PG+P      P  A  P  PPG  GP        ER  AG+       G     GP G
Sbjct: 651 GLPGTP--GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG 708

Query: 103 RRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP--RASPGGRP 160
                 GR G  G +     A +  ++G     +V P      PGPA     R +PG R 
Sbjct: 709 APGKDGGR-GLTGPIGPPGPAGANGEKG-----EVGP------PGPAGSAGARGAPGERG 756

Query: 161 GSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMT--RG 217
            +   G +G           GPPGA G    +  + +  Q    G P P G SG    +G
Sbjct: 757 ETGPPGPAGFA---------GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQG 807

Query: 218 PVVLSGVN--RQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACS 275
           P  ++G    R  + PPGA+     G AG   P         PG  G  GPPG   P+  
Sbjct: 808 PTGVTGPKGARGAQGPPGATGFP--GAAGRVGP---------PGSNGNPGPPGPPGPSGK 856

Query: 276 IGPGLAR 282
            GP  AR
Sbjct: 857 DGPKGAR 863



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 73/257 (28%), Positives = 88/257 (34%), Gaps = 56/257 (21%)

Query: 71  PPPPPPPGGPSRSERPRAGL----------------RPGAFVSPGPLGRRASCSGRAGSA 114
           P  PP P GP+  + PR                    PG   +PGP G      G  G  
Sbjct: 49  PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGP-PGPPGLG 107

Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSP-GPASPPRASPGGRPGSEA-RGRSG--A 170
           G      A     + GG   AQ+        P GP  PP   P G PG +  +G  G   
Sbjct: 108 GNFAAQMAGGFDEKAGG---AQLGVMQGPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPG 162

Query: 171 ECARRVPL-HHGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-------- 214
           E     P+   GPPG  G   +     +  +   RGPP       FPG  G+        
Sbjct: 163 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 222

Query: 215 ------TRGPVVLSGVNRQHRWP-----PGASPSRSL-GEAGGERPARALRRPRAPGRAG 262
                  +G     GV  +   P     PG    R L GE G   PA A       G+ G
Sbjct: 223 YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 282

Query: 263 GGGPPGGGIPACSIGPG 279
             GPPG   PA   GPG
Sbjct: 283 PAGPPGPVGPAG--GPG 297



 Score = 30.8 bits (68), Expect = 1.6
 Identities = 33/100 (33%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSA-GAPG-----S 59
            G R   GLQ  P           SG A   G  G    +   P G   A G PG      
Sbjct: 1062 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVG--PSGKDGANGIPGPIGPPG 1119

Query: 60   PLYRV-----SAPP--PAPPPPPPPGGPSRSERPRAGLRP 92
            P  R      + PP  P PP PP P GP       AGL P
Sbjct: 1120 PRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGP 1159


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 98/317 (30%), Positives = 120/317 (37%), Gaps = 37/317 (11%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
           GPR   G Q              +G A   GA G  G+K      G   AGAPG P  R 
Sbjct: 359 GPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGI--AGAPGFPGARG 416

Query: 65  SAPPPAP-PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRR-----ASCSGRAGSAGRLR 118
            + P  P  PP P G       P +    GA   PGP+G +     A   G+ G+ G   
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG 476

Query: 119 CSAAALSAAQRGGPARAQVP----------PALRTFSPGPASPPRASPG--GRPGSE--- 163
            +       +RGGP     P          PA    SPGPA  P+ SPG  GRPG     
Sbjct: 477 PTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAG-PKGSPGEAGRPGEAGLP 535

Query: 164 -ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP----FPGISGMTRGP 218
            A+G +G+  +       GPPG +G   +  R        ARG      FPG  G    P
Sbjct: 536 GAKGLTGSPGSPGPDGKTGPPGPAG---QDGRPGPPGPPGARGQAGVMGFPGPKGAAGEP 592

Query: 219 VVLSGVNRQHRWPPGA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSI 276
                  R    PPGA  P+   GEAG + P          G  G  G PG  G+P  + 
Sbjct: 593 G--KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAG 650

Query: 277 GPGLARLAALGGLPSIL 293
            PG A      G+P  L
Sbjct: 651 PPGEAGKPGEQGVPGDL 667



 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 95/293 (32%), Positives = 114/293 (38%), Gaps = 29/293 (9%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRG-AVSAGAPGSPLYR 63
            G R  AG +    +   +    ++G     G AGA G K    P G A   GA G+P  R
Sbjct: 743  GDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDR 802

Query: 64   VSAPPPAPP----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRC 119
                PP P     PP   G P     P      G    PGP G  A   G  G+ G    
Sbjct: 803  GEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP-AGPPGPIGNVGAPGA 861

Query: 120  SAAALSAAQRGGP----ARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECAR 174
              A  SA   G      A  +V P   + + GP  PP   P G+ G +  RG +G   A 
Sbjct: 862  KGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP--GPAGKEGGKGPRGETGP--AG 917

Query: 175  RVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPG 233
            R P   GPPG  G   E+          A G P P GI+G  RG V L G   +  +P  
Sbjct: 918  R-PGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ-RGVVGLPGQRGERGFPGL 975

Query: 234  ASPSRSLGEAGGERPARAL--RRPRAP-GRAGGGGPPG----GGIPACSIGPG 279
              PS   GE G + P+ A   R P  P G  G  GPPG     G P     PG
Sbjct: 976  PGPS---GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPG 1025



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 98/316 (31%), Positives = 116/316 (36%), Gaps = 61/316 (19%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP+  AG + +P     + +   +GR  E G  GA              G+PGSP     
Sbjct: 503 GPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL----------TGSPGSPGPDGK 552

Query: 66  APPPAPPP----PPPPGGPSRSERPRAGLR-----PGAFVSPGPLGRRA--------SCS 108
             PP P      P PPG P    R +AG+       GA   PG  G R           +
Sbjct: 553 TGPPGPAGQDGRPGPPGPPGA--RGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPA 610

Query: 109 GRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPP--------RASPG- 157
           G+ G AG       A  A +RG  GPA +     L    PGPA PP        +  PG 
Sbjct: 611 GKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGL----PGPAGPPGEAGKPGEQGVPGD 666

Query: 158 -GRPG-SEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP----FPGI 211
            G PG S ARG  G    R V    GP G  G               A G P     PG+
Sbjct: 667 LGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGL 726

Query: 212 SGMT--RGPVVLSGV--NRQHRWPPGASPSRSLGEAGGERPARALRRPRAP-GRAGGGGP 266
            GM   RG   L G   +R    P GA  S       G+   R L  P  P G AG  G 
Sbjct: 727 QGMPGERGAAGLPGPKGDRGDAGPKGADGSP------GKDGVRGLTGPIGPPGPAGAPGD 780

Query: 267 PGGGIPACSIGPGLAR 282
            G   P+   GP  AR
Sbjct: 781 KGESGPSGPAGPTGAR 796



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 80/258 (31%), Positives = 89/258 (34%), Gaps = 34/258 (13%)

Query: 50  GAVSAGAPGSPL--YRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASC 107
           G +S   P  P     +  PP AP P    G P     P A    G    PGP G+    
Sbjct: 173 GGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGD- 231

Query: 108 SGRAGSAGRLRCSAAALSAAQRGGPARAQVP--PALRTFS-----PGPASPPRASPGGRP 160
            G AG  GR            RG P  A +P     R FS      G A P  A P G P
Sbjct: 232 DGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP--AGPKGEP 289

Query: 161 GSEAR-GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP----------FP 209
           GS    G  G    R +P   G PGA G    R        T A GPP          FP
Sbjct: 290 GSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGND---GATGAAGPPGPTGPAGPPGFP 346

Query: 210 GISGMT--------RGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRA 261
           G  G          RG     GV  +   P  A  +   G  G +    A     APG A
Sbjct: 347 GAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA 406

Query: 262 GGGGPPGGGIPACSIGPG 279
           G  G PG   P+   GPG
Sbjct: 407 GAPGFPGARGPSGPQGPG 424



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 103/365 (28%), Positives = 118/365 (32%), Gaps = 91/365 (24%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAV-SAGAPGSPLYR 63
            GP   AG    P A     A    G A  +G AG  G      P G + + GAPG+   R
Sbjct: 806  GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865

Query: 64   VSAPPPA---------------------PPPPPPPGGPSRSERPRAGLRP-------GAF 95
             SA PP                      PP PP P G    + PR    P       G  
Sbjct: 866  GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPP 925

Query: 96   VSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRAS 155
              PGP G + S  G  G AG          A QRG        P  R     P  P    
Sbjct: 926  GPPGPAGEKGS-PGADGPAGAPGTPGPQGIAGQRGVVGL----PGQRGERGFPGLP---G 977

Query: 156  PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDR------------------KFQ 197
            P G PG +  G SGA   R  P   GPPG +G   E  R                  K  
Sbjct: 978  PSGEPGKQ--GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGD 1035

Query: 198  LHQTPARGPP-FPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPA------- 249
              +T   GPP  PG  G   GPV  +G +        A P+  +G  G   PA       
Sbjct: 1036 RGETGPAGPPGAPGAPGAP-GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094

Query: 250  ----------RALRR----------PRAPGRAGGGGPPGGGIPACSIGP----GLARLAA 285
                      R ++           P  PG  G  GP G   PA   GP    G      
Sbjct: 1095 DKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDG 1154

Query: 286  LGGLP 290
            L GLP
Sbjct: 1155 LNGLP 1159



 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 95/329 (28%), Positives = 118/329 (35%), Gaps = 77/329 (23%)

Query: 12  GLQRTPAAYANEAALAISGRADEEGAAG----------AGSKLWRRPRGAVSAGAPGSPL 61
           GL  +P +   +      G A ++G  G          AG   +  P+GA  AG PG   
Sbjct: 539 GLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGA--AGEPGKAG 596

Query: 62  YR-VSAPPPAPPP-----------PPPPGGPS--RSERPRAGLRPGAFVSPGPLGR--RA 105
            R V  PP A  P           PP P GP+  R E+  AG  PG    PGP G    A
Sbjct: 597 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG-SPGFQGLPGPAGPPGEA 655

Query: 106 SCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSE-A 164
              G  G  G L     + +  +RG P    V        PGPA P  A+  G PG++ A
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGP-----PGPAGPRGAN--GAPGNDGA 708

Query: 165 RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP----------GISGM 214
           +G +GA  A   P   G PG  G+  ER           RG   P          G+ G+
Sbjct: 709 KGDAGAPGA---PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGL 765

Query: 215 T-----------------------RGPVVLSGV--NRQHRWPPGASPSRSLGEAGGERPA 249
           T                        GP    G   +R    PPG  P+   G  G +   
Sbjct: 766 TGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG--PAGFAGPPGADGQP 823

Query: 250 RALRRPRAPGRAGGGGPPGGGIPACSIGP 278
            A   P   G  G  GPPG   PA   GP
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPAGPAGPPGP 852



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 91/295 (30%), Positives = 110/295 (37%), Gaps = 55/295 (18%)

Query: 29   SGRADEEGAAGA----------GSKLWRRPRGAV----SAGAPGSPLYRVSAPPPAPPPP 74
            SG A   GA GA          G   +  P GA     + G PG    +  A PP P  P
Sbjct: 787  SGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP 846

Query: 75   PPPGGP--------SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSA 126
              P GP        ++  R  AG  PGA   PG  GR     G  G +G          A
Sbjct: 847  AGPPGPIGNVGAPGAKGARGSAG-PPGATGFPGAAGR----VGPPGPSGNAGPPGPPGPA 901

Query: 127  AQRGGPA-RAQVPPALRTFSPGPASPP-----RASPG-----GRPGSEA-RGRSGAECAR 174
             + GG   R +  PA R    GP  PP     + SPG     G PG+   +G +G     
Sbjct: 902  GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV 961

Query: 175  RVPLHHGP---PGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRW 230
             +P   G    PG  G   E  ++     +  RGPP P G  G+  GP   SG       
Sbjct: 962  GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLA-GPPGESG----REG 1016

Query: 231  PPGA--SPSR-----SLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
             PGA  SP R     + G+ G   PA     P APG  G  GP G        GP
Sbjct: 1017 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 81/286 (28%), Positives = 96/286 (33%), Gaps = 52/286 (18%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP    G             + + G+  E G  G        P  +   G  G       
Sbjct: 941  GPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGL-------PGPSGEPGKQGPSGASGE 993

Query: 66   APPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSA 121
              PP P  PP    PPG   R   P A   PG   SPG  G R   +G AG  G    + 
Sbjct: 994  RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE-TGPAGPPG----AP 1048

Query: 122  AALSAAQRGGPA-----RAQVPPALRTFSPGPASPPRA-SPGGRPGSEA-RGRSGAECAR 174
             A  A    GPA     R +  PA      GP  P  A  P G  G    +G +G +  R
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETGPA---GPAGPVGPVGARGPAGPQGPRGDKGETGEQGDR 1105

Query: 175  RVPLH------HGPPGASGVGSERDRKFQLHQTPARGPP----FPGISGMTRGPVVLSGV 224
             +  H       GPPG  G   E+           RGPP     PG  G+   P  +   
Sbjct: 1106 GIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIG-- 1163

Query: 225  NRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGG 270
                  PPG  P    G+AG   P      P  PG  G  GPP  G
Sbjct: 1164 ------PPG--PRGRTGDAGPVGP------PGPPGPPGPPGPPSAG 1195



 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 86/311 (27%), Positives = 93/311 (29%), Gaps = 84/311 (27%)

Query: 46  RRPRGAVSA----GAPGSPLYRVSAPPPAPPPPP-------------------------- 75
           R PRG        G PG P       PP PP PP                          
Sbjct: 120 RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPG 179

Query: 76  ------------PPGGPSRSERPRAGLRPGAFVSPGPLGRRA--------SCSGRAGSAG 115
                       PPG P           PG   + GP+G R            G AG  G
Sbjct: 180 PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPG 239

Query: 116 RLRCSAAALSAAQRGGPARAQVP--PALRTFS-----PGPASPPRASPGGRPGSEA-RGR 167
           R            RG P  A +P     R FS      G A P  A P G PGS    G 
Sbjct: 240 RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP--AGPKGEPGSPGENGA 297

Query: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
            G    R +P   G PGA G    R        T A GPP P       GP    G    
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGND---GATGAAGPPGP------TGPAGPPGF--- 345

Query: 228 HRWPPGASPSRS----LGEAGGERPARALRRPRAPGRAGGGGPPGG----GIPACSIGPG 279
               PGA  ++      G  G E P      P  PG AG  GP G     G P      G
Sbjct: 346 ----PGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANG 401

Query: 280 LARLAALGGLP 290
              +A   G P
Sbjct: 402 APGIAGAPGFP 412


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 91/283 (32%), Positives = 112/283 (39%), Gaps = 33/283 (11%)

Query: 19  AYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRV------SAPPPAPP 72
           +Y  ++ +A+ G A   G AG        P  +   G+PGSP Y+        A P  PP
Sbjct: 157 SYDVKSGVAVGGLAGYPGPAGPPGPPGP-PGTSGHPGSPGSPGYQGPPGEPGQAGPSGPP 215

Query: 73  PPPPPGGPSR-----SERPRAGLRPGAFVSPGPLGRR--ASCSGRAGSAGRLRCSAAALS 125
            PP   GPS       E  R G RPG    PGP G +  A   G  G  G          
Sbjct: 216 GPPGAIGPSGPAGKDGESGRPG-RPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGE 274

Query: 126 AAQRGGPA-RAQVPPALRTFSPGPASPPRASPG--GRPG----SEARGRSGAECARRVPL 178
             + G P  + +        +PGP  P R +PG  GRPG    + ARG  GA  +   P 
Sbjct: 275 KGETGAPGLKGENGLPGENGAPGPMGP-RGAPGERGRPGLPGAAGARGNDGARGSDGQPG 333

Query: 179 HHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSR 238
             GPPG +G       K ++   PA  P   G  G    P        Q   PPG  P  
Sbjct: 334 PPGPPGTAGFPGSPGAKGEV--GPAGSPGSNGAPGQRGEPGPQGHAGAQ--GPPG--PPG 387

Query: 239 SLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PGL 280
             G  GG+        P APG  G  GPPG   PA + G PGL
Sbjct: 388 INGSPGGKGEMGPAGIPGAPGLMGARGPPG---PAGANGAPGL 427



 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 81/294 (27%), Positives = 97/294 (32%), Gaps = 65/294 (22%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVSAGAPGSPL 61
           G R  AG+   P A   +      G     G  GA    G+  +R P G         P 
Sbjct: 447 GERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPA 506

Query: 62  YRVSAPPPAPPPPPP--------PGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGS 113
               AP PA P            PGGP     P +   PG+   PGP G +   SGR G 
Sbjct: 507 GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGE-SGRPGP 565

Query: 114 AGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSE----ARGR 167
                                           PGP S PR  PG  G PG +    A G+
Sbjct: 566 --------------------------------PGP-SGPRGQPGVMGFPGPKGNDGAPGK 592

Query: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
           +G       P   GPPG +G            +T  +GPP P   G  +G     G    
Sbjct: 593 NGERGGPGGPGPQGPPGKNG------------ETGPQGPPGPTGPGGDKGDTGPPGPQGL 640

Query: 228 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGL 280
              P    P    G+ G   P      P APG  G  G PG  G P  +  PGL
Sbjct: 641 QGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGL 694



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 109/365 (29%), Positives = 127/365 (34%), Gaps = 95/365 (26%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPG------- 58
           GP+ L GL  T             G   + GA GA       P G   AGAPG       
Sbjct: 636 GPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA-------PGGKGDAGAPGERGPPGL 688

Query: 59  --SPLYRVSAPPPAPP-------PPPPPGG---PSRSERP--RAGLR------------- 91
             +P  R  A PP P        PP PPG    P     P  R GL              
Sbjct: 689 AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGG 748

Query: 92  PGAFVSPGPLGRRASC--------SGRAGSAGRLRCSAAALSAAQRGGPA-RAQVPPALR 142
           PGA   PG  G R           +G+ G  G          A  RG P  R +  P   
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP--- 805

Query: 143 TFSPGPASPPRASPG--GRPGSEA-RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLH 199
              PGPA  P A PG  G PG +  RG  G +     P   GPPG SG       +    
Sbjct: 806 ---PGPAGFPGA-PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG 861

Query: 200 QTPARGPP----FPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRP 255
           +  + G P    FPG  G+  GP   +G    +  PPG  PS S G+ G   PA     P
Sbjct: 862 ERGSPGGPGAAGFPGARGLP-GPPGSNG----NPGPPG--PSGSPGKDGPPGPAGNTGAP 914

Query: 256 RAPGRAG---------------GGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLP 300
            +PG +G                 GPPG   P    G   AR   L G P        +P
Sbjct: 915 GSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGAR--GLAGPPG-------MP 965

Query: 301 SPRSS 305
            PR S
Sbjct: 966 GPRGS 970



 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 86/297 (28%), Positives = 108/297 (36%), Gaps = 36/297 (12%)

Query: 12   GLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-------AGAPGSPLYR 63
            G + +P A     A    G A   GA G AG      PRG+         +G PG+    
Sbjct: 930  GEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLS 989

Query: 64   VSAPPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRL 117
                PP P   P      G P R   P +   PG   SPG  G R      G  G+ G  
Sbjct: 990  GERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 1049

Query: 118  RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVP 177
                    A + G   R +  PA    +PGPA   R +PG +     +G +G   A  + 
Sbjct: 1050 GPPGPVGPAGKSGD--RGESGPAGPAGAPGPAGS-RGAPGPQGPRGDKGETGERGAAGIK 1106

Query: 178  LHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ-----HRWPP 232
             H G PG  G         Q     + GP  P      RGPV  SG   +     H  P 
Sbjct: 1107 GHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGP------RGPVGPSGPPGKDGTSGHPGPI 1160

Query: 233  GA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGG 288
            G   P  + GE G E       +P  PG  G  GP  GG+       G A +A +GG
Sbjct: 1161 GPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGV-------GAAAIAGIGG 1210



 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 69/229 (30%), Positives = 86/229 (37%), Gaps = 31/229 (13%)

Query: 67  PPPAPPPPP-------------PPGGPSRSERPRAGLRPGAFVSPGPLGRRASC-SGRAG 112
           PP AP  PP             PPG P R+  P    +PG+  SPGP G   SC +G   
Sbjct: 91  PPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQN 150

Query: 113 SAGR-----LRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGR 167
            + +     ++   A    A   GPA    PP     S  P SP      G PG    G+
Sbjct: 151 YSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEP--GQ 208

Query: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGMTRGPVV 220
           +G       P   GP G +G   E  R  +  +    GPP        PG  GM +G   
Sbjct: 209 AGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGM-KGHRG 267

Query: 221 LSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPR-APGRAGGGGPPG 268
             G N + +   GA   +      GE  A     PR APG  G  G PG
Sbjct: 268 FDGRNGE-KGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPG 315


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 87/311 (27%), Positives = 106/311 (34%), Gaps = 46/311 (14%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP  L G +  P +  ++      G    +G  G        PRG    G PG P  R  
Sbjct: 2108 GPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPG-----PRG--QDGNPGLPGERGM 2160

Query: 66   APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
            A P   P    P GP            G    PGP G      G AG AG    S     
Sbjct: 2161 AGPEGKPGLQGPRGPPGPV--------GGHGDPGPPG----APGLAGPAGPQGPSGLKGE 2208

Query: 126  AAQRGGPARAQVPPALRTFSPGPASP-----PRASPG--------GRPGSEAR-GRSGAE 171
              + G P R    P      PGP  P     P+ SPG        G+PG+  R G SG +
Sbjct: 2209 PGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKD 2268

Query: 172  CARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWP 231
              R  P   G PG+ G+      K +   T A G    G+ G         G+       
Sbjct: 2269 GDRGSP---GVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGE 2325

Query: 232  PGASPSRSL----------GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLA 281
            PGA   R L          G AG         +  APG  G  G PG G+P     PG  
Sbjct: 2326 PGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPP 2385

Query: 282  RLAALGGLPSI 292
             +    GLP +
Sbjct: 2386 GVKGDLGLPGL 2396



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 96/360 (26%), Positives = 124/360 (34%), Gaps = 94/360 (26%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-AGAPGS---PL 61
            GP+   G++       +     + GR+  +G  GA       P GA   AG PG    P 
Sbjct: 1755 GPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGP--SGPNGAAGKAGDPGRDGLPG 1812

Query: 62   YRVSAPPPAPPPPPP-PGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
             R     P P  PP  PG P    +P    + G    PG  GR+    G +G++GR    
Sbjct: 1813 LRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGE-KGDSGASGR---E 1868

Query: 121  AAALSAAQRGGPA--RAQVPPALRTFSPGPASPPRAS----PGGRPGSEARGRSGAECAR 174
                   +RG P     Q PP L    PGP  PP       PGG      RG +G++  +
Sbjct: 1869 GRDGPKGERGAPGILGPQGPPGL----PGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQ 1924

Query: 175  RVPLHHGPPGASGVGSERDRKFQLHQTPA------------------------------- 203
             +P   G  G  G     DR  +     A                               
Sbjct: 1925 GLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDS 1984

Query: 204  --RGPP-------FPGISGM-----TRGPVVLSGVNRQHRWPPGAS-------------- 235
              +GPP       FPG  G+       GP    G+    R PPG S              
Sbjct: 1985 GEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGL 2044

Query: 236  PSRS--LGEAG--GERPARALR----------RPRAPGRAGGGGPPGGGIPACSIGPGLA 281
            P R+  +GEAG  GER  R  +           P  PG  G  GPPG  +     GPGL+
Sbjct: 2045 PGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLS 2104



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 86/297 (28%), Positives = 102/297 (34%), Gaps = 38/297 (12%)

Query: 15   RTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPP 74
            R P      A     G   E G  G G        G ++ G PG P    S  P  P  P
Sbjct: 1388 RGPPGLPGTAMKGDKGDRGERGPPGPGE-------GGIAPGEPGLPGLPGSPGPQGPVGP 1440

Query: 75   PPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--SCSGRAGSAGRLRCSAAALSAAQRG-- 130
            P   G        A   PG   SPG  G R      G  G  G       A    +RG  
Sbjct: 1441 PGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPP 1500

Query: 131  GPARAQVPPAL--RTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGV 188
            GPA ++  P +  R  + GP  PP   P GR G +       + A   P   GP G  G 
Sbjct: 1501 GPAGSRGLPGVAGRPGAKGPEGPP--GPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGD 1558

Query: 189  GSERDRKFQLHQTPARGPP---FPGISGM-----TRGPVVLSGVNRQHRWPPGAS-PSRS 239
                  +        RGPP    PG  G       RGP+ L+G       PPG S P   
Sbjct: 1559 VGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTG----RAGPPGDSGPPGE 1614

Query: 240  LGEAGGERPARAL---RRPRAPGRAGGGGPPGG-GIPACSIGPGLARLAALGGLPSI 292
             G+ G   P   +    R    G  G  GPPG  G+      PG A    L G P +
Sbjct: 1615 KGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGL------PGKAGERGLRGAPGV 1665



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 72/250 (28%), Positives = 83/250 (33%), Gaps = 56/250 (22%)

Query: 49   RGAVSA-GAPGSPLYRVSAPPPAPPPPPP--------------PGGPSRSERPRAGLRPG 93
            RG V   G PG P  R  AP P  PP                 PG P R+  P     PG
Sbjct: 1265 RGQVGPPGDPGLP-GRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPG 1323

Query: 94   AFVSPGPLGRRASCS--GRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP 151
               SPG  G R      G  G  G        +     G P R           PGP+ P
Sbjct: 1324 LKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKG--------DPGPSGP 1375

Query: 152  P-RASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPG 210
            P    P G PG                   GPPG  G   + D+         RGPP PG
Sbjct: 1376 PGPRGPLGDPGP-----------------RGPPGLPGTAMKGDK----GDRGERGPPGPG 1414

Query: 211  ISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG--GERPARALRRPRAPGRAGGGGPPG 268
              G+  G   L G+      P    P   +G  G  GE+       P  PG+ G  G  G
Sbjct: 1415 EGGIAPGEPGLPGL------PGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQG 1468

Query: 269  GGIPACSIGP 278
               P  +IGP
Sbjct: 1469 PRGPPGAIGP 1478



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 88/305 (28%), Positives = 100/305 (32%), Gaps = 45/305 (14%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-AGAPGSPLYRV 64
            GPR   G+Q           L + G    +G  G      R P G    AG PG      
Sbjct: 1563 GPRGATGVQ----GERGPPGLVLPGDPGPKGDPGD-----RGPIGLTGRAGPPGD----- 1608

Query: 65   SAPP-----PAPPPPPPPGGPSRSERPRAGLR-----PGAFVSPGPLGRRA--SCSGRAG 112
            S PP     P  P PP P GP R      G +     PG    PG  G R      G  G
Sbjct: 1609 SGPPGEKGDPGRPGPPGPVGP-RGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRG 1667

Query: 113  SAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAEC 172
              G            + G P  +   P      PGP  PP       PG+  +G  G   
Sbjct: 1668 PVGEKGDQGDPGEDGRNGSPGSSG--PKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRG 1725

Query: 173  ARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPP 232
                    G PG  G   ER  +        RGPP P      RGP    G     R PP
Sbjct: 1726 QEGPRGPKGDPGLPGAPGERGIE------GFRGPPGPQGDPGVRGPAGEKG----DRGPP 1775

Query: 233  GASPSRSL----GEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALG 287
            G      L    G AG   P  A  +   PGR G  G  G  G+P  S  PGL       
Sbjct: 1776 GLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGED 1835

Query: 288  GLPSI 292
            G P +
Sbjct: 1836 GKPGL 1840



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 81/302 (26%), Positives = 100/302 (33%), Gaps = 49/302 (16%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            G   L G    P       +    G     GA G        P  A + G PG+P  + S
Sbjct: 1272 GDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGS----PGRAGNPGTPGAPGLKGS 1327

Query: 66   APPPAPPPPPPPGGPSRSERPRAGLRPGAFV---SPGPLGRRA--SCSGRAGSAGRL--- 117
               P P   P   GP R  +   G  PG  +    PG  GR+     SG  G  G L   
Sbjct: 1328 PGLPGPRGDPGERGP-RGPKGEPG-APGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDP 1385

Query: 118  --RCSAAALSAAQRG-----------GPARAQVPPALRTFSPGPASPPRASPGGRPGSEA 164
              R        A +G           GP    + P        P SP    P G PG + 
Sbjct: 1386 GPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKG 1445

Query: 165  RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPF----PGISGMTRGPVV 220
                  + A  +P   G PG  G                RGPP      G  G   GP+ 
Sbjct: 1446 EKGDSEDGAPGLPGQPGSPGEQG---------------PRGPPGAIGPKGDRGFP-GPLG 1489

Query: 221  LSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGPG 279
             +G  +  R PPG + SR L    G   A+    P  P GR G  G PG       +GP 
Sbjct: 1490 EAG-EKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPA 1548

Query: 280  LA 281
            +A
Sbjct: 1549 VA 1550



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 84/302 (27%), Positives = 103/302 (34%), Gaps = 67/302 (22%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP  L G Q +P          + G+  E G  GA  +           GA G    R S
Sbjct: 2233 GPSGLVGPQGSPG---------LPGQVGETGKPGAPGR----------DGASGKDGDRGS 2273

Query: 66   APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
               P  P  P P GP     P           PG  G + +  G AG    L     A  
Sbjct: 2274 PGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGD---LVGEPGAKG 2330

Query: 126  AAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPPG 184
                 GP R +   A R   PG   P      G PG +  +G  G      VP   GPPG
Sbjct: 2331 DRGLPGP-RGEKGEAGRAGEPG--DPGEDGQKGAPGPKGFKGDPGV----GVPGSPGPPG 2383

Query: 185  ASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG 244
              GV  +                  G+ G+   P V+        +P    P   +G+ G
Sbjct: 2384 PPGVKGDL-----------------GLPGLPGAPGVVG-------FPGQTGPRGEMGQPG 2419

Query: 245  --GERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PGLARLAALGGLPSILESSRLLPS 301
              GE   R L  P  PGR G  GP G   P  S+G PG + L    G P +      LP 
Sbjct: 2420 PSGE---RGLAGP--PGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGV-----GLPG 2469

Query: 302  PR 303
            PR
Sbjct: 2470 PR 2471



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 71/249 (28%), Positives = 77/249 (30%), Gaps = 32/249 (12%)

Query: 31   RADEEGAAGAGSKLWRRPRGAVSAGAPG-SPLYRVSAPPPAPPPPPPPGGPSRSERPRAG 89
            R D       GSK    P    SAG PG   L      P A   P  PG P +   P   
Sbjct: 2553 RGDNGDPGDKGSK--GEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIR 2610

Query: 90   LRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPA 149
               G     GP G +    G  G  G            + G P R    P L        
Sbjct: 2611 GEKGDVGFMGPRGLK----GERGVKGACGLDGEKGDKGEAGPPGR----PGLAGHKGEMG 2662

Query: 150  SPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKF------QLHQTPA 203
             P      G PG E  G  G +  R      GP G  G   ER                +
Sbjct: 2663 EPGVPGQSGAPGKE--GLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGS 2720

Query: 204  RGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGG 263
             GPP P  S   RGP  L G  +  R PPG            ER   A   P APG  G 
Sbjct: 2721 AGPPGPPGSVGPRGPEGLQG-QKGERGPPG------------ERVVGAPGVPGAPGERGE 2767

Query: 264  GGPPGGGIP 272
             G PG   P
Sbjct: 2768 QGRPGPAGP 2776



 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 58/181 (32%), Positives = 65/181 (35%), Gaps = 33/181 (18%)

Query: 128  QRGGPARAQVPPALRTFSPGPASPP--------RASPG--GRPGSEARGRSGAECARRVP 177
            Q G P    +P   RT +PGP  PP        R  PG  GRPGS   GR+G       P
Sbjct: 1267 QVGPPGDPGLPG--RTGAPGPQGPPGSATAKGERGFPGADGRPGSP--GRAGNPGTPGAP 1322

Query: 178  LHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPS 237
               G PG  G   +   +         G P   I G   G     G +     PPG  P 
Sbjct: 1323 GLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKG-DPGPSGPPG--PR 1379

Query: 238  RSLGEAGGERPARALRRPRAPGRA--------GGGGPPGGGIPACSIGPGLARLAALGGL 289
              LG+ G   P      P  PG A        G  GPPG G     I PG   L  L G 
Sbjct: 1380 GPLGDPGPRGP------PGLPGTAMKGDKGDRGERGPPGPG--EGGIAPGEPGLPGLPGS 1431

Query: 290  P 290
            P
Sbjct: 1432 P 1432



 Score = 36.2 bits (82), Expect = 0.038
 Identities = 75/266 (28%), Positives = 90/266 (33%), Gaps = 34/266 (12%)

Query: 30   GRADEEGAAGA----GSKLWRRPRGAV-SAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSE 84
            GR  +EG  G     GS+  R  +G V SAG  G      SA    PP P    G     
Sbjct: 2484 GRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDK--GDSAVILGPPGPRGAKGDMGER 2541

Query: 85   RPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALR 142
             PR     G     GP G      G  GS G      +A     RG  GP   Q  P   
Sbjct: 2542 GPR-----GLDGDKGPRGDNGD-PGDKGSKGEPGDKGSAGLPGLRGLLGP---QGQPGAA 2592

Query: 143  TFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQL---- 198
                 P SP +    G  G   +G  G    R +    G  GA G+  E+  K +     
Sbjct: 2593 GIPGDPGSPGKDGVPGIRGE--KGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPG 2650

Query: 199  ------HQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARAL 252
                  H+     P  PG SG   G   L G      +     P    GE G ER    +
Sbjct: 2651 RPGLAGHKGEMGEPGVPGQSGAP-GKEGLIGPKGDRGFDGQPGPKGDQGEKG-ERGTPGI 2708

Query: 253  RRPRAPGRAGGGGPPGGGIPACSIGP 278
                 PG +G  G  G   P  S+GP
Sbjct: 2709 GG--FPGPSGNDGSAGPPGPPGSVGP 2732



 Score = 34.7 bits (78), Expect = 0.11
 Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 22/100 (22%)

Query: 182  PPGASGVGSERDRKFQLHQTPARGPPF-PGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 240
            P G  G   E   + Q+      GPP  PG+ G T  P          + PPG++ ++  
Sbjct: 1252 PKGQKGEPGEMGLRGQV------GPPGDPGLPGRTGAP--------GPQGPPGSATAK-- 1295

Query: 241  GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGL 280
            GE G      A  RP +PGRAG  G PG   P     PGL
Sbjct: 1296 GERGFPG---ADGRPGSPGRAGNPGTPGA--PGLKGSPGL 1330


>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
          Length = 1028

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 77/268 (28%), Positives = 90/268 (33%), Gaps = 41/268 (15%)

Query: 12  GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAP 71
           G+Q  P    +  A  + G   E GA G              AG PGS         P  
Sbjct: 353 GIQGPPGPKGDPGAFGLKGEKGEPGADG-------------EAGRPGSSGPSGDEGQPGE 399

Query: 72  PPPPPPGGPSRSE-RPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG 130
           P PP   G +  E  P     PG    PG  G R    G  G+ G       A     +G
Sbjct: 400 PGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPR----GTPGTRGPRGDPGEAGPQGDQG 455

Query: 131 GPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGS 190
                 VP       PG A P    P G  G E  G  G+E AR  P   GPPG  G+  
Sbjct: 456 REGPVGVPG-----DPGEAGP--IGPKGYRGDE--GPPGSEGARGAPGPAGPPGDPGLMG 506

Query: 191 ERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG------ 244
           ER             P FPG  G    P    G+N    +P         G+ G      
Sbjct: 507 ERGEDGPAGNGTEGFPGFPGYPGNRGAP----GINGTKGYPGLKGDEGEAGDPGDDNNDI 562

Query: 245 ---GERPARALRRPRAP-GRAGGGGPPG 268
              G + A+  R P  P G  G  GPPG
Sbjct: 563 APRGVKGAKGYRGPEGPQGPPGHQGPPG 590



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 65/226 (28%), Positives = 79/226 (34%), Gaps = 38/226 (16%)

Query: 55  GAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSA 114
           G PG P  + S        PP P G            PGAF   G  G      G  G A
Sbjct: 338 GYPGLPGCKGSPGFDGIQGPPGPKGD-----------PGAFGLKGEKGE----PGADGEA 382

Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP-PRASPGGRPGSEARGRSGAECA 173
           GR   S  +    Q G P     PP  +  +    +P P  +PG R G   RG  G    
Sbjct: 383 GRPGSSGPSGDEGQPGEPG----PPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGT 438

Query: 174 RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
           R      G PG +G   ++ R     + P   P  PG +G    P+   G  R    PPG
Sbjct: 439 RGP---RGDPGEAGPQGDQGR-----EGPVGVPGDPGEAG----PIGPKGY-RGDEGPPG 485

Query: 234 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 279
           +  +R     G   PA     P   G  G  GP G G       PG
Sbjct: 486 SEGAR-----GAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPGFPG 526


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 75/257 (29%), Positives = 94/257 (36%), Gaps = 15/257 (5%)

Query: 17   PAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSA-GAPGSPLYRVSAPPPAPPPP 74
            P   A + +  I G +   G+ G  G    + P G     G  G P  R   P PA PP 
Sbjct: 1179 PGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLR-GDPGPAGPPG 1237

Query: 75   --PPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGP 132
               PPG   ++  P      G    PGP G     +GR G+ G       A+    R GP
Sbjct: 1238 LMGPPGFKGKTGHPGLPGPKGDCGKPGPPGS----TGRPGAEGE----PGAMGPQGRPGP 1289

Query: 133  ARAQVPPALRTFSPGPASPPRAS-PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSE 191
                 PP      PGPA        G R  +  RG +G       P H GPPG  G    
Sbjct: 1290 PGHVGPPG-PPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGA 1348

Query: 192  RDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA 251
              ++    +    GPP P       G    +G   +   P G   S S+G  G   PA  
Sbjct: 1349 AGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGE 1408

Query: 252  LRRPRAPGRAGGGGPPG 268
               P APG +G  G PG
Sbjct: 1409 RGHPGAPGPSGSPGLPG 1425



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 79/285 (27%), Positives = 104/285 (36%), Gaps = 58/285 (20%)

Query: 55   GAPGSPLYRVSAPPPAPPPPP-------PPGGPS-RSERPRAGLRPGAFVSPGPLGRRA- 105
            G  G P  R S  PP P  PP        PG P  + ER   GL  G    PGP G+   
Sbjct: 1033 GEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLT-GDKGEPGPPGQPGY 1091

Query: 106  -SCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP--PRASPGGRPGS 162
               +G  G  G         SA ++G P     PP      PGP  P  PR   G +  S
Sbjct: 1092 PGATGPPGLPGIKGERGYTGSAGEKGEPG----PPGSEGL-PGPPGPAGPRGERGPQGNS 1146

Query: 163  EARGRSGAECARRVPLHHGPPGASGV-------GSERDRKFQLHQTPARGPPFPGISGMT 215
              +G  G +     P   GPPG  G        G + ++  +  + P+  P  PG  G  
Sbjct: 1147 GEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPP 1206

Query: 216  --RGPVVLSGVNRQHRWP-----PGASPSRSL-------------------GEAGGERPA 249
              +GP  L G++ +   P     PG +    L                   G+ G   P 
Sbjct: 1207 GIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPP 1266

Query: 250  RALRRPRAPGRAGGGGPPGGGIPACSIG-------PGLARLAALG 287
             +  RP A G  G  GP G   P   +G       PG A ++A+G
Sbjct: 1267 GSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVG 1311



 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 70/252 (27%), Positives = 89/252 (35%), Gaps = 28/252 (11%)

Query: 74  PPPPGGPSRSERPRAGLR-----PGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQ 128
           P PPG     ++ +AG R      G   +PG  G   + +GR G +G       A    +
Sbjct: 661 PGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGT-TGRPGLSGEPGVQGPAGPKGE 719

Query: 129 RGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGV 188
           +G    A  P    T +     P +  P G  G E  GR G      +P   GPPG  GV
Sbjct: 720 KGDGCTA-CPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGV 778

Query: 189 GSE---RDRKFQLHQTPARGPPFPGISGM--TRGPVVLSGVNRQHR-----------WPP 232
             E     R  Q  Q     P  PGI G+   RGP   +G                  PP
Sbjct: 779 QGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPP 838

Query: 233 GASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSI-GPGLARLAALGGLPS 291
           GAS S   G  G +        P   G  G  G PG     CS    G    + + G P 
Sbjct: 839 GASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPG----ECSCPSQGDLIFSGMPGAPG 894

Query: 292 ILESSRLLPSPR 303
           +   S   P P+
Sbjct: 895 LWMGSSWQPGPQ 906



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 75/262 (28%), Positives = 96/262 (36%), Gaps = 43/262 (16%)

Query: 55   GAPGSPLYRVSAPPP----APPPPPPPGGPS-------------RSERPRAGLRPGAFVS 97
            G PG P  R    PP    +P PP P G P              + ER   GL  G    
Sbjct: 1024 GPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGL-TGDKGE 1082

Query: 98   PGPLGRRA--SCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP--PR 153
            PGP G+      +G  G  G         SA ++G P     PP      PGP  P  PR
Sbjct: 1083 PGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPG----PPGSEGL-PGPPGPAGPR 1137

Query: 154  ASPGGRPGSEARGRSGAECARRVPLHHGPPGASG-------VGSERDRKFQLHQTPARGP 206
               G +  S  +G  G +     P   GPPG  G        G + ++  +  + P+  P
Sbjct: 1138 GERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLP 1197

Query: 207  PFPGISGM--TRGPVVLSGVNRQH-----RWPPG-ASPSRSLGEAGGERPARALRRPRAP 258
              PG  G    +GP  L G++ +      R  PG A P   +G  G +        P   
Sbjct: 1198 GSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPK 1257

Query: 259  GRAGGGGPPGG-GIPACSIGPG 279
            G  G  GPPG  G P     PG
Sbjct: 1258 GDCGKPGPPGSTGRPGAEGEPG 1279



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 82/298 (27%), Positives = 97/298 (32%), Gaps = 79/298 (26%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSP-LYRV 64
           GP+   G   T           ++GR  + G  G      + P G    G PG P L  V
Sbjct: 715 GPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGE-----QGPEGVGRPGKPGQPGLPGV 769

Query: 65  SAPP-----PAPPPPP------PPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGS 113
             PP        P PP      P G P     P     PG    PGP G + +  G  G 
Sbjct: 770 QGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGA-QGSPGV 828

Query: 114 AGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECA 173
            G                             + GP  PP AS  G PG +  G+ G    
Sbjct: 829 KG-----------------------------ATGPVGPPGASVSGPPGRD--GQQGQTGL 857

Query: 174 RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
           R  P   GP G  G   E          P++G      SGM   P +  G +    W PG
Sbjct: 858 RGTPGEKGPRGEKGEPGE-------CSCPSQGDLI--FSGMPGAPGLWMGSS----WQPG 904

Query: 234 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 290
                  G  G   P      P  PG  G  G PG  G+P     PGL   A LG LP
Sbjct: 905 PQ-----GPPGIPGP------PGPPGVPGLQGVPGNNGLPG---QPGLT--AELGSLP 946



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 76/295 (25%), Positives = 99/295 (33%), Gaps = 74/295 (25%)

Query: 30   GRADEEGAAGAGSKLWRRPRGAVS----AGAPGSPLYRVSAPPPAPPPPPPPGGPSRSER 85
            G   + G AG  +   +  RGA      AG PG P      PP  P PP  PG    + +
Sbjct: 1297 GPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQP-----GPPGHPGPPGEPGTDGAAGK 1351

Query: 86   PRAGLRPGAFVSPGPLGR--RASCSGRAGSAGRLRCSAAALSAAQRGGPARAQV-----P 138
                 + G +  PGP G    A   G+AG  GR         A   GGP ++       P
Sbjct: 1352 EGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGR---------AGMPGGPGKSGSMGPVGP 1402

Query: 139  PALRTFSPGPASP-PRASPG--GRPGS--------------------------------- 162
            P        P +P P  SPG  G PGS                                 
Sbjct: 1403 PGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRM 1462

Query: 163  -------EARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT 215
                    A GR G       P   G PG+ G+  +  R+ +      RG   PG  G  
Sbjct: 1463 QFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRG--LPGTKG-E 1519

Query: 216  RGPVVLSGVNRQHRWP--PGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
            +G + + G+  ++  P  PG       G+ G   P      P  PG  G  G PG
Sbjct: 1520 KGDIGI-GIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPG 1573



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 71/252 (28%), Positives = 85/252 (33%), Gaps = 46/252 (18%)

Query: 53   SAGAPGSPLYRVSAPPPAP--PPPPPPGGPSRSERPRAGL----------RPGAFVSPGP 100
            SAG  G P      PP +   P PP P GP     P+             +PG    PGP
Sbjct: 1112 SAGEKGEP-----GPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGP 1166

Query: 101  LGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRAS-PGGR 159
             G      G+ GS G     A   S   RG        P+    SPGP  PP    P G 
Sbjct: 1167 PG----FPGKVGSPGPPGPQAEKGSEGIRG--------PSGLPGSPGPPGPPGIQGPAGL 1214

Query: 160  PGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPV 219
             G +  G+ G    R  P   GPPG  G    + +           P  PG  G    P 
Sbjct: 1215 DGLD--GKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGH--------PGLPGPKGDCGKPG 1264

Query: 220  VLSGVNRQHRWPPGASPSR-SLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
                  R     PGA     ++G  G   P   +  P  PG+ G  G    G+       
Sbjct: 1265 PPGSTGR-----PGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGAT 1319

Query: 279  GLARLAALGGLP 290
            G   LA L G P
Sbjct: 1320 GERGLAGLPGQP 1331



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 73/301 (24%), Positives = 99/301 (32%), Gaps = 70/301 (23%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           G   + G+   P        + + G   ++G  G     +  P G   AG PG P   + 
Sbjct: 405 GDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPG-----FVGPEGL--AGEPGPP--GLP 455

Query: 66  APPPA--PPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
            PP    P  P  PGGP                 PGP G + S SG  G  G        
Sbjct: 456 GPPGIGLPGTPGDPGGP-----------------PGPKGDKGS-SGIPGKEGPGGKPGKP 497

Query: 124 LSAAQRGGPARA--QVPPALRTFSPGPASP-PRASPG------GRPGSEA----RGRSGA 170
               ++G P      +P   + F   P  P P+  PG      G PG +     +G    
Sbjct: 498 GVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCL 557

Query: 171 ECARRVPLHH-------------------GPPGASGVGSERDRKFQLHQTPARGPPFPGI 211
            C+  V   H                   G PG +GV   +  K    +    G P P  
Sbjct: 558 SCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPP- 616

Query: 212 SGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGI 271
                GPV  +G+      P    P+ S  + G     R +  P   G  G  GPPG G+
Sbjct: 617 -----GPVGPAGIKGAKGEPCEPCPALSNLQDGD---VRVVALPGPSGEKGEPGPPGFGL 668

Query: 272 P 272
           P
Sbjct: 669 P 669



 Score = 32.3 bits (72), Expect = 0.54
 Identities = 66/280 (23%), Positives = 86/280 (30%), Gaps = 49/280 (17%)

Query: 22  NEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS 81
           +   LA SG    +G  G        P      GA G+   R+S   P      P G   
Sbjct: 326 SNVTLAPSGPKGGKGERGLPGP----PGSKGEKGARGNDCVRISPDAPLQCAEGPKGEKG 381

Query: 82  RSERPRAGLRPGAFVSPGPLGRRAS-----CSGRAGSAGRLRCSAAALSAAQRGGPARAQ 136
            S        PG+    G  G +         G+ G  GR           Q+G P    
Sbjct: 382 ESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGF-- 439

Query: 137 VPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKF 196
           V P      PGP   P     G PG+   G  G       P   G  G+SG+  +     
Sbjct: 440 VGPEGLAGEPGPPGLPGPPGIGLPGTP--GDPGGP-----PGPKGDKGSSGIPGK----- 487

Query: 197 QLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPR 256
              + P   P  PG+ G    P  +         P G      L                
Sbjct: 488 ---EGPGGKPGKPGVKGEKGDPCEVCPT-----LPEGFQNFVGL---------------- 523

Query: 257 APGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESS 296
            PG+ G  G PG  +PA    PG+  +    G P +  SS
Sbjct: 524 -PGKPGPKGEPGDPVPARG-DPGIQGIKGEKGEPCLSCSS 561


>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
            sapiens]
          Length = 1899

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 91/284 (32%), Positives = 107/284 (37%), Gaps = 45/284 (15%)

Query: 37   AAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFV 96
            A G G+K  R  RG   +GA G P  R    PP P  PP P GP+    P    R G   
Sbjct: 1591 AGGPGAKGPRGERGI--SGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKG 1648

Query: 97   SPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTF-----SPGPASP 151
              G  G      GR G+ G               GP     PP  R F     + GP  P
Sbjct: 1649 DAGEPG----LPGRTGTPG-------------LPGPPGPMGPPGDRGFTGKDGAMGPRGP 1691

Query: 152  PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGV-GSERDR----KFQLHQTPARGP 206
            P   P G PGS   G +G       P  HG PG SG+ G + DR       + +  AR  
Sbjct: 1692 P--GPPGSPGSP--GVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQV 1747

Query: 207  PFPGISG-MTRGPVVLSGV------NRQHRWPPGASPSRSLGEAGGERPARALRRPRAPG 259
                ISG M R   +L+ +      +R    PPG  P    G AG         RP  PG
Sbjct: 1748 CEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPG--PPGPPGSAGARGEPGPGGRPGFPG 1805

Query: 260  RAGGGGPPG-GGIPA--CSIGPGLARLAALGGLPSILESSRLLP 300
              G  GPPG  G+P      G G +    L G P     SR  P
Sbjct: 1806 TPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGP 1849



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 72/266 (27%), Positives = 94/266 (35%), Gaps = 61/266 (22%)

Query: 28   ISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLY--RVSAPPPAPPPPPP--PGGPSR 82
            + G A E G  G  G+     P G +  G PG   +  +  A  P  PP PP  PG P  
Sbjct: 1646 MKGDAGEPGLPGRTGTPGLPGPPGPM--GPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGV 1703

Query: 83   SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQ--------RGGPAR 134
            +       +PG    PGP G +     R   A +    A A    +        R     
Sbjct: 1704 TGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMNRFNQML 1763

Query: 135  AQVPPALRTFS-----PGPASPPRAS-------PGGRPGSEARGRSGAECARRVPLHHGP 182
             Q+P   ++       PGP  PP ++       PGGRPG               P   GP
Sbjct: 1764 NQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPG-----------TPGMQGP 1812

Query: 183  PGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 242
            PG  G+  E+  +      P   P  PG  G +R              PPG++ SR  G 
Sbjct: 1813 PGERGLPGEKGERGTGSSGPRGLPGPPGPQGESR------------TGPPGSTGSR--GP 1858

Query: 243  AGGERPARALRRPRAPGRAGGGGPPG 268
             G          P  PG +G  GPPG
Sbjct: 1859 PG---------PPGRPGNSGIRGPPG 1875



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 48/153 (31%), Positives = 54/153 (35%), Gaps = 29/153 (18%)

Query: 62   YRVSAPPPAPP-PPPPPGGPSRSERPRAGLRPGAFVSP---GPLGRRASCSGRAGSAGRL 117
            Y+ S   P PP PP PPG       P  G RPG   +P   GP G R    G  G  G  
Sbjct: 1770 YQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-GLPGEKGERGTG 1828

Query: 118  RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVP 177
                  L     G    ++  P   T S GP  PP     GRPG+     SG        
Sbjct: 1829 SSGPRGLPGPP-GPQGESRTGPPGSTGSRGPPGPP-----GRPGN-----SGI------- 1870

Query: 178  LHHGPPGASGVGSERDRKFQLHQTPARGPPFPG 210
               GPPG  G         Q    P  G  +PG
Sbjct: 1871 --RGPPGPPGYCDSS----QCASIPYNGQGYPG 1897



 Score = 33.1 bits (74), Expect = 0.32
 Identities = 23/83 (27%), Positives = 26/83 (31%), Gaps = 10/83 (12%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP    G   TP          + G   E G   +G +    P G       G P    S
Sbjct: 1796 GPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGS 1855

Query: 66   APPPAPP----------PPPPPG 78
              PP PP          PP PPG
Sbjct: 1856 RGPPGPPGRPGNSGIRGPPGPPG 1878


>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
            sapiens]
          Length = 3063

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 91/284 (32%), Positives = 107/284 (37%), Gaps = 45/284 (15%)

Query: 37   AAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFV 96
            A G G+K  R  RG   +GA G P  R    PP P  PP P GP+    P    R G   
Sbjct: 2755 AGGPGAKGPRGERGI--SGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKG 2812

Query: 97   SPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTF-----SPGPASP 151
              G  G      GR G+ G               GP     PP  R F     + GP  P
Sbjct: 2813 DAGEPG----LPGRTGTPG-------------LPGPPGPMGPPGDRGFTGKDGAMGPRGP 2855

Query: 152  PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGV-GSERDR----KFQLHQTPARGP 206
            P   P G PGS   G +G       P  HG PG SG+ G + DR       + +  AR  
Sbjct: 2856 P--GPPGSPGSP--GVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQV 2911

Query: 207  PFPGISG-MTRGPVVLSGV------NRQHRWPPGASPSRSLGEAGGERPARALRRPRAPG 259
                ISG M R   +L+ +      +R    PPG  P    G AG         RP  PG
Sbjct: 2912 CEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPG--PPGPPGSAGARGEPGPGGRPGFPG 2969

Query: 260  RAGGGGPPG-GGIPA--CSIGPGLARLAALGGLPSILESSRLLP 300
              G  GPPG  G+P      G G +    L G P     SR  P
Sbjct: 2970 TPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGP 3013



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 72/266 (27%), Positives = 94/266 (35%), Gaps = 61/266 (22%)

Query: 28   ISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLY--RVSAPPPAPPPPPP--PGGPSR 82
            + G A E G  G  G+     P G +  G PG   +  +  A  P  PP PP  PG P  
Sbjct: 2810 MKGDAGEPGLPGRTGTPGLPGPPGPM--GPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGV 2867

Query: 83   SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQ--------RGGPAR 134
            +       +PG    PGP G +     R   A +    A A    +        R     
Sbjct: 2868 TGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMNRFNQML 2927

Query: 135  AQVPPALRTFS-----PGPASPPRAS-------PGGRPGSEARGRSGAECARRVPLHHGP 182
             Q+P   ++       PGP  PP ++       PGGRPG               P   GP
Sbjct: 2928 NQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPG-----------TPGMQGP 2976

Query: 183  PGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 242
            PG  G+  E+  +      P   P  PG  G +R              PPG++ SR  G 
Sbjct: 2977 PGERGLPGEKGERGTGSSGPRGLPGPPGPQGESR------------TGPPGSTGSR--GP 3022

Query: 243  AGGERPARALRRPRAPGRAGGGGPPG 268
             G          P  PG +G  GPPG
Sbjct: 3023 PG---------PPGRPGNSGIRGPPG 3039



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 48/153 (31%), Positives = 54/153 (35%), Gaps = 29/153 (18%)

Query: 62   YRVSAPPPAPP-PPPPPGGPSRSERPRAGLRPGAFVSP---GPLGRRASCSGRAGSAGRL 117
            Y+ S   P PP PP PPG       P  G RPG   +P   GP G R    G  G  G  
Sbjct: 2934 YQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-GLPGEKGERGTG 2992

Query: 118  RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVP 177
                  L     G    ++  P   T S GP  PP     GRPG+     SG        
Sbjct: 2993 SSGPRGLPGPP-GPQGESRTGPPGSTGSRGPPGPP-----GRPGN-----SGI------- 3034

Query: 178  LHHGPPGASGVGSERDRKFQLHQTPARGPPFPG 210
               GPPG  G         Q    P  G  +PG
Sbjct: 3035 --RGPPGPPGYCDSS----QCASIPYNGQGYPG 3061



 Score = 33.1 bits (74), Expect = 0.32
 Identities = 23/83 (27%), Positives = 26/83 (31%), Gaps = 10/83 (12%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP    G   TP          + G   E G   +G +    P G       G P    S
Sbjct: 2960 GPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGS 3019

Query: 66   APPPAPP----------PPPPPG 78
              PP PP          PP PPG
Sbjct: 3020 RGPPGPPGRPGNSGIRGPPGPPG 3042


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 93/326 (28%), Positives = 118/326 (36%), Gaps = 74/326 (22%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVS----AGAPGSP 60
            GP    G Q  P    N       G   E G+ G  G    + PRG       +G PG P
Sbjct: 1103 GPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEP 1162

Query: 61   LYRVSAPP--------------------PAPPPPPPPGGP-----SRSERPRAGLRPGAF 95
                  PP                    P  P PP  GGP     ++ +R   G  PG  
Sbjct: 1163 -----GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDG-EPGQP 1216

Query: 96   VSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT-FSPGPASPPRA 154
             SPGP G     +G  G  G+   + +  S  ++GG      P A+      GP  P  A
Sbjct: 1217 GSPGPTGE----NGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGP--A 1270

Query: 155  SPGGRPGSEA----------RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPAR 204
             P G+PG +           +GR GA      P   GPPG  G+  +   K +       
Sbjct: 1271 GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGE------- 1323

Query: 205  GPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGG 264
                PG+ G+  GP    G  +  R  PG  P  S G+ G       +  P A G  G G
Sbjct: 1324 -KGHPGLIGLI-GPPGEQG-EKGDRGLPG--PQGSPGQKG------EMGIPGASGPIGPG 1372

Query: 265  GPPGGGIPACSIGPGLARLAALGGLP 290
            GPPG   PA   GP  A+ A   G P
Sbjct: 1373 GPPGLPGPA---GPKGAKGATGPGGP 1395



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 86/275 (31%), Positives = 104/275 (37%), Gaps = 44/275 (16%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GPR L G +  PA    E  + + G    EG AG                        + 
Sbjct: 291 GPRGLKGEKGEPAVL--EPGMLVEGPPGPEGPAG------------------------LI 324

Query: 66  APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
            PP     P P G P     P RAGL PG+  +PGP G       R GS G  +    A 
Sbjct: 325 GPPGIQGNPGPVGDPGERGPPGRAGL-PGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAA 383

Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
             AQ     + Q   ALR   PGP     R  P G+PGS        +   + P   GP 
Sbjct: 384 QEAQAQAILQ-QARLALRG-PPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP--RGPQ 439

Query: 184 GASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHRWPPGA----SP 236
           G +G   +  R+ +     ARG P  PG+ G  RG   L G+   + HR   GA     P
Sbjct: 440 GLTGPPGKAGRRGRAGADGARGMPGDPGVKG-DRGFDGLPGLPGEKGHRGDTGAQGLPGP 498

Query: 237 SRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
               GE G  GE   R L     P G  G  GPPG
Sbjct: 499 PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPG 533



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 77/279 (27%), Positives = 98/279 (35%), Gaps = 45/279 (16%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-AGAPGSPLYR 63
           GP+   G    P A   + A  +SG++   G  G  G +  R PRGA   +GA G+    
Sbjct: 722 GPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 781

Query: 64  VSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
               PP     P P GP+    P+          PGP G+     G  G  G+       
Sbjct: 782 GPHGPPGERGLPGPQGPNGFPGPKG--------PPGPPGK----DGLPGHPGQ------- 822

Query: 124 LSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
                     R +V    +T  PGP  P    P G     A G +G    R  P   GPP
Sbjct: 823 ----------RGEVGFQGKTGPPGP--PGVVGPQG-----AAGETGPMGERGHPGPPGPP 865

Query: 184 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
           G  G+     ++        +G P P  +    GP  L G   +   P  A      G  
Sbjct: 866 GEQGLPGTAGKE------GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 919

Query: 244 GGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
           G   P      P   G AG GGP G  G P     PG A
Sbjct: 920 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAA 958



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 76/266 (28%), Positives = 94/266 (35%), Gaps = 35/266 (13%)

Query: 23   EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGP-S 81
            +  + + G A   G AG         +G V  G PG    + +     PP PP P GP  
Sbjct: 979  QGPVGLPGPAGPPGVAGEDGD-----KGEV--GDPGQKGTKGNKGEHGPPGPPGPIGPVG 1031

Query: 82   RSERPRAGLRPGAFVSPGPLGRRASCSGRA--GSAGRLRCSAAALSAAQRG-----GPAR 134
            +     A   PGA    G  G +     R   G  G +        + ++G     GP  
Sbjct: 1032 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMG 1091

Query: 135  AQVPPALRTFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVG 189
               PP  R    GPA P     P+  PGG       G  G       P   G PG  G  
Sbjct: 1092 PPGPPGPR----GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1147

Query: 190  SERDRKFQLHQTPARGPPFP-GISG-----MTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
             ER  K +  Q    GPP P G +G        GPV   G       PPG    R    A
Sbjct: 1148 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG----DPGPPGEGGPRGQDGA 1203

Query: 244  GGERPARA-LRRPRAPGRAGGGGPPG 268
             G+R       +P +PG  G  GPPG
Sbjct: 1204 KGDRGEDGEPGQPGSPGPTGENGPPG 1229



 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 78/266 (29%), Positives = 93/266 (34%), Gaps = 32/266 (12%)

Query: 30   GRADEEGAAGAGSKLWRR-----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS--R 82
            G    +GAAG    +  R     P      G PG+     +   P PP  P   GP+  R
Sbjct: 839  GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLR 898

Query: 83   SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALR 142
                  GL PG    PG  G     SG  G AG    S     AA  GGP     PP   
Sbjct: 899  GFPGERGL-PGTAGGPGLKGNEGP-SGPPGPAG----SPGERGAAGSGGPIG---PPG-- 947

Query: 143  TFSPGPASPPRAS-----PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQ 197
               PGP  PP A+     PG +      GR G +    +P   GPPG +G   ++     
Sbjct: 948  --RPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGD 1005

Query: 198  LHQTPARGPPF----PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALR 253
              Q   +G       PG  G   GPV   G       P    P    G A G+   R   
Sbjct: 1006 PGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGARGPQGHFG-AKGDEGTRGFN 1063

Query: 254  RPRAP-GRAGGGGPPGGGIPACSIGP 278
             P  P G  G  GP G       +GP
Sbjct: 1064 GPPGPIGLQGLPGPSGEKGETGDVGP 1089



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 85/307 (27%), Positives = 107/307 (34%), Gaps = 65/307 (21%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSA-GAPGSPLYR 63
            GP    G    P A   +      G     GA G  G++ +  P G +   G PG    +
Sbjct: 1022 GPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1081

Query: 64   VSAP------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL 117
                      PP PP P  P GP+ ++ P+    PG   + GP G +    G +GS G  
Sbjct: 1082 GETGDVGPMGPPGPPGPRGPAGPNGADGPQGP--PGGVGNLGPPGEKGE-PGESGSPGIQ 1138

Query: 118  RCSAAALSAAQRGGPARAQVPPALRTFSPGPASP-----PRASPG--------GRPGSEA 164
                      +RG    +  P       PGP  P     P+ +PG        G PG   
Sbjct: 1139 GEPGVKGPRGERGEKGESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1196

Query: 165  -RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
             RG+ GA+  R      G PG+ G   E             GPP         GP+   G
Sbjct: 1197 PRGQDGAKGDRGEDGEPGQPGSPGPTGEN------------GPP---------GPLGKRG 1235

Query: 224  VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
                    P  SP  S G  GG+    A   P A G  G  GP G   PA   GP     
Sbjct: 1236 --------PAGSPG-SEGRQGGKG---AKGDPGAIGAPGKTGPVGPAGPAGKPGPD---- 1279

Query: 284  AALGGLP 290
              L GLP
Sbjct: 1280 -GLRGLP 1285



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 77/297 (25%), Positives = 93/297 (31%), Gaps = 69/297 (23%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP+   G Q  P     +      G    +GA G        P G    G  G P     
Sbjct: 548 GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG--------PHG--EKGPQGKP----- 592

Query: 66  APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA-----------SCSGRAGSA 114
             P  P    PPG P +   P      G     GPLG                 G  G  
Sbjct: 593 GLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 652

Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP-RASPGGRPGSEA----RGRSG 169
           G             +G      VP +      GP  P  R  P G PG       +G+ G
Sbjct: 653 GEDGFPGFKGDIGVKGDRGEVGVPGS--RGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLG 710

Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN---- 225
                  P   GP G+ G                  P FPG SG  +G   LSG +    
Sbjct: 711 VPGLPGYPGRQGPKGSLGF-----------------PGFPGASG-EKGARGLSGKSGPRG 752

Query: 226 -------RQHRWPPGAS-PSRSLGEAGGERP-----ARALRRPRAP-GRAGGGGPPG 268
                  R  R P GA+  S + G +GG+ P      R L  P+ P G  G  GPPG
Sbjct: 753 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG 809



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 55/184 (29%), Positives = 66/184 (35%), Gaps = 26/184 (14%)

Query: 12   GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----SAGAPGSPLYRVSAP 67
            G Q    A  +  A+   G+    G AG   K    P G      S G  G P     A 
Sbjct: 1244 GRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK--PGPDGLRGLPGSVGQQGRPGATGQAG 1301

Query: 68   PPAPPPPPP-PG----GPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRLRCS 120
            PP P  PP  PG      ++ E+   GL  G    PG  G +      G  GS G+    
Sbjct: 1302 PPGPVGPPGLPGLRGDAGAKGEKGHPGLI-GLIGPPGEQGEKGDRGLPGPQGSPGQ---- 1356

Query: 121  AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
               +      GP     PP L    PGPA P  A     PG    G  G +  +  P H 
Sbjct: 1357 KGEMGIPGASGPIGPGGPPGL----PGPAGPKGAKGATGPG----GPKGEKGVQGPPGHP 1408

Query: 181  GPPG 184
            GPPG
Sbjct: 1409 GPPG 1412



 Score = 28.5 bits (62), Expect = 7.9
 Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR-- 63
            G R L G Q +P           SG     G  G        P+GA  A  PG P     
Sbjct: 1343 GDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG--PKGAKGATGPGGPKGEKG 1400

Query: 64   VSAPPPAPPPP 74
            V  PP  P PP
Sbjct: 1401 VQGPPGHPGPP 1411


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 93/326 (28%), Positives = 118/326 (36%), Gaps = 74/326 (22%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVS----AGAPGSP 60
            GP    G Q  P    N       G   E G+ G  G    + PRG       +G PG P
Sbjct: 1082 GPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEP 1141

Query: 61   LYRVSAPP--------------------PAPPPPPPPGGP-----SRSERPRAGLRPGAF 95
                  PP                    P  P PP  GGP     ++ +R   G  PG  
Sbjct: 1142 -----GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDG-EPGQP 1195

Query: 96   VSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT-FSPGPASPPRA 154
             SPGP G     +G  G  G+   + +  S  ++GG      P A+      GP  P  A
Sbjct: 1196 GSPGPTGE----NGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGP--A 1249

Query: 155  SPGGRPGSEA----------RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPAR 204
             P G+PG +           +GR GA      P   GPPG  G+  +   K +       
Sbjct: 1250 GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGE------- 1302

Query: 205  GPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGG 264
                PG+ G+  GP    G  +  R  PG  P  S G+ G       +  P A G  G G
Sbjct: 1303 -KGHPGLIGLI-GPPGEQG-EKGDRGLPG--PQGSPGQKG------EMGIPGASGPIGPG 1351

Query: 265  GPPGGGIPACSIGPGLARLAALGGLP 290
            GPPG   PA   GP  A+ A   G P
Sbjct: 1352 GPPGLPGPA---GPKGAKGATGPGGP 1374



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 86/275 (31%), Positives = 104/275 (37%), Gaps = 44/275 (16%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GPR L G +  PA    E  + + G    EG AG                        + 
Sbjct: 270 GPRGLKGEKGEPAVL--EPGMLVEGPPGPEGPAG------------------------LI 303

Query: 66  APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
            PP     P P G P     P RAGL PG+  +PGP G       R GS G  +    A 
Sbjct: 304 GPPGIQGNPGPVGDPGERGPPGRAGL-PGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAA 362

Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
             AQ     + Q   ALR   PGP     R  P G+PGS        +   + P   GP 
Sbjct: 363 QEAQAQAILQ-QARLALRG-PPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP--RGPQ 418

Query: 184 GASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHRWPPGA----SP 236
           G +G   +  R+ +     ARG P  PG+ G  RG   L G+   + HR   GA     P
Sbjct: 419 GLTGPPGKAGRRGRAGADGARGMPGDPGVKG-DRGFDGLPGLPGEKGHRGDTGAQGLPGP 477

Query: 237 SRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
               GE G  GE   R L     P G  G  GPPG
Sbjct: 478 PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPG 512



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 77/279 (27%), Positives = 98/279 (35%), Gaps = 45/279 (16%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-AGAPGSPLYR 63
           GP+   G    P A   + A  +SG++   G  G  G +  R PRGA   +GA G+    
Sbjct: 701 GPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 760

Query: 64  VSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
               PP     P P GP+    P+          PGP G+     G  G  G+       
Sbjct: 761 GPHGPPGERGLPGPQGPNGFPGPKG--------PPGPPGK----DGLPGHPGQ------- 801

Query: 124 LSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
                     R +V    +T  PGP  P    P G     A G +G    R  P   GPP
Sbjct: 802 ----------RGEVGFQGKTGPPGP--PGVVGPQG-----AAGETGPMGERGHPGPPGPP 844

Query: 184 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
           G  G+     ++        +G P P  +    GP  L G   +   P  A      G  
Sbjct: 845 GEQGLPGTAGKE------GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 898

Query: 244 GGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
           G   P      P   G AG GGP G  G P     PG A
Sbjct: 899 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAA 937



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 76/266 (28%), Positives = 94/266 (35%), Gaps = 35/266 (13%)

Query: 23   EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGP-S 81
            +  + + G A   G AG         +G V  G PG    + +     PP PP P GP  
Sbjct: 958  QGPVGLPGPAGPPGVAGEDGD-----KGEV--GDPGQKGTKGNKGEHGPPGPPGPIGPVG 1010

Query: 82   RSERPRAGLRPGAFVSPGPLGRRASCSGRA--GSAGRLRCSAAALSAAQRG-----GPAR 134
            +     A   PGA    G  G +     R   G  G +        + ++G     GP  
Sbjct: 1011 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMG 1070

Query: 135  AQVPPALRTFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVG 189
               PP  R    GPA P     P+  PGG       G  G       P   G PG  G  
Sbjct: 1071 PPGPPGPR----GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1126

Query: 190  SERDRKFQLHQTPARGPPFP-GISG-----MTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
             ER  K +  Q    GPP P G +G        GPV   G       PPG    R    A
Sbjct: 1127 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG----DPGPPGEGGPRGQDGA 1182

Query: 244  GGERPARA-LRRPRAPGRAGGGGPPG 268
             G+R       +P +PG  G  GPPG
Sbjct: 1183 KGDRGEDGEPGQPGSPGPTGENGPPG 1208



 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 78/266 (29%), Positives = 93/266 (34%), Gaps = 32/266 (12%)

Query: 30   GRADEEGAAGAGSKLWRR-----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS--R 82
            G    +GAAG    +  R     P      G PG+     +   P PP  P   GP+  R
Sbjct: 818  GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLR 877

Query: 83   SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALR 142
                  GL PG    PG  G     SG  G AG    S     AA  GGP     PP   
Sbjct: 878  GFPGERGL-PGTAGGPGLKGNEGP-SGPPGPAG----SPGERGAAGSGGPIG---PPG-- 926

Query: 143  TFSPGPASPPRAS-----PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQ 197
               PGP  PP A+     PG +      GR G +    +P   GPPG +G   ++     
Sbjct: 927  --RPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGD 984

Query: 198  LHQTPARGPPF----PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALR 253
              Q   +G       PG  G   GPV   G       P    P    G A G+   R   
Sbjct: 985  PGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGARGPQGHFG-AKGDEGTRGFN 1042

Query: 254  RPRAP-GRAGGGGPPGGGIPACSIGP 278
             P  P G  G  GP G       +GP
Sbjct: 1043 GPPGPIGLQGLPGPSGEKGETGDVGP 1068



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 85/307 (27%), Positives = 107/307 (34%), Gaps = 65/307 (21%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSA-GAPGSPLYR 63
            GP    G    P A   +      G     GA G  G++ +  P G +   G PG    +
Sbjct: 1001 GPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1060

Query: 64   VSAP------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL 117
                      PP PP P  P GP+ ++ P+    PG   + GP G +    G +GS G  
Sbjct: 1061 GETGDVGPMGPPGPPGPRGPAGPNGADGPQGP--PGGVGNLGPPGEKGE-PGESGSPGIQ 1117

Query: 118  RCSAAALSAAQRGGPARAQVPPALRTFSPGPASP-----PRASPG--------GRPGSEA 164
                      +RG    +  P       PGP  P     P+ +PG        G PG   
Sbjct: 1118 GEPGVKGPRGERGEKGESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1175

Query: 165  -RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
             RG+ GA+  R      G PG+ G   E             GPP         GP+   G
Sbjct: 1176 PRGQDGAKGDRGEDGEPGQPGSPGPTGEN------------GPP---------GPLGKRG 1214

Query: 224  VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
                    P  SP  S G  GG+    A   P A G  G  GP G   PA   GP     
Sbjct: 1215 --------PAGSPG-SEGRQGGKG---AKGDPGAIGAPGKTGPVGPAGPAGKPGPD---- 1258

Query: 284  AALGGLP 290
              L GLP
Sbjct: 1259 -GLRGLP 1264



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 77/297 (25%), Positives = 93/297 (31%), Gaps = 69/297 (23%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP+   G Q  P     +      G    +GA G        P G    G  G P     
Sbjct: 527 GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG--------PHG--EKGPQGKP----- 571

Query: 66  APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA-----------SCSGRAGSA 114
             P  P    PPG P +   P      G     GPLG                 G  G  
Sbjct: 572 GLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 631

Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP-RASPGGRPGSEA----RGRSG 169
           G             +G      VP +      GP  P  R  P G PG       +G+ G
Sbjct: 632 GEDGFPGFKGDIGVKGDRGEVGVPGS--RGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLG 689

Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN---- 225
                  P   GP G+ G                  P FPG SG  +G   LSG +    
Sbjct: 690 VPGLPGYPGRQGPKGSLGF-----------------PGFPGASG-EKGARGLSGKSGPRG 731

Query: 226 -------RQHRWPPGAS-PSRSLGEAGGERP-----ARALRRPRAP-GRAGGGGPPG 268
                  R  R P GA+  S + G +GG+ P      R L  P+ P G  G  GPPG
Sbjct: 732 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG 788



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 55/184 (29%), Positives = 66/184 (35%), Gaps = 26/184 (14%)

Query: 12   GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----SAGAPGSPLYRVSAP 67
            G Q    A  +  A+   G+    G AG   K    P G      S G  G P     A 
Sbjct: 1223 GRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK--PGPDGLRGLPGSVGQQGRPGATGQAG 1280

Query: 68   PPAPPPPPP-PG----GPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRLRCS 120
            PP P  PP  PG      ++ E+   GL  G    PG  G +      G  GS G+    
Sbjct: 1281 PPGPVGPPGLPGLRGDAGAKGEKGHPGLI-GLIGPPGEQGEKGDRGLPGPQGSPGQ---- 1335

Query: 121  AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
               +      GP     PP L    PGPA P  A     PG    G  G +  +  P H 
Sbjct: 1336 KGEMGIPGASGPIGPGGPPGL----PGPAGPKGAKGATGPG----GPKGEKGVQGPPGHP 1387

Query: 181  GPPG 184
            GPPG
Sbjct: 1388 GPPG 1391



 Score = 28.5 bits (62), Expect = 7.9
 Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR-- 63
            G R L G Q +P           SG     G  G        P+GA  A  PG P     
Sbjct: 1322 GDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG--PKGAKGATGPGGPKGEKG 1379

Query: 64   VSAPPPAPPPP 74
            V  PP  P PP
Sbjct: 1380 VQGPPGHPGPP 1390


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 93/326 (28%), Positives = 118/326 (36%), Gaps = 74/326 (22%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVS----AGAPGSP 60
            GP    G Q  P    N       G   E G+ G  G    + PRG       +G PG P
Sbjct: 1189 GPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEP 1248

Query: 61   LYRVSAPP--------------------PAPPPPPPPGGP-----SRSERPRAGLRPGAF 95
                  PP                    P  P PP  GGP     ++ +R   G  PG  
Sbjct: 1249 -----GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDG-EPGQP 1302

Query: 96   VSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT-FSPGPASPPRA 154
             SPGP G     +G  G  G+   + +  S  ++GG      P A+      GP  P  A
Sbjct: 1303 GSPGPTGE----NGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGP--A 1356

Query: 155  SPGGRPGSEA----------RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPAR 204
             P G+PG +           +GR GA      P   GPPG  G+  +   K +       
Sbjct: 1357 GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGE------- 1409

Query: 205  GPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGG 264
                PG+ G+  GP    G  +  R  PG  P  S G+ G       +  P A G  G G
Sbjct: 1410 -KGHPGLIGLI-GPPGEQG-EKGDRGLPG--PQGSPGQKG------EMGIPGASGPIGPG 1458

Query: 265  GPPGGGIPACSIGPGLARLAALGGLP 290
            GPPG   PA   GP  A+ A   G P
Sbjct: 1459 GPPGLPGPA---GPKGAKGATGPGGP 1481



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 87/279 (31%), Positives = 106/279 (37%), Gaps = 44/279 (15%)

Query: 2   AISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPL 61
           A + GPR L G +  PA    E  + + G    EG AG                      
Sbjct: 373 AAAHGPRGLKGEKGEPAVL--EPGMLVEGPPGPEGPAG---------------------- 408

Query: 62  YRVSAPPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
             +  PP     P P G P     P RAGL PG+  +PGP G       R GS G  +  
Sbjct: 409 --LIGPPGIQGNPGPVGDPGERGPPGRAGL-PGSDGAPGPPGTSLMLPFRFGSGGGDKGP 465

Query: 121 AAALSAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLH 179
             A   AQ     + Q   ALR   PGP     R  P G+PGS        +   + P  
Sbjct: 466 VVAAQEAQAQAILQ-QARLALRG-PPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP-- 521

Query: 180 HGPPGASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHRWPPGA-- 234
            GP G +G   +  R+ +     ARG P  PG+ G  RG   L G+   + HR   GA  
Sbjct: 522 RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKG-DRGFDGLPGLPGEKGHRGDTGAQG 580

Query: 235 --SPSRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
              P    GE G  GE   R L     P G  G  GPPG
Sbjct: 581 LPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPG 619



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 77/279 (27%), Positives = 98/279 (35%), Gaps = 45/279 (16%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS-AGAPGSPLYR 63
            GP+   G    P A   + A  +SG++   G  G  G +  R PRGA   +GA G+    
Sbjct: 808  GPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 867

Query: 64   VSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
                PP     P P GP+    P+          PGP G+     G  G  G+       
Sbjct: 868  GPHGPPGERGLPGPQGPNGFPGPKG--------PPGPPGK----DGLPGHPGQ------- 908

Query: 124  LSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPP 183
                      R +V    +T  PGP  P    P G     A G +G    R  P   GPP
Sbjct: 909  ----------RGEVGFQGKTGPPGP--PGVVGPQG-----AAGETGPMGERGHPGPPGPP 951

Query: 184  GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
            G  G+     ++        +G P P  +    GP  L G   +   P  A      G  
Sbjct: 952  GEQGLPGTAGKE------GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 1005

Query: 244  GGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
            G   P      P   G AG GGP G  G P     PG A
Sbjct: 1006 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAA 1044



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 76/266 (28%), Positives = 94/266 (35%), Gaps = 35/266 (13%)

Query: 23   EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGP-S 81
            +  + + G A   G AG         +G V  G PG    + +     PP PP P GP  
Sbjct: 1065 QGPVGLPGPAGPPGVAGEDGD-----KGEV--GDPGQKGTKGNKGEHGPPGPPGPIGPVG 1117

Query: 82   RSERPRAGLRPGAFVSPGPLGRRASCSGRA--GSAGRLRCSAAALSAAQRG-----GPAR 134
            +     A   PGA    G  G +     R   G  G +        + ++G     GP  
Sbjct: 1118 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMG 1177

Query: 135  AQVPPALRTFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVG 189
               PP  R    GPA P     P+  PGG       G  G       P   G PG  G  
Sbjct: 1178 PPGPPGPR----GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1233

Query: 190  SERDRKFQLHQTPARGPPFP-GISG-----MTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
             ER  K +  Q    GPP P G +G        GPV   G       PPG    R    A
Sbjct: 1234 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG----DPGPPGEGGPRGQDGA 1289

Query: 244  GGERPARA-LRRPRAPGRAGGGGPPG 268
             G+R       +P +PG  G  GPPG
Sbjct: 1290 KGDRGEDGEPGQPGSPGPTGENGPPG 1315



 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 78/266 (29%), Positives = 93/266 (34%), Gaps = 32/266 (12%)

Query: 30   GRADEEGAAGAGSKLWRR-----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS--R 82
            G    +GAAG    +  R     P      G PG+     +   P PP  P   GP+  R
Sbjct: 925  GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLR 984

Query: 83   SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALR 142
                  GL PG    PG  G     SG  G AG    S     AA  GGP     PP   
Sbjct: 985  GFPGERGL-PGTAGGPGLKGNEGP-SGPPGPAG----SPGERGAAGSGGPIG---PPG-- 1033

Query: 143  TFSPGPASPPRAS-----PGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQ 197
               PGP  PP A+     PG +      GR G +    +P   GPPG +G   ++     
Sbjct: 1034 --RPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGD 1091

Query: 198  LHQTPARGPPF----PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALR 253
              Q   +G       PG  G   GPV   G       P    P    G A G+   R   
Sbjct: 1092 PGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGARGPQGHFG-AKGDEGTRGFN 1149

Query: 254  RPRAP-GRAGGGGPPGGGIPACSIGP 278
             P  P G  G  GP G       +GP
Sbjct: 1150 GPPGPIGLQGLPGPSGEKGETGDVGP 1175



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 85/307 (27%), Positives = 107/307 (34%), Gaps = 65/307 (21%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSA-GAPGSPLYR 63
            GP    G    P A   +      G     GA G  G++ +  P G +   G PG    +
Sbjct: 1108 GPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1167

Query: 64   VSAP------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL 117
                      PP PP P  P GP+ ++ P+    PG   + GP G +    G +GS G  
Sbjct: 1168 GETGDVGPMGPPGPPGPRGPAGPNGADGPQGP--PGGVGNLGPPGEKGE-PGESGSPGIQ 1224

Query: 118  RCSAAALSAAQRGGPARAQVPPALRTFSPGPASP-----PRASPG--------GRPGSEA 164
                      +RG    +  P       PGP  P     P+ +PG        G PG   
Sbjct: 1225 GEPGVKGPRGERGEKGESGQPG--EPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1282

Query: 165  -RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
             RG+ GA+  R      G PG+ G   E             GPP         GP+   G
Sbjct: 1283 PRGQDGAKGDRGEDGEPGQPGSPGPTGEN------------GPP---------GPLGKRG 1321

Query: 224  VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
                    P  SP  S G  GG+    A   P A G  G  GP G   PA   GP     
Sbjct: 1322 --------PAGSPG-SEGRQGGKG---AKGDPGAIGAPGKTGPVGPAGPAGKPGPD---- 1365

Query: 284  AALGGLP 290
              L GLP
Sbjct: 1366 -GLRGLP 1371



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 77/297 (25%), Positives = 93/297 (31%), Gaps = 69/297 (23%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP+   G Q  P     +      G    +GA G        P G    G  G P     
Sbjct: 634 GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG--------PHG--EKGPQGKP----- 678

Query: 66  APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA-----------SCSGRAGSA 114
             P  P    PPG P +   P      G     GPLG                 G  G  
Sbjct: 679 GLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 738

Query: 115 GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPP-RASPGGRPGSEA----RGRSG 169
           G             +G      VP +      GP  P  R  P G PG       +G+ G
Sbjct: 739 GEDGFPGFKGDIGVKGDRGEVGVPGS--RGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLG 796

Query: 170 AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN---- 225
                  P   GP G+ G                  P FPG SG  +G   LSG +    
Sbjct: 797 VPGLPGYPGRQGPKGSLGF-----------------PGFPGASG-EKGARGLSGKSGPRG 838

Query: 226 -------RQHRWPPGAS-PSRSLGEAGGERP-----ARALRRPRAP-GRAGGGGPPG 268
                  R  R P GA+  S + G +GG+ P      R L  P+ P G  G  GPPG
Sbjct: 839 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPG 895



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 55/184 (29%), Positives = 66/184 (35%), Gaps = 26/184 (14%)

Query: 12   GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----SAGAPGSPLYRVSAP 67
            G Q    A  +  A+   G+    G AG   K    P G      S G  G P     A 
Sbjct: 1330 GRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK--PGPDGLRGLPGSVGQQGRPGATGQAG 1387

Query: 68   PPAPPPPPP-PG----GPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRLRCS 120
            PP P  PP  PG      ++ E+   GL  G    PG  G +      G  GS G+    
Sbjct: 1388 PPGPVGPPGLPGLRGDAGAKGEKGHPGLI-GLIGPPGEQGEKGDRGLPGPQGSPGQ---- 1442

Query: 121  AAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH 180
               +      GP     PP L    PGPA P  A     PG    G  G +  +  P H 
Sbjct: 1443 KGEMGIPGASGPIGPGGPPGL----PGPAGPKGAKGATGPG----GPKGEKGVQGPPGHP 1494

Query: 181  GPPG 184
            GPPG
Sbjct: 1495 GPPG 1498



 Score = 28.5 bits (62), Expect = 7.9
 Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR-- 63
            G R L G Q +P           SG     G  G        P+GA  A  PG P     
Sbjct: 1429 GDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG--PKGAKGATGPGGPKGEKG 1486

Query: 64   VSAPPPAPPPP 74
            V  PP  P PP
Sbjct: 1487 VQGPPGHPGPP 1497


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 90/321 (28%), Positives = 108/321 (33%), Gaps = 56/321 (17%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           G   L GL   P          + G   E GA G      + P G    G PG+      
Sbjct: 237 GKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGP-----KGPPGVDGVGVPGA------ 285

Query: 66  APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
           A  P P  P    G   +  P   + P  +  PG  G +    G AG  G L        
Sbjct: 286 AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGD-RGPAGVPGLLGDRGEPGE 344

Query: 126 AAQRG--GPARAQVPPALRTFS--PGPASPP----RASPGGRPG----------SEARGR 167
             + G  GP     PP L   +  PG   PP     A PGG PG          S   G+
Sbjct: 345 DGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGK 404

Query: 168 SGAECARRVPLHHGPPGAS---------------GVGSERDRKFQL---HQTPARGPP-F 208
            G    R +P  HGPPG +               GV     +K  L    Q   RGP   
Sbjct: 405 PGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGI 464

Query: 209 PGISGMTRGPVVLSGVNRQHRWP--PGASPSRSLGEAGGERPARALRRPRAPGRAGGGGP 266
           PG+ G   GP+   G+      P  PG       GE G   P      P +PG  G  GP
Sbjct: 465 PGLQG-PAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGP 523

Query: 267 PG----GGIPACSIGPGLARL 283
           PG     G P      G+A L
Sbjct: 524 PGPPGPPGAPGAFDETGIAGL 544



 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 87/303 (28%), Positives = 101/303 (33%), Gaps = 74/303 (24%)

Query: 54  AGAPGSPLYRVSAPPPAPPPPPPPGGPS-RSE---RPRAGLR------------------ 91
           AG PG      + PP  P    PPG P  R E   R   GLR                  
Sbjct: 114 AGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPG 173

Query: 92  -PGAFVSPGPLGRRASCS--------GRAGSAGRLRCSAAALSAA--QRGGPARAQVPPA 140
            PGA   PGP G +            G  G  G        L  A  Q G P    +P  
Sbjct: 174 KPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGP 233

Query: 141 LRTFSPG----PASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPPGASGVGSERDRK 195
                PG    P +P      G PG    RG  GA   +      GPPG  GVG      
Sbjct: 234 AGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPK------GPPGVDGVGVPGAAG 287

Query: 196 FQLHQTPA--------RGPP---------FPGISGM--TRGPVVLSGVNRQHRWP----- 231
               Q P+        RGPP          PG+ G    RGP  + G+      P     
Sbjct: 288 LPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGE 347

Query: 232 PGASPSRSLGEAGGERPARALRRPRAP----GRAGGGGPPGGGIPACSIGPGLARLAALG 287
           PG    + LG   G   +  L   R P    G AG GGPP  G+P      G + LA   
Sbjct: 348 PGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPP--GVPGIRGDQGPSGLAGKP 405

Query: 288 GLP 290
           G+P
Sbjct: 406 GVP 408



 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 91/318 (28%), Positives = 110/318 (34%), Gaps = 47/318 (14%)

Query: 17  PAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPP 75
           P A          G    +G  G  G +  +   G    G PG+P    +  PP  P P 
Sbjct: 175 PGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPA 234

Query: 76  PPGGPSRSERPRA-------------GLR--PGAFVSPGPLG-RRASCSGRAGSAGRLRC 119
             G P     P A             G R  PGA    GP G       G AG  G    
Sbjct: 235 GLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGP 294

Query: 120 SAAALSAAQRGGPARAQVPPALRTFSPGPASP--PRASPG-----GRPGSEARGRSGAEC 172
           S A      RG P             PGP     P   PG     G PG +  G  G + 
Sbjct: 295 SGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED--GEPGEQG 352

Query: 173 ARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLS---GVNRQH 228
            + +    G PG++G+   R       +    GPP  PGI G  +GP  L+   GV  + 
Sbjct: 353 PQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRG-DQGPSGLAGKPGVPGER 411

Query: 229 -----RWPPGASPSRS----LGEAGGERPARALRR------PRAPGRAGGGGPPGGGIPA 273
                  PPG +  +      G  GG   A AL +      P  PG  G  G PG   PA
Sbjct: 412 GLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPA 471

Query: 274 CSIGP-GLARLAALGGLP 290
             IGP GL  L    GLP
Sbjct: 472 GPIGPQGLPGLKGEPGLP 489



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 69/224 (30%), Positives = 79/224 (35%), Gaps = 57/224 (25%)

Query: 67  PPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSA 126
           PP  P P  PPG P    +P  G +PG    PGP G       R G AG           
Sbjct: 81  PPGKPGPRGPPGPPGFPGKPGMG-KPGLHGQPGPAGPPGF--SRMGKAG----------- 126

Query: 127 AQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEAR-GRSGAECARRVPLHHGPPGA 185
                      PP L    PG   PP     G+PG     G  G +  R  P   G PG 
Sbjct: 127 -----------PPGL----PGKVGPP-----GQPGLRGEPGIRGDQGLRGPPGPPGLPGP 166

Query: 186 SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL-GEAG 244
           SG+                 P  PG  G+  GP    G     +  PG    R L G+ G
Sbjct: 167 SGITI---------------PGKPGAQGVP-GPPGFQG-EPGPQGEPGPPGDRGLKGDNG 209

Query: 245 GERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGG 288
             +P      P APG+ G  GPPG   PA    PGL  L    G
Sbjct: 210 VGQPGL----PGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPG 249



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 63/216 (29%), Positives = 71/216 (32%), Gaps = 39/216 (18%)

Query: 55  GAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA-SCSGRAGS 113
           G PG P  R    PP  P  P  G            +PG    PGP G    S  G+AG 
Sbjct: 80  GPPGKPGPRGPPGPPGFPGKPGMG------------KPGLHGQPGPAGPPGFSRMGKAGP 127

Query: 114 AGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECA 173
            G             RG P   +    LR    GP  PP     G  G    G+ GA+  
Sbjct: 128 PGLPGKVGPPGQPGLRGEPG-IRGDQGLR----GPPGPPGLP--GPSGITIPGKPGAQGV 180

Query: 174 RRVPLHHGPPGASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPP 232
              P   G PG  G  G   DR  +        P  PG  G    P            PP
Sbjct: 181 PGPPGFQGEPGPQGEPGPPGDRGLK-GDNGVGQPGLPGAPGQGGAP-----------GPP 228

Query: 233 GASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
           G      LG+ G +        P APG  G  GPPG
Sbjct: 229 GLPGPAGLGKPGLD------GLPGAPGDKGESGPPG 258



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 36/108 (33%), Positives = 41/108 (37%), Gaps = 28/108 (25%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP+ L GL+  P            GRA E G AG        P G    G PGSP   ++
Sbjct: 475 GPQGLPGLKGEPGLPGPPG----EGRAGEPGTAG--------PTGP--PGVPGSP--GIT 518

Query: 66  APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGS 113
            PP  P PP PPG P            GAF   G  G      G  G+
Sbjct: 519 GPPGPPGPPGPPGAP------------GAFDETGIAGLHLPNGGVEGA 554


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 91/316 (28%), Positives = 111/316 (35%), Gaps = 69/316 (21%)

Query: 15  RTPAAYANEAAL----AISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA 70
           RTP   A  A       +SG     GAAGAG         A + GAPG+       PPPA
Sbjct: 46  RTPEVRAAAAGALGNHVVSG--SPAGAAGAGP-------AAPAEGAPGA----APEPPPA 92

Query: 71  PPPPPPPGGPSR----SER----PRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAA 122
               P  GGP R    S R    P     P A + P P G   SC+    +A     + A
Sbjct: 93  GRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAA-----AVA 147

Query: 123 ALSAAQRGGPARAQVPPALRT-FSPGPASPPRASPGGRPGSEARGRSGAE----CARRVP 177
           A       GPA+   P AL     PGP   P   PG  PG  A G   A+     A  + 
Sbjct: 148 AGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPA-GPGAAQTLNGSAALLN 206

Query: 178 LHH-GPPGASGVGSERDRKFQLHQTPARG-----PPFPGISGMTR--------------- 216
            HH   P  S V +       L +  A G     PPF G +                   
Sbjct: 207 SHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAP 266

Query: 217 ---------GPVVLSGVNRQHRWPPGASPS---RSLGEAGGERPARALRRPRAPGRAGGG 264
                     P  L+        PP A+P+    +  + GG   A     P A G AG  
Sbjct: 267 AAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVS 326

Query: 265 GPPGGGIPACSIGPGL 280
           G PG G  A +  PG+
Sbjct: 327 GQPGPGAAAAAPAPGV 342



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 39/128 (30%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 50  GAVSAGAPGSPLYRVSAPPPAPP--PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASC 107
           GA +  AP +P    +  P AP   PPPPP  P+   RP     P    +  P     + 
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG--HPAGPPTAAPAVPPPAA 302

Query: 108 SGRAGSAGRLRCSAAALSAAQRGGPA--RAQVPPALRTFSPGPA----SPPRASPGGRPG 161
           +   GSAG     AA   A   GGPA    Q  P     +P P     SP R      P 
Sbjct: 303 AQNGGSAG-----AAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPA 357

Query: 162 SEARGRSG 169
           ++    SG
Sbjct: 358 AQTLAASG 365



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 55/199 (27%), Positives = 69/199 (34%), Gaps = 39/199 (19%)

Query: 110 RAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSG 169
           RA +AG L     + S A   G      P A    +PG A  P  +   RPG     R G
Sbjct: 51  RAAAAGALGNHVVSGSPAGAAGAG----PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPG 106

Query: 170 AECARR--VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
               RR  VP    PP A                    PP  G +G    PV  +     
Sbjct: 107 PPSPRRPLVPAGPAPPAAK-----------------LRPPPEGSAGSC-APVPAAAAVAA 148

Query: 228 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALG 287
              P  A P++  G A     A A R    PG   G GP          GPG  + A  G
Sbjct: 149 GPEPAPAGPAKPAGPA-----ALAARAGPGPGPGPGPGP----------GPGPGKPAGPG 193

Query: 288 GLPSILESSRLLPSPRSSA 306
              ++  S+ LL S  ++A
Sbjct: 194 AAQTLNGSAALLNSHHAAA 212



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 50/191 (26%), Positives = 66/191 (34%), Gaps = 24/191 (12%)

Query: 3   ISGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
           ++ GP  L  L +  A           G A     A         P    +A  P  P  
Sbjct: 218 VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAP 277

Query: 63  RVSAPPPAPP--PP------PPP--------GGPSRSERPRAGLRPGAFVSPGPLGRRAS 106
              A PP  P  PP      PPP         G + +  P AG   G    PGP    A+
Sbjct: 278 ATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAA 337

Query: 107 CSGRAGSAGRLRCSAAALSAAQ---RGGPARAQ----VPPALRTFSPGPASPPRASPGGR 159
            +    +    R   AA  AAQ     GPA       + P ++   P PA+ P  +P G 
Sbjct: 338 PAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAP-GT 396

Query: 160 PGSEARGRSGA 170
           P    +G +GA
Sbjct: 397 PTGLPKGAAGA 407


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 85/281 (30%), Positives = 106/281 (37%), Gaps = 49/281 (17%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
            GP+   G    P A   + A  ++G+    G  G        PRG+  A  P G P  + 
Sbjct: 862  GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-----PRGSRGARGPTGKPGPKG 916

Query: 65   SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
            ++    PP PP   GP   + P  G  PG    PGP G+     G  G  G         
Sbjct: 917  TSGGDGPPGPPGERGPQGPQGP-VGF-PGPKGPPGPPGK----DGLPGHPG--------- 961

Query: 125  SAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPP 183
               QRG            T   G   PP   PGG  G +   G +G    R  P   GPP
Sbjct: 962  ---QRG-----------ETGFQGKTGPP--GPGGVVGPQGPTGETGPIGERGHPGPPGPP 1005

Query: 184  GASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASPSRSL-G 241
            G  G+     ++       A+G P P GISG   GP  L G   + R  PGA  +  L G
Sbjct: 1006 GEQGLPGAAGKE------GAKGDPGPQGISGKD-GPAGLRGFPGE-RGLPGAQGAPGLKG 1057

Query: 242  EAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
              G + P   +  P   G AG  GP G  G P     PG A
Sbjct: 1058 GEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPA 1098



 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 82/294 (27%), Positives = 107/294 (36%), Gaps = 70/294 (23%)

Query: 30   GRADEEGAAGAGSKLWRRPRGAVSA-GAPGSPLYRVS------APPPAPPPPPPPGGPSR 82
            G+  +EGA G     +  P G +   G PG P  +          PP PP P  P GP+ 
Sbjct: 1192 GQKGDEGARG-----FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1246

Query: 83   SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPARAQV 137
            ++ P+    PG+  S G +G +    G AG+ G    +       +RG     GP  A  
Sbjct: 1247 ADGPQGP--PGSVGSVGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAG 1303

Query: 138  PPALR--------TFSPGPAS-PPRASPGGRPGSEAR-------------------GRSG 169
            PP  +          +PGP   P    P G PG   +                   G SG
Sbjct: 1304 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1363

Query: 170  AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
                   P   GPPGA+G    +  K    +  A GPP     G T GPV   G   +  
Sbjct: 1364 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP-----GKT-GPVGPQGPAGK-- 1415

Query: 230  WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG----GGIPACSIGPG 279
              PG    R +    GE+          PG AG  GPPG     G+P     PG
Sbjct: 1416 --PGPEGLRGIPGPVGEQ--------GLPGAAGQDGPPGPMGPPGLPGLKGDPG 1459



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 96/301 (31%), Positives = 114/301 (37%), Gaps = 47/301 (15%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP   A    T  +     A    G+  E      G  +   P  A  AG  G       
Sbjct: 414 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMG------- 466

Query: 66  APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
            PP    P  PPG P     P R GL PGA   PGP G       R G  G    + +A 
Sbjct: 467 -PPGLQGPTGPPGDPGDRGPPGRPGL-PGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 524

Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSE-ARGRSGAECARRVPLHHGP 182
            A  +    +A++  ALR   PGP     R  P G PGS  A+G SG    +      GP
Sbjct: 525 EAQAQAILQQARI--ALRG-PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGP 581

Query: 183 PGASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHR---------W 230
           PG +G   +R R         RG P  PG  G  RG   L G+  ++ HR          
Sbjct: 582 PGPTGKPGKRGRP---GADGGRGMPGEPGAKG-DRGFDGLPGLPGDKGHRGERGPQGPPG 637

Query: 231 PPGASPSRSL-GEAG-----GERPARALRRPRA-------PGRAGGGGPPGGGIPACSIG 277
           PPG    R   GE G     GE   R L  PR        PG AG  GPPG   P  ++G
Sbjct: 638 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG---PKGNMG 694

Query: 278 P 278
           P
Sbjct: 695 P 695



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 79/275 (28%), Positives = 96/275 (34%), Gaps = 40/275 (14%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            G R L G Q  P     E      G     G  G+          A   G PG P     
Sbjct: 1042 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGT-------AGPIGLPGRP----- 1089

Query: 66   APPPAPPPPPPPGGPSRSERP-----RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
              P  PP P    G    + P     R G++ G    PGP G   S  G  G  G +   
Sbjct: 1090 -GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ-GPVGLPGPAGPAGS-PGEDGDKGEIGEP 1146

Query: 121  AAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPG-GRPGSEAR----GRSGAECA 173
                S   +G  GP     PP L+    GP   P  + G G PG   +    G+ G E A
Sbjct: 1147 GQKGSKGDKGENGPPG---PPGLQ----GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGA 1199

Query: 174  RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
            R  P   GP G  G+      K +       GPP P      +GP    G     + PPG
Sbjct: 1200 RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG----PQGPPG 1255

Query: 234  ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
            +    S+G  G +        P  PG AG GGP G
Sbjct: 1256 S--VGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1288



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 81/298 (27%), Positives = 109/298 (36%), Gaps = 54/298 (18%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
            GP    G Q  P +  +   +   G   E G  G        P G    G P G    + 
Sbjct: 1243 GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG--------PPGEAGVGGPKGERGEKG 1294

Query: 65   SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRRASCSGRAGSAGRLRCSAAA 123
             A PP    PP   GP   + P+    P  F   PGP G     +G+ G  G        
Sbjct: 1295 EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP-AGQDGVGG-------- 1345

Query: 124  LSAAQRGGPARAQVP-PALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGP 182
                + G P +   P P+     PGP  P +  P G  G+E  GR G + A+      GP
Sbjct: 1346 -DKGEDGDPGQPGPPGPSGEAGPPGP--PGKRGPPGAAGAE--GRQGEKGAKGEAGAEGP 1400

Query: 183  PGASGVGSERDRKFQLHQTPARGPP-------FPGISGMT-----RGPVVLSGVNRQHRW 230
            PG +G    +    +      RG P        PG +G        GP  L G+    + 
Sbjct: 1401 PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGL----KG 1456

Query: 231  PPGASPSRS-------LGEAG--GERPARALRRPR-APGRAGGGGPPGGGIPACSIGP 278
             PG+   +        +G  G  GE+  R L   + +PG  G GG PG   PA  +GP
Sbjct: 1457 DPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPG---PAGPLGP 1511



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 72/256 (28%), Positives = 93/256 (36%), Gaps = 31/256 (12%)

Query: 71   PPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRCSAAALSAAQ 128
            P   P P G +  E+ + G+ PG    PG  G + S    G  G+ G       A     
Sbjct: 833  PTGDPGPSGQA-GEKGKLGV-PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGP 890

Query: 129  RG--GPARAQVPPALR--TFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLH 179
            RG  GP   +     R  T  PGP        P   PG R     +G  G    +  P  
Sbjct: 891  RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP-- 948

Query: 180  HGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPS 237
             GPPG  G+     ++ +       GPP PG     +GP   +G    R H  PPG    
Sbjct: 949  -GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE 1007

Query: 238  RSLGEAGGERPARALRRPRAPGRAGGGGPPG-------GGIPACSIGPGLARLAALGGLP 290
            + L  A G+  A+    P   G +G  GP G        G+P     PGL       G P
Sbjct: 1008 QGLPGAAGKEGAKG--DPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP 1065

Query: 291  SILESSRLLPSPRSSA 306
              + S    P  R SA
Sbjct: 1066 GPVGS----PGERGSA 1077



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 68/234 (29%), Positives = 75/234 (32%), Gaps = 55/234 (23%)

Query: 55   GAPGSPLYRVSAPPPAPP----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
            G PG P     A PP PP    PP   G   R     A    GA   PG  G      G 
Sbjct: 1354 GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGP-VGPQGP 1412

Query: 111  AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEAR--- 165
            AG  G            ++G P  A      +   PGP  PP   PG  G PGS+     
Sbjct: 1413 AGKPGPEGLRGIPGPVGEQGLPGAAG-----QDGPPGPMGPP-GLPGLKGDPGSKGEKGH 1466

Query: 166  ----------GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT 215
                      G  G +  R +P   G PGA G G               G P P      
Sbjct: 1467 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG---------------GIPGPA----- 1506

Query: 216  RGPVVLSGVNRQHRWPPGA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
             GP+   G       PPG   P    G  G   PA        PG  G  GPPG
Sbjct: 1507 -GPLGPPG-------PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPG 1552



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 76/304 (25%), Positives = 98/304 (32%), Gaps = 80/304 (26%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GPR L G + TP A        + G    +G  G               G PG P  + +
Sbjct: 661 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP-------------QGEPGPPGQQGN 707

Query: 66  APPPAPPPPPPPGGPSRSERPR-----AGLRPGAFVSPGPLGRRASCS------------ 108
             P   P P  P GP   + P+     AGL PGA   PG  G+                 
Sbjct: 708 PGPQGLPGPQGPIGPPGEKGPQGKPGLAGL-PGADGPPGHPGKEGQSGEKGALGPPGPQG 766

Query: 109 --------GRAGSAGRLRCSAAALSAAQRGGPA----------RAQVPPALRTFSPGPAS 150
                   G  G+ G      +     + G P           R +V         GP  
Sbjct: 767 PIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEG 826

Query: 151 PP-RASPGGRPGSEA----RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG 205
           P  RA P G PG       +G+ G       P   GP G++G                  
Sbjct: 827 PKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF----------------- 869

Query: 206 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA-LRRPRAPGRAGGG 264
           P FPG +G  +G   ++G        PG    R      G R AR    +P   G +GG 
Sbjct: 870 PGFPGANG-EKGARGVAG-------KPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD 921

Query: 265 GPPG 268
           GPPG
Sbjct: 922 GPPG 925



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 81/284 (28%), Positives = 102/284 (35%), Gaps = 37/284 (13%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
           GP+   G+Q  P            G     G  G  G+K  R   G    G PG   +R 
Sbjct: 571 GPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL--PGLPGDKGHRG 628

Query: 65  SAPPPAPPPPPPPGGPSRSERPRAGLR--PGAFVSPGPLGRRASCSGRAGSAGRLRCSAA 122
              P  PP PP   G  R E    G R  PG     G LG R    G  G+ G+   +  
Sbjct: 629 ERGPQGPPGPPGDDG-MRGEDGEIGPRGLPGEAGPRGLLGPR----GTPGAPGQPGMAGV 683

Query: 123 ALSAAQRG--GPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLH 179
                 +G  GP     PP  +  +PGP   P    P G PG   +G  G      +P  
Sbjct: 684 DGPPGPKGNMGPQGEPGPPGQQG-NPGPQGLPGPQGPIGPPGE--KGPQGKPGLAGLPGA 740

Query: 180 HGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-----TRGPVVLSGVNRQ 227
            GPPG  G      ++ Q  +  A GPP       +PG  G+      RG     G   +
Sbjct: 741 DGPPGHPG------KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE 794

Query: 228 HRWPPGASPSRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
             +P         G+ G  G+   R    P  P GRAG  G PG
Sbjct: 795 DGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG 838


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 85/281 (30%), Positives = 106/281 (37%), Gaps = 49/281 (17%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
            GP+   G    P A   + A  ++G+    G  G        PRG+  A  P G P  + 
Sbjct: 811  GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-----PRGSRGARGPTGKPGPKG 865

Query: 65   SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
            ++    PP PP   GP   + P  G  PG    PGP G+     G  G  G         
Sbjct: 866  TSGGDGPPGPPGERGPQGPQGP-VGF-PGPKGPPGPPGK----DGLPGHPG--------- 910

Query: 125  SAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPP 183
               QRG            T   G   PP   PGG  G +   G +G    R  P   GPP
Sbjct: 911  ---QRG-----------ETGFQGKTGPP--GPGGVVGPQGPTGETGPIGERGHPGPPGPP 954

Query: 184  GASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASPSRSL-G 241
            G  G+     ++       A+G P P GISG   GP  L G   + R  PGA  +  L G
Sbjct: 955  GEQGLPGAAGKE------GAKGDPGPQGISGKD-GPAGLRGFPGE-RGLPGAQGAPGLKG 1006

Query: 242  EAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
              G + P   +  P   G AG  GP G  G P     PG A
Sbjct: 1007 GEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPA 1047



 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 82/294 (27%), Positives = 107/294 (36%), Gaps = 70/294 (23%)

Query: 30   GRADEEGAAGAGSKLWRRPRGAVSA-GAPGSPLYRVS------APPPAPPPPPPPGGPSR 82
            G+  +EGA G     +  P G +   G PG P  +          PP PP P  P GP+ 
Sbjct: 1141 GQKGDEGARG-----FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1195

Query: 83   SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPARAQV 137
            ++ P+    PG+  S G +G +    G AG+ G    +       +RG     GP  A  
Sbjct: 1196 ADGPQGP--PGSVGSVGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAG 1252

Query: 138  PPALR--------TFSPGPAS-PPRASPGGRPGSEAR-------------------GRSG 169
            PP  +          +PGP   P    P G PG   +                   G SG
Sbjct: 1253 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1312

Query: 170  AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
                   P   GPPGA+G    +  K    +  A GPP     G T GPV   G   +  
Sbjct: 1313 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP-----GKT-GPVGPQGPAGK-- 1364

Query: 230  WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG----GGIPACSIGPG 279
              PG    R +    GE+          PG AG  GPPG     G+P     PG
Sbjct: 1365 --PGPEGLRGIPGPVGEQ--------GLPGAAGQDGPPGPMGPPGLPGLKGDPG 1408



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 96/301 (31%), Positives = 114/301 (37%), Gaps = 47/301 (15%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP   A    T  +     A    G+  E      G  +   P  A  AG  G       
Sbjct: 363 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMG------- 415

Query: 66  APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
            PP    P  PPG P     P R GL PGA   PGP G       R G  G    + +A 
Sbjct: 416 -PPGLQGPTGPPGDPGDRGPPGRPGL-PGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 473

Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSE-ARGRSGAECARRVPLHHGP 182
            A  +    +A++  ALR   PGP     R  P G PGS  A+G SG    +      GP
Sbjct: 474 EAQAQAILQQARI--ALRG-PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGP 530

Query: 183 PGASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHR---------W 230
           PG +G   +R R         RG P  PG  G  RG   L G+  ++ HR          
Sbjct: 531 PGPTGKPGKRGRP---GADGGRGMPGEPGAKG-DRGFDGLPGLPGDKGHRGERGPQGPPG 586

Query: 231 PPGASPSRSL-GEAG-----GERPARALRRPRA-------PGRAGGGGPPGGGIPACSIG 277
           PPG    R   GE G     GE   R L  PR        PG AG  GPPG   P  ++G
Sbjct: 587 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG---PKGNMG 643

Query: 278 P 278
           P
Sbjct: 644 P 644



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 79/275 (28%), Positives = 96/275 (34%), Gaps = 40/275 (14%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            G R L G Q  P     E      G     G  G+          A   G PG P     
Sbjct: 991  GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGT-------AGPIGLPGRP----- 1038

Query: 66   APPPAPPPPPPPGGPSRSERP-----RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
              P  PP P    G    + P     R G++ G    PGP G   S  G  G  G +   
Sbjct: 1039 -GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ-GPVGLPGPAGPAGS-PGEDGDKGEIGEP 1095

Query: 121  AAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPG-GRPGSEAR----GRSGAECA 173
                S   +G  GP     PP L+    GP   P  + G G PG   +    G+ G E A
Sbjct: 1096 GQKGSKGDKGENGPPG---PPGLQ----GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGA 1148

Query: 174  RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
            R  P   GP G  G+      K +       GPP P      +GP    G     + PPG
Sbjct: 1149 RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG----PQGPPG 1204

Query: 234  ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
            +    S+G  G +        P  PG AG GGP G
Sbjct: 1205 S--VGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1237



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 81/298 (27%), Positives = 109/298 (36%), Gaps = 54/298 (18%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
            GP    G Q  P +  +   +   G   E G  G        P G    G P G    + 
Sbjct: 1192 GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG--------PPGEAGVGGPKGERGEKG 1243

Query: 65   SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRRASCSGRAGSAGRLRCSAAA 123
             A PP    PP   GP   + P+    P  F   PGP G     +G+ G  G        
Sbjct: 1244 EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP-AGQDGVGG-------- 1294

Query: 124  LSAAQRGGPARAQVP-PALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGP 182
                + G P +   P P+     PGP  P +  P G  G+E  GR G + A+      GP
Sbjct: 1295 -DKGEDGDPGQPGPPGPSGEAGPPGP--PGKRGPPGAAGAE--GRQGEKGAKGEAGAEGP 1349

Query: 183  PGASGVGSERDRKFQLHQTPARGPP-------FPGISGMT-----RGPVVLSGVNRQHRW 230
            PG +G    +    +      RG P        PG +G        GP  L G+    + 
Sbjct: 1350 PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGL----KG 1405

Query: 231  PPGASPSRS-------LGEAG--GERPARALRRPR-APGRAGGGGPPGGGIPACSIGP 278
             PG+   +        +G  G  GE+  R L   + +PG  G GG PG   PA  +GP
Sbjct: 1406 DPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPG---PAGPLGP 1460



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 72/256 (28%), Positives = 93/256 (36%), Gaps = 31/256 (12%)

Query: 71   PPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRCSAAALSAAQ 128
            P   P P G +  E+ + G+ PG    PG  G + S    G  G+ G       A     
Sbjct: 782  PTGDPGPSGQA-GEKGKLGV-PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGP 839

Query: 129  RG--GPARAQVPPALR--TFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLH 179
            RG  GP   +     R  T  PGP        P   PG R     +G  G    +  P  
Sbjct: 840  RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP-- 897

Query: 180  HGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPS 237
             GPPG  G+     ++ +       GPP PG     +GP   +G    R H  PPG    
Sbjct: 898  -GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE 956

Query: 238  RSLGEAGGERPARALRRPRAPGRAGGGGPPG-------GGIPACSIGPGLARLAALGGLP 290
            + L  A G+  A+    P   G +G  GP G        G+P     PGL       G P
Sbjct: 957  QGLPGAAGKEGAKG--DPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP 1014

Query: 291  SILESSRLLPSPRSSA 306
              + S    P  R SA
Sbjct: 1015 GPVGS----PGERGSA 1026



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 68/234 (29%), Positives = 75/234 (32%), Gaps = 55/234 (23%)

Query: 55   GAPGSPLYRVSAPPPAPP----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
            G PG P     A PP PP    PP   G   R     A    GA   PG  G      G 
Sbjct: 1303 GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGP-VGPQGP 1361

Query: 111  AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEAR--- 165
            AG  G            ++G P  A      +   PGP  PP   PG  G PGS+     
Sbjct: 1362 AGKPGPEGLRGIPGPVGEQGLPGAAG-----QDGPPGPMGPP-GLPGLKGDPGSKGEKGH 1415

Query: 166  ----------GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT 215
                      G  G +  R +P   G PGA G G               G P P      
Sbjct: 1416 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG---------------GIPGPA----- 1455

Query: 216  RGPVVLSGVNRQHRWPPGA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
             GP+   G       PPG   P    G  G   PA        PG  G  GPPG
Sbjct: 1456 -GPLGPPG-------PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPG 1501



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 76/304 (25%), Positives = 98/304 (32%), Gaps = 80/304 (26%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GPR L G + TP A        + G    +G  G               G PG P  + +
Sbjct: 610 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP-------------QGEPGPPGQQGN 656

Query: 66  APPPAPPPPPPPGGPSRSERPR-----AGLRPGAFVSPGPLGRRASCS------------ 108
             P   P P  P GP   + P+     AGL PGA   PG  G+                 
Sbjct: 657 PGPQGLPGPQGPIGPPGEKGPQGKPGLAGL-PGADGPPGHPGKEGQSGEKGALGPPGPQG 715

Query: 109 --------GRAGSAGRLRCSAAALSAAQRGGPA----------RAQVPPALRTFSPGPAS 150
                   G  G+ G      +     + G P           R +V         GP  
Sbjct: 716 PIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEG 775

Query: 151 PP-RASPGGRPGSEA----RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG 205
           P  RA P G PG       +G+ G       P   GP G++G                  
Sbjct: 776 PKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF----------------- 818

Query: 206 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA-LRRPRAPGRAGGG 264
           P FPG +G  +G   ++G        PG    R      G R AR    +P   G +GG 
Sbjct: 819 PGFPGANG-EKGARGVAG-------KPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD 870

Query: 265 GPPG 268
           GPPG
Sbjct: 871 GPPG 874



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 81/284 (28%), Positives = 102/284 (35%), Gaps = 37/284 (13%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
           GP+   G+Q  P            G     G  G  G+K  R   G    G PG   +R 
Sbjct: 520 GPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL--PGLPGDKGHRG 577

Query: 65  SAPPPAPPPPPPPGGPSRSERPRAGLR--PGAFVSPGPLGRRASCSGRAGSAGRLRCSAA 122
              P  PP PP   G  R E    G R  PG     G LG R    G  G+ G+   +  
Sbjct: 578 ERGPQGPPGPPGDDG-MRGEDGEIGPRGLPGEAGPRGLLGPR----GTPGAPGQPGMAGV 632

Query: 123 ALSAAQRG--GPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLH 179
                 +G  GP     PP  +  +PGP   P    P G PG   +G  G      +P  
Sbjct: 633 DGPPGPKGNMGPQGEPGPPGQQG-NPGPQGLPGPQGPIGPPGE--KGPQGKPGLAGLPGA 689

Query: 180 HGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-----TRGPVVLSGVNRQ 227
            GPPG  G      ++ Q  +  A GPP       +PG  G+      RG     G   +
Sbjct: 690 DGPPGHPG------KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE 743

Query: 228 HRWPPGASPSRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
             +P         G+ G  G+   R    P  P GRAG  G PG
Sbjct: 744 DGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG 787


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 85/281 (30%), Positives = 106/281 (37%), Gaps = 49/281 (17%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
            GP+   G    P A   + A  ++G+    G  G        PRG+  A  P G P  + 
Sbjct: 850  GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-----PRGSRGARGPTGKPGPKG 904

Query: 65   SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
            ++    PP PP   GP   + P  G  PG    PGP G+     G  G  G         
Sbjct: 905  TSGGDGPPGPPGERGPQGPQGP-VGF-PGPKGPPGPPGK----DGLPGHPG--------- 949

Query: 125  SAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPP 183
               QRG            T   G   PP   PGG  G +   G +G    R  P   GPP
Sbjct: 950  ---QRG-----------ETGFQGKTGPP--GPGGVVGPQGPTGETGPIGERGHPGPPGPP 993

Query: 184  GASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASPSRSL-G 241
            G  G+     ++       A+G P P GISG   GP  L G   + R  PGA  +  L G
Sbjct: 994  GEQGLPGAAGKE------GAKGDPGPQGISGKD-GPAGLRGFPGE-RGLPGAQGAPGLKG 1045

Query: 242  EAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLA 281
              G + P   +  P   G AG  GP G  G P     PG A
Sbjct: 1046 GEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPA 1086



 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 82/294 (27%), Positives = 107/294 (36%), Gaps = 70/294 (23%)

Query: 30   GRADEEGAAGAGSKLWRRPRGAVSA-GAPGSPLYRVS------APPPAPPPPPPPGGPSR 82
            G+  +EGA G     +  P G +   G PG P  +          PP PP P  P GP+ 
Sbjct: 1180 GQKGDEGARG-----FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1234

Query: 83   SERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPARAQV 137
            ++ P+    PG+  S G +G +    G AG+ G    +       +RG     GP  A  
Sbjct: 1235 ADGPQGP--PGSVGSVGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAG 1291

Query: 138  PPALR--------TFSPGPAS-PPRASPGGRPGSEAR-------------------GRSG 169
            PP  +          +PGP   P    P G PG   +                   G SG
Sbjct: 1292 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1351

Query: 170  AECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 229
                   P   GPPGA+G    +  K    +  A GPP     G T GPV   G   +  
Sbjct: 1352 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP-----GKT-GPVGPQGPAGK-- 1403

Query: 230  WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG----GGIPACSIGPG 279
              PG    R +    GE+          PG AG  GPPG     G+P     PG
Sbjct: 1404 --PGPEGLRGIPGPVGEQ--------GLPGAAGQDGPPGPMGPPGLPGLKGDPG 1447



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 96/301 (31%), Positives = 114/301 (37%), Gaps = 47/301 (15%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP   A    T  +     A    G+  E      G  +   P  A  AG  G       
Sbjct: 402 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMG------- 454

Query: 66  APPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
            PP    P  PPG P     P R GL PGA   PGP G       R G  G    + +A 
Sbjct: 455 -PPGLQGPTGPPGDPGDRGPPGRPGL-PGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 512

Query: 125 SAAQRGGPARAQVPPALRTFSPGPAS-PPRASPGGRPGSE-ARGRSGAECARRVPLHHGP 182
            A  +    +A++  ALR   PGP     R  P G PGS  A+G SG    +      GP
Sbjct: 513 EAQAQAILQQARI--ALRG-PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGP 569

Query: 183 PGASGVGSERDRKFQLHQTPARG-PPFPGISGMTRGPVVLSGV--NRQHR---------W 230
           PG +G   +R R         RG P  PG  G  RG   L G+  ++ HR          
Sbjct: 570 PGPTGKPGKRGRP---GADGGRGMPGEPGAKG-DRGFDGLPGLPGDKGHRGERGPQGPPG 625

Query: 231 PPGASPSRSL-GEAG-----GERPARALRRPRA-------PGRAGGGGPPGGGIPACSIG 277
           PPG    R   GE G     GE   R L  PR        PG AG  GPPG   P  ++G
Sbjct: 626 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG---PKGNMG 682

Query: 278 P 278
           P
Sbjct: 683 P 683



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 79/275 (28%), Positives = 96/275 (34%), Gaps = 40/275 (14%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            G R L G Q  P     E      G     G  G+          A   G PG P     
Sbjct: 1030 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGT-------AGPIGLPGRP----- 1077

Query: 66   APPPAPPPPPPPGGPSRSERP-----RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
              P  PP P    G    + P     R G++ G    PGP G   S  G  G  G +   
Sbjct: 1078 -GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ-GPVGLPGPAGPAGS-PGEDGDKGEIGEP 1134

Query: 121  AAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPG-GRPGSEAR----GRSGAECA 173
                S   +G  GP     PP L+    GP   P  + G G PG   +    G+ G E A
Sbjct: 1135 GQKGSKGDKGENGPPG---PPGLQ----GPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGA 1187

Query: 174  RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 233
            R  P   GP G  G+      K +       GPP P      +GP    G     + PPG
Sbjct: 1188 RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG----PQGPPG 1243

Query: 234  ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
            +    S+G  G +        P  PG AG GGP G
Sbjct: 1244 S--VGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1276



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 81/298 (27%), Positives = 109/298 (36%), Gaps = 54/298 (18%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAP-GSPLYRV 64
            GP    G Q  P +  +   +   G   E G  G        P G    G P G    + 
Sbjct: 1231 GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG--------PPGEAGVGGPKGERGEKG 1282

Query: 65   SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRRASCSGRAGSAGRLRCSAAA 123
             A PP    PP   GP   + P+    P  F   PGP G     +G+ G  G        
Sbjct: 1283 EAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP-AGQDGVGG-------- 1333

Query: 124  LSAAQRGGPARAQVP-PALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGP 182
                + G P +   P P+     PGP  P +  P G  G+E  GR G + A+      GP
Sbjct: 1334 -DKGEDGDPGQPGPPGPSGEAGPPGP--PGKRGPPGAAGAE--GRQGEKGAKGEAGAEGP 1388

Query: 183  PGASGVGSERDRKFQLHQTPARGPP-------FPGISGMT-----RGPVVLSGVNRQHRW 230
            PG +G    +    +      RG P        PG +G        GP  L G+    + 
Sbjct: 1389 PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGL----KG 1444

Query: 231  PPGASPSRS-------LGEAG--GERPARALRRPR-APGRAGGGGPPGGGIPACSIGP 278
             PG+   +        +G  G  GE+  R L   + +PG  G GG PG   PA  +GP
Sbjct: 1445 DPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPG---PAGPLGP 1499



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 72/256 (28%), Positives = 93/256 (36%), Gaps = 31/256 (12%)

Query: 71   PPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS--GRAGSAGRLRCSAAALSAAQ 128
            P   P P G +  E+ + G+ PG    PG  G + S    G  G+ G       A     
Sbjct: 821  PTGDPGPSGQA-GEKGKLGV-PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGP 878

Query: 129  RG--GPARAQVPPALR--TFSPGPASP-----PRASPGGRPGSEARGRSGAECARRVPLH 179
            RG  GP   +     R  T  PGP        P   PG R     +G  G    +  P  
Sbjct: 879  RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP-- 936

Query: 180  HGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPS 237
             GPPG  G+     ++ +       GPP PG     +GP   +G    R H  PPG    
Sbjct: 937  -GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE 995

Query: 238  RSLGEAGGERPARALRRPRAPGRAGGGGPPG-------GGIPACSIGPGLARLAALGGLP 290
            + L  A G+  A+    P   G +G  GP G        G+P     PGL       G P
Sbjct: 996  QGLPGAAGKEGAKG--DPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP 1053

Query: 291  SILESSRLLPSPRSSA 306
              + S    P  R SA
Sbjct: 1054 GPVGS----PGERGSA 1065



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 68/234 (29%), Positives = 75/234 (32%), Gaps = 55/234 (23%)

Query: 55   GAPGSPLYRVSAPPPAPP----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
            G PG P     A PP PP    PP   G   R     A    GA   PG  G      G 
Sbjct: 1342 GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGP-VGPQGP 1400

Query: 111  AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEAR--- 165
            AG  G            ++G P  A      +   PGP  PP   PG  G PGS+     
Sbjct: 1401 AGKPGPEGLRGIPGPVGEQGLPGAAG-----QDGPPGPMGPP-GLPGLKGDPGSKGEKGH 1454

Query: 166  ----------GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMT 215
                      G  G +  R +P   G PGA G G               G P P      
Sbjct: 1455 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG---------------GIPGPA----- 1494

Query: 216  RGPVVLSGVNRQHRWPPGA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
             GP+   G       PPG   P    G  G   PA        PG  G  GPPG
Sbjct: 1495 -GPLGPPG-------PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPG 1540



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 76/304 (25%), Positives = 98/304 (32%), Gaps = 80/304 (26%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GPR L G + TP A        + G    +G  G               G PG P  + +
Sbjct: 649 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP-------------QGEPGPPGQQGN 695

Query: 66  APPPAPPPPPPPGGPSRSERPR-----AGLRPGAFVSPGPLGRRASCS------------ 108
             P   P P  P GP   + P+     AGL PGA   PG  G+                 
Sbjct: 696 PGPQGLPGPQGPIGPPGEKGPQGKPGLAGL-PGADGPPGHPGKEGQSGEKGALGPPGPQG 754

Query: 109 --------GRAGSAGRLRCSAAALSAAQRGGPA----------RAQVPPALRTFSPGPAS 150
                   G  G+ G      +     + G P           R +V         GP  
Sbjct: 755 PIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEG 814

Query: 151 PP-RASPGGRPGSEA----RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG 205
           P  RA P G PG       +G+ G       P   GP G++G                  
Sbjct: 815 PKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF----------------- 857

Query: 206 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA-LRRPRAPGRAGGG 264
           P FPG +G  +G   ++G        PG    R      G R AR    +P   G +GG 
Sbjct: 858 PGFPGANG-EKGARGVAG-------KPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD 909

Query: 265 GPPG 268
           GPPG
Sbjct: 910 GPPG 913



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 81/284 (28%), Positives = 102/284 (35%), Gaps = 37/284 (13%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
           GP+   G+Q  P            G     G  G  G+K  R   G    G PG   +R 
Sbjct: 559 GPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL--PGLPGDKGHRG 616

Query: 65  SAPPPAPPPPPPPGGPSRSERPRAGLR--PGAFVSPGPLGRRASCSGRAGSAGRLRCSAA 122
              P  PP PP   G  R E    G R  PG     G LG R    G  G+ G+   +  
Sbjct: 617 ERGPQGPPGPPGDDG-MRGEDGEIGPRGLPGEAGPRGLLGPR----GTPGAPGQPGMAGV 671

Query: 123 ALSAAQRG--GPARAQVPPALRTFSPGPAS-PPRASPGGRPGSEARGRSGAECARRVPLH 179
                 +G  GP     PP  +  +PGP   P    P G PG   +G  G      +P  
Sbjct: 672 DGPPGPKGNMGPQGEPGPPGQQG-NPGPQGLPGPQGPIGPPGE--KGPQGKPGLAGLPGA 728

Query: 180 HGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM-----TRGPVVLSGVNRQ 227
            GPPG  G      ++ Q  +  A GPP       +PG  G+      RG     G   +
Sbjct: 729 DGPPGHPG------KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE 782

Query: 228 HRWPPGASPSRSLGEAG--GERPARALRRPRAP-GRAGGGGPPG 268
             +P         G+ G  G+   R    P  P GRAG  G PG
Sbjct: 783 DGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG 826


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 92/308 (29%), Positives = 111/308 (36%), Gaps = 68/308 (22%)

Query: 46  RRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGP--------SRSERPRAGLRPGAFVS 97
           R PRG    G PG P       P  PP PP P GP        ++ +    GL PG    
Sbjct: 38  RGPRG--ERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGL 95

Query: 98  PGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPP-RA 154
            GP G      G AG+ G       A    + G  GPA A+          GPA PP +A
Sbjct: 96  MGPRGP----PGAAGAPGPQGFQGPAGEPGEPGQTGPAGAR----------GPAGPPGKA 141

Query: 155 SPGGRPGSEA----RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG----P 206
              G PG       RG  G + AR  P   G PG  G+           Q  A G    P
Sbjct: 142 GEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEP 201

Query: 207 PFPGISGMTRGPVVLSGV--NRQHRWPPGASPSR----SLGEAGGERPARALRRPRAP-- 258
             PG +G T G     G+   R     PG + +R    S+G  G   P  +   P  P  
Sbjct: 202 GAPGENG-TPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGA 260

Query: 259 ----------GRAGGGGPPGG----GIPACS--IGP-------GLARLAALGGLPSILES 295
                     G AG  GP G     G+P  S  +GP       GL       GLP +  +
Sbjct: 261 PGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGA 320

Query: 296 SRLLPSPR 303
              LP PR
Sbjct: 321 PG-LPGPR 327



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 80/278 (28%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            GP   AG    P     +  L   G     G+ G        P  A + G PG PL  ++
Sbjct: 847  GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGL----PGVAGAVGEPG-PL-GIA 900

Query: 66   APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALS 125
             PP A  PP   G P  +  P    R G   + GP GR     G+ G  G          
Sbjct: 901  GPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGR----DGQPGHKG---------- 946

Query: 126  AAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGA 185
              +RG P    + P     +PGP  P    P G+ G+  RG +G           GP G 
Sbjct: 947  --ERGYP--GNIGPVGAAGAPGPHGP--VGPAGKHGN--RGETGPSGPVGPAGAVGPRGP 998

Query: 186  SGVGSERDRKFQLHQTPARGPPFPGISGMT--RGPVVLSGVNRQHRWPPGASPSRSLGEA 243
            SG    R  K +  +   RG   PG+ G    +G   ++G +     P    P+   G A
Sbjct: 999  SGPQGIRGDKGEPGEKGPRG--LPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPA 1056

Query: 244  GGERPARALRR---PRAPGRAGGGGPPGGGIPACSIGP 278
            G   PA    R   P   G AG  GP G   PA   GP
Sbjct: 1057 GPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGP 1094



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 84/297 (28%), Positives = 106/297 (35%), Gaps = 72/297 (24%)

Query: 30  GRADEEGAAGAGSKLWRR----PRGAVS-AGAPGSPLYR----------VSAPPPAPPPP 74
           G+A E+G  G   +   R    P+GA    G PG P ++          +   P AP   
Sbjct: 139 GKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVK 198

Query: 75  PPPGGPSRSERP-RAGLRP-----GAFVSPGPLGRRASC--------SGRAGSAGRLRCS 120
             PG P  +  P + G R      G   +PGP G R S         +G  GSAG     
Sbjct: 199 GEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFP 258

Query: 121 AA--------ALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAEC 172
            A        A+  A   GPA  +    L   S GP  PP  +PG    + A+G +G   
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLS-GPVGPP-GNPGANGLTGAKGAAGLPG 316

Query: 173 ARRVPLHHGP---------------------PGASGVGSERDRKFQLHQTPARGPPFPGI 211
               P   GP                     PG +G   E   K +      +GPP P  
Sbjct: 317 VAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSG 376

Query: 212 SGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
               RGP   +G       PPG    R      G   +R L  P A GRAG  GPPG
Sbjct: 377 EEGKRGPNGEAG----SAGPPGPPGLR------GSPGSRGL--PGADGRAGVMGPPG 421



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 102/363 (28%), Positives = 121/363 (33%), Gaps = 81/363 (22%)

Query: 6   GPRRLAGLQRT--PAAYANEAAL-AISGRADEEGAAGA----GSKLWRRPRG-------- 50
           GPR L G      PA       L  I GR    G AGA    G+  +  P+G        
Sbjct: 448 GPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKN 507

Query: 51  --------AVSAGAPGSPLYRVSAPPPAPP----------PPPPPG-----GPS--RSER 85
                   A + GAPG      +  PP P           PP PPG     GPS    E 
Sbjct: 508 GDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEV 567

Query: 86  PRAGLRP--GAFVSPGPLGRRASC-----SGRAGSAGRLRCSAAALSAAQRGGPARAQVP 138
            + G R   G F  PGP G R        SG AG  G +     +      G      V 
Sbjct: 568 GKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVV 627

Query: 139 PALRTFSP-GPASPP-----RASPGGR-----PGSEAR-GRSGAECARRVPLHHGPPGAS 186
            A+ T  P GP+  P        PGG+     PG     G  G + AR  P   G PG +
Sbjct: 628 GAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPA 687

Query: 187 GVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN-----RQHRWPPGASPSRSL- 240
           G   +R    +       GP  P  S   RG V  +G N           PGA   R   
Sbjct: 688 GATGDRG---EAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAK 744

Query: 241 ------------GEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALG 287
                       G  G   PA     P   G  G GGPPG  G P  +   G    + + 
Sbjct: 745 GPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGIS 804

Query: 288 GLP 290
           G P
Sbjct: 805 GPP 807



 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 96/298 (32%), Positives = 113/298 (37%), Gaps = 59/298 (19%)

Query: 29   SGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA----PPPPPPPGGPSRS 83
            +G A   G  G AGS+    P G    G PG+   R   P P+    PP PP P G    
Sbjct: 762  AGPAGPNGPPGPAGSRGDGGPPGMT--GFPGAA-GRTGPPGPSGISGPPGPPGPAGKEGL 818

Query: 84   ERPRAGLRP-------GAFVSPGPLGRRASCSGRAGSAG--------RLRCSAAAL---- 124
              PR    P       GA   PG  G +   SG AG+AG         L  +   L    
Sbjct: 819  RGPRGDQGPVGRTGEVGAVGPPGFAGEKGP-SGEAGTAGPPGTPGPQGLLGAPGILGLPG 877

Query: 125  SAAQRGGP----ARAQVPPALRTFSPGPASPPRA--SPG--GRPGSEARGRSGAECARRV 176
            S  +RG P    A  +  P      PG   PP A  SPG  G PG    GR G       
Sbjct: 878  SRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGE--AGRDGN------ 929

Query: 177  PLHHGPPGASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS 235
            P + GPPG  G  G + +R +  +  P      PG      GPV  +G   +H       
Sbjct: 930  PGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPG----PHGPVGPAG---KHGNRGETG 982

Query: 236  PSRSLGEAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGPGLARLAALGGLPSI 292
            PS  +G AG   P    R P  P G  G  G PG   P     PGL     L GLP I
Sbjct: 983  PSGPVGPAGAVGP----RGPSGPQGIRGDKGEPGEKGPRGL--PGLKGHNGLQGLPGI 1034



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 87/313 (27%), Positives = 105/313 (33%), Gaps = 65/313 (20%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP   AG    P A   +  +   G A   G AG        PRG V  G PG       
Sbjct: 247 GPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAG--------PRGEV--GLPG------- 289

Query: 66  APPPAPPPPPPPGGPSRSERPRAGLR--------PGAFVSPGPLGRRASCSGRAGSAGRL 117
              P  PP  P        +  AGL         PG    PGP+G  A  +G  G  G  
Sbjct: 290 LSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGA-AGATGARGLVGEP 348

Query: 118 RCSAAALSAAQRGGPARA--QVPPALR--------TFSPGPASPPRASPGGRPGSEARGR 167
             + +   +  +G P  A  Q PP               G A PP   PG R    +RG 
Sbjct: 349 GPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPP-GPPGLRGSPGSRGL 407

Query: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARG-------PPFPGISGMT--RGP 218
            GA+    V    G  GASG    R       +    G       P  PG  G     GP
Sbjct: 408 PGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGP 467

Query: 219 VVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIG 277
           V L G++ +   P    P+ + GE               PG  G  GP G  G P  +  
Sbjct: 468 VGLPGIDGR---PGPIGPAGARGE---------------PGNIGFPGPKGPTGDPGKNGD 509

Query: 278 PGLARLAALGGLP 290
            G A LA   G P
Sbjct: 510 KGHAGLAGARGAP 522



 Score = 32.3 bits (72), Expect = 0.54
 Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 20/107 (18%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPR----GAVS-AGAPGSP 60
            G   L GL      + ++ A    G A   G AG      +  R    G V  AG  G  
Sbjct: 1024 GHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQ 1083

Query: 61   LYRVSAPPPAPPPPPPPGGPS-------------RSERPRA--GLRP 92
             ++  A PP PP PP P G S             R+++PR+   LRP
Sbjct: 1084 GHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRP 1130



 Score = 32.0 bits (71), Expect = 0.71
 Identities = 42/141 (29%), Positives = 48/141 (34%), Gaps = 16/141 (11%)

Query: 29   SGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS-RSERPR 87
            +G+    G  G    +   P GAV    P  P   +      P    P G P  +     
Sbjct: 972  AGKHGNRGETGPSGPVG--PAGAVGPRGPSGP-QGIRGDKGEPGEKGPRGLPGLKGHNGL 1028

Query: 88   AGLR--------PGAFVSPGPLGRR--ASCSGRAGSAGRLRCSAAALSAAQRGGPARAQV 137
             GL          GA  S GP G R  A  SG AG  GR         A  RG   +   
Sbjct: 1029 QGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRG--PQGHQ 1086

Query: 138  PPALRTFSPGPASPPRASPGG 158
             PA     PGP  PP  S GG
Sbjct: 1087 GPAGPPGPPGPPGPPGVSGGG 1107


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 89/305 (29%), Positives = 101/305 (33%), Gaps = 57/305 (18%)

Query: 12   GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAP 71
            G  RTP     E  L   G+  E G  G   +          AG PGSP        P P
Sbjct: 739  GSVRTPGGRVKEGGL--KGQKGEPGVPGPPGR----------AGPPGSPCL------PGP 780

Query: 72   PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGG 131
            P  P P  P     P     PG    PGP GR  +  GR G  G             +G 
Sbjct: 781  PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGT-PGRDGEPGDPGEDGKPGDTGPQGF 839

Query: 132  PAR-AQVPPALRTFSPGPASPPRASPGGRPGS---------------EARGRSGAECARR 175
            P     V P      PG        P G PG                E  G  G   A R
Sbjct: 840  PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALR 899

Query: 176  VPLHH----GPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLSGVNRQ--- 227
             P       GPPG  G+  E  R F ++ +   GP   PG+ G   GP    G+      
Sbjct: 900  GPRGFPGPPGPPGVPGLPGEPGR-FGVNSSDVPGPAGLPGVPGR-EGPPGFPGLPGPPGP 957

Query: 228  --HRWPPGASPSR-SLGEAGGER---------PARALRRPRAPGRAGGGGPPGGGIPACS 275
                 PPG +  + SLGEAG            PA A       G  G  GPPG   P   
Sbjct: 958  PGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGP 1017

Query: 276  IGPGL 280
             GPGL
Sbjct: 1018 PGPGL 1022



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 81/277 (29%), Positives = 97/277 (35%), Gaps = 25/277 (9%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVS-AGAPGSP 60
            GP    GL   P     E     +G+    G AGA    GSK    P GA   +G  G+P
Sbjct: 944  GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 1003

Query: 61   LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRP---GAFVSPGPLGRRASCSGRAGSAGRL 117
                   PP PP PP PG P+  +       P    A  + GP G      G  G  G  
Sbjct: 1004 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQG-PPGLPGLKGDPGVP 1062

Query: 118  RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEARGRSGAECARR 175
                A       G P    +P       P      R S G  G PG +  G+ G      
Sbjct: 1063 GLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPG------ 1116

Query: 176  VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS 235
            +P   GPPG     SE+D        P   P F G  G   GP    G ++  R  PG  
Sbjct: 1117 LPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPG-PAGPKGNLG-SKGERGSPG-- 1172

Query: 236  PSRSLGEAGG----ERPARALRRPRAPGRAGGGGPPG 268
            P    GE G     +  A    +  A G  G  GPPG
Sbjct: 1173 PKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPG 1209



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 81/311 (26%), Positives = 102/311 (32%), Gaps = 69/311 (22%)

Query: 6    GPRRLAGLQRTPAAYAN---EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
            G +   G +  P  Y     +  +   GR    G  G   +       ++  G  G P  
Sbjct: 1197 GAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMP-- 1254

Query: 63   RVSAPPPAPPPPPPPGGP-------SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG 115
                PP  P PP PPG P       + S RP     PG    PGP G +    G  G  G
Sbjct: 1255 ---GPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEV-GPPGPPG 1310

Query: 116  RLRCSAAALSAAQRG--------GPARAQVPPALRTF----SPGPASPPRASPGGRPGSE 163
            +       L A  +G        G    +  P    F     PGP  PP   P G PG  
Sbjct: 1311 QFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPP--GPRGYPG-- 1366

Query: 164  ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
              G  G E  R  P   GP G  G+G      ++  Q P  GPP P       GP    G
Sbjct: 1367 IPGPKG-ESIRGQPGPPGPQGPPGIG------YEGRQGPP-GPPGP------PGPPSFPG 1412

Query: 224  VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
             +RQ                        +  P  PG  G  GPPG    +  +     R 
Sbjct: 1413 PHRQ-----------------------TISVPGPPGPPGPPGPPGTMGASSGVRLWATRQ 1449

Query: 284  AALGGLPSILE 294
            A LG +  + E
Sbjct: 1450 AMLGQVHEVPE 1460



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 81/281 (28%), Positives = 96/281 (34%), Gaps = 49/281 (17%)

Query: 12   GLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA 70
            G+   P A     A  + G     G  G AG +  +  RG  S G  G P       P  
Sbjct: 1060 GVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG--SRGEKGDPGKDGVGQPGL 1117

Query: 71   PPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRR--ASCSGRAGSAGRLRCSAAALSAA 127
            P PP PPG            + G+ +S PGP GR   A   G AG  G L       S  
Sbjct: 1118 PGPPGPPGPVVYVSE-----QDGSVLSVPGPEGRPGFAGFPGPAGPKGNLG------SKG 1166

Query: 128  QRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASG 187
            +RG P      P      PG    P    GG  G   +G  G    R  P  +G PG  G
Sbjct: 1167 ERGSPG-----PKGEKGEPGSIFSP---DGGALGPAQKGAKGEPGFRGPPGPYGRPGYKG 1218

Query: 188  -VGSERDRKFQLHQTPARGPPFPGISGM-----TRGPVVLSGVNRQHRWPPGASPSRSLG 241
             +G            P R P  PG++G+       G   L    R    PPG  P    G
Sbjct: 1219 EIG-----------FPGR-PGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG--PPGPPG 1264

Query: 242  EAG----GERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
              G             RP  PG  G  GPPG       +GP
Sbjct: 1265 PPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGP 1305



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 81/285 (28%), Positives = 98/285 (34%), Gaps = 59/285 (20%)

Query: 33  DEEGAAG-AGSKLW-RRPRGAVSAGAPGSPLYRVSAPPPAPPPP---------------- 74
           D +GA+G +GS L   R       GA   P  R+ APPP   PP                
Sbjct: 658 DSDGASGDSGSGLGDARELLREETGAALKP--RLPAPPPVTTPPLAGGSSTEDSRSEEVE 715

Query: 75  -----------PPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
                        PG  S S    +   PG  V  G L  +    G  G  GR     + 
Sbjct: 716 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSP 775

Query: 124 LSAAQRGGPARAQ----VPPALRTFSPGPASPPRASPGGRPGSEAR-GRSGAECARRVPL 178
                 G P          PAL+T  PGP  PP   P GR G+  R G  G       P 
Sbjct: 776 CLPGPPGLPCPVSPLGPAGPALQTV-PGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPG 832

Query: 179 HHGPPGASG----VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA 234
             GP G  G    VG + D+         RGPP P      +GP    G + +H      
Sbjct: 833 DTGPQGFPGTPGDVGPKGDKGDP--GVGERGPPGP------QGPPGPPGPSFRH----DK 880

Query: 235 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 279
                +  +G      ALR PR  G  G  GPP  G+P     PG
Sbjct: 881 LTFIDMEGSGFGGDLEALRGPR--GFPGPPGPP--GVPGLPGEPG 921



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 36/135 (26%), Positives = 47/135 (34%), Gaps = 24/135 (17%)

Query: 41  GSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGP 100
           G+ LW       S G P SP    +     P P P P    R   P  G  P     P P
Sbjct: 165 GTTLWP------SRGIPSSPGAHTTEAGTLPAPTPSPPSLGRPWAPLTG--PSV---PPP 213

Query: 101 LGRRASCSGRAGSA---GRLRCSAAALSAAQRGGPARAQVPPALRTFSP----------G 147
              RAS S   G A   G L+   +   +     P++    P +R  +P          G
Sbjct: 214 SSGRASLSSLLGGAPPWGSLQDPDSQGLSPAAAAPSQQLQRPDVRLRTPLLHPLVMGSLG 273

Query: 148 PASPPRASPGGRPGS 162
             + P A   G PG+
Sbjct: 274 KHAAPSAFSSGLPGA 288


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 89/305 (29%), Positives = 101/305 (33%), Gaps = 57/305 (18%)

Query: 12  GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAP 71
           G  RTP     E  L   G+  E G  G   +          AG PGSP        P P
Sbjct: 324 GSVRTPGGRVKEGGL--KGQKGEPGVPGPPGR----------AGPPGSPCL------PGP 365

Query: 72  PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGG 131
           P  P P  P     P     PG    PGP GR  +  GR G  G             +G 
Sbjct: 366 PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGT-PGRDGEPGDPGEDGKPGDTGPQGF 424

Query: 132 PAR-AQVPPALRTFSPGPASPPRASPGGRPGS---------------EARGRSGAECARR 175
           P     V P      PG        P G PG                E  G  G   A R
Sbjct: 425 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALR 484

Query: 176 VPLHH----GPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLSGVNRQ--- 227
            P       GPPG  G+  E  R F ++ +   GP   PG+ G   GP    G+      
Sbjct: 485 GPRGFPGPPGPPGVPGLPGEPGR-FGVNSSDVPGPAGLPGVPGR-EGPPGFPGLPGPPGP 542

Query: 228 --HRWPPGASPSR-SLGEAGGER---------PARALRRPRAPGRAGGGGPPGGGIPACS 275
                PPG +  + SLGEAG            PA A       G  G  GPPG   P   
Sbjct: 543 PGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGP 602

Query: 276 IGPGL 280
            GPGL
Sbjct: 603 PGPGL 607



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 81/277 (29%), Positives = 97/277 (35%), Gaps = 25/277 (9%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVS-AGAPGSP 60
           GP    GL   P     E     +G+    G AGA    GSK    P GA   +G  G+P
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 588

Query: 61  LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRP---GAFVSPGPLGRRASCSGRAGSAGRL 117
                  PP PP PP PG P+  +       P    A  + GP G      G  G  G  
Sbjct: 589 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQG-PPGLPGLKGDPGVP 647

Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEARGRSGAECARR 175
               A       G P    +P       P      R S G  G PG +  G+ G      
Sbjct: 648 GLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPG------ 701

Query: 176 VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS 235
           +P   GPPG     SE+D        P   P F G  G   GP    G ++  R  PG  
Sbjct: 702 LPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPG-PAGPKGNLG-SKGERGSPG-- 757

Query: 236 PSRSLGEAGG----ERPARALRRPRAPGRAGGGGPPG 268
           P    GE G     +  A    +  A G  G  GPPG
Sbjct: 758 PKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPG 794



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 81/311 (26%), Positives = 102/311 (32%), Gaps = 69/311 (22%)

Query: 6    GPRRLAGLQRTPAAYAN---EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
            G +   G +  P  Y     +  +   GR    G  G   +       ++  G  G P  
Sbjct: 782  GAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMP-- 839

Query: 63   RVSAPPPAPPPPPPPGGP-------SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG 115
                PP  P PP PPG P       + S RP     PG    PGP G +    G  G  G
Sbjct: 840  ---GPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEV-GPPGPPG 895

Query: 116  RLRCSAAALSAAQRG--------GPARAQVPPALRTF----SPGPASPPRASPGGRPGSE 163
            +       L A  +G        G    +  P    F     PGP  PP   P G PG  
Sbjct: 896  QFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPP--GPRGYPG-- 951

Query: 164  ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
              G  G E  R  P   GP G  G+G      ++  Q P  GPP P       GP    G
Sbjct: 952  IPGPKG-ESIRGQPGPPGPQGPPGIG------YEGRQGPP-GPPGP------PGPPSFPG 997

Query: 224  VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
             +RQ                        +  P  PG  G  GPPG    +  +     R 
Sbjct: 998  PHRQ-----------------------TISVPGPPGPPGPPGPPGTMGASSGVRLWATRQ 1034

Query: 284  AALGGLPSILE 294
            A LG +  + E
Sbjct: 1035 AMLGQVHEVPE 1045



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 81/281 (28%), Positives = 96/281 (34%), Gaps = 49/281 (17%)

Query: 12  GLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA 70
           G+   P A     A  + G     G  G AG +  +  RG  S G  G P       P  
Sbjct: 645 GVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG--SRGEKGDPGKDGVGQPGL 702

Query: 71  PPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRR--ASCSGRAGSAGRLRCSAAALSAA 127
           P PP PPG            + G+ +S PGP GR   A   G AG  G L       S  
Sbjct: 703 PGPPGPPGPVVYVSE-----QDGSVLSVPGPEGRPGFAGFPGPAGPKGNLG------SKG 751

Query: 128 QRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASG 187
           +RG P      P      PG    P    GG  G   +G  G    R  P  +G PG  G
Sbjct: 752 ERGSPG-----PKGEKGEPGSIFSP---DGGALGPAQKGAKGEPGFRGPPGPYGRPGYKG 803

Query: 188 -VGSERDRKFQLHQTPARGPPFPGISGM-----TRGPVVLSGVNRQHRWPPGASPSRSLG 241
            +G            P R P  PG++G+       G   L    R    PPG  P    G
Sbjct: 804 EIG-----------FPGR-PGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG--PPGPPG 849

Query: 242 EAG----GERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
             G             RP  PG  G  GPPG       +GP
Sbjct: 850 PPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGP 890



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 81/285 (28%), Positives = 98/285 (34%), Gaps = 59/285 (20%)

Query: 33  DEEGAAG-AGSKLW-RRPRGAVSAGAPGSPLYRVSAPPPAPPPP---------------- 74
           D +GA+G +GS L   R       GA   P  R+ APPP   PP                
Sbjct: 243 DSDGASGDSGSGLGDARELLREETGAALKP--RLPAPPPVTTPPLAGGSSTEDSRSEEVE 300

Query: 75  -----------PPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
                        PG  S S    +   PG  V  G L  +    G  G  GR     + 
Sbjct: 301 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSP 360

Query: 124 LSAAQRGGPARAQ----VPPALRTFSPGPASPPRASPGGRPGSEAR-GRSGAECARRVPL 178
                 G P          PAL+T  PGP  PP   P GR G+  R G  G       P 
Sbjct: 361 CLPGPPGLPCPVSPLGPAGPALQTV-PGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPG 417

Query: 179 HHGPPGASG----VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA 234
             GP G  G    VG + D+         RGPP P      +GP    G + +H      
Sbjct: 418 DTGPQGFPGTPGDVGPKGDKGDP--GVGERGPPGP------QGPPGPPGPSFRH----DK 465

Query: 235 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 279
                +  +G      ALR PR  G  G  GPP  G+P     PG
Sbjct: 466 LTFIDMEGSGFGGDLEALRGPR--GFPGPPGPP--GVPGLPGEPG 506


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 89/305 (29%), Positives = 101/305 (33%), Gaps = 57/305 (18%)

Query: 12  GLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAP 71
           G  RTP     E  L   G+  E G  G   +          AG PGSP        P P
Sbjct: 504 GSVRTPGGRVKEGGL--KGQKGEPGVPGPPGR----------AGPPGSPCL------PGP 545

Query: 72  PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGG 131
           P  P P  P     P     PG    PGP GR  +  GR G  G             +G 
Sbjct: 546 PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGT-PGRDGEPGDPGEDGKPGDTGPQGF 604

Query: 132 PAR-AQVPPALRTFSPGPASPPRASPGGRPGS---------------EARGRSGAECARR 175
           P     V P      PG        P G PG                E  G  G   A R
Sbjct: 605 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALR 664

Query: 176 VPLHH----GPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLSGVNRQ--- 227
            P       GPPG  G+  E  R F ++ +   GP   PG+ G   GP    G+      
Sbjct: 665 GPRGFPGPPGPPGVPGLPGEPGR-FGVNSSDVPGPAGLPGVPGR-EGPPGFPGLPGPPGP 722

Query: 228 --HRWPPGASPSR-SLGEAGGER---------PARALRRPRAPGRAGGGGPPGGGIPACS 275
                PPG +  + SLGEAG            PA A       G  G  GPPG   P   
Sbjct: 723 PGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGP 782

Query: 276 IGPGL 280
            GPGL
Sbjct: 783 PGPGL 787



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 81/277 (29%), Positives = 97/277 (35%), Gaps = 25/277 (9%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVS-AGAPGSP 60
           GP    GL   P     E     +G+    G AGA    GSK    P GA   +G  G+P
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 768

Query: 61  LYRVSAPPPAPPPPPPPGGPSRSERPRAGLRP---GAFVSPGPLGRRASCSGRAGSAGRL 117
                  PP PP PP PG P+  +       P    A  + GP G      G  G  G  
Sbjct: 769 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQG-PPGLPGLKGDPGVP 827

Query: 118 RCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG--GRPGSEARGRSGAECARR 175
               A       G P    +P       P      R S G  G PG +  G+ G      
Sbjct: 828 GLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPG------ 881

Query: 176 VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS 235
           +P   GPPG     SE+D        P   P F G  G   GP    G ++  R  PG  
Sbjct: 882 LPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPG-PAGPKGNLG-SKGERGSPG-- 937

Query: 236 PSRSLGEAGG----ERPARALRRPRAPGRAGGGGPPG 268
           P    GE G     +  A    +  A G  G  GPPG
Sbjct: 938 PKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPG 974



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 81/311 (26%), Positives = 102/311 (32%), Gaps = 69/311 (22%)

Query: 6    GPRRLAGLQRTPAAYAN---EAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
            G +   G +  P  Y     +  +   GR    G  G   +       ++  G  G P  
Sbjct: 962  GAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMP-- 1019

Query: 63   RVSAPPPAPPPPPPPGGP-------SRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAG 115
                PP  P PP PPG P       + S RP     PG    PGP G +    G  G  G
Sbjct: 1020 ---GPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEV-GPPGPPG 1075

Query: 116  RLRCSAAALSAAQRG--------GPARAQVPPALRTF----SPGPASPPRASPGGRPGSE 163
            +       L A  +G        G    +  P    F     PGP  PP   P G PG  
Sbjct: 1076 QFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPP--GPRGYPG-- 1131

Query: 164  ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
              G  G E  R  P   GP G  G+G      ++  Q P  GPP P       GP    G
Sbjct: 1132 IPGPKG-ESIRGQPGPPGPQGPPGIG------YEGRQGPP-GPPGP------PGPPSFPG 1177

Query: 224  VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARL 283
             +RQ                        +  P  PG  G  GPPG    +  +     R 
Sbjct: 1178 PHRQ-----------------------TISVPGPPGPPGPPGPPGTMGASSGVRLWATRQ 1214

Query: 284  AALGGLPSILE 294
            A LG +  + E
Sbjct: 1215 AMLGQVHEVPE 1225



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 81/281 (28%), Positives = 96/281 (34%), Gaps = 49/281 (17%)

Query: 12   GLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSAGAPGSPLYRVSAPPPA 70
            G+   P A     A  + G     G  G AG +  +  RG  S G  G P       P  
Sbjct: 825  GVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG--SRGEKGDPGKDGVGQPGL 882

Query: 71   PPPPPPPGGPSRSERPRAGLRPGAFVS-PGPLGRR--ASCSGRAGSAGRLRCSAAALSAA 127
            P PP PPG            + G+ +S PGP GR   A   G AG  G L       S  
Sbjct: 883  PGPPGPPGPVVYVSE-----QDGSVLSVPGPEGRPGFAGFPGPAGPKGNLG------SKG 931

Query: 128  QRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGASG 187
            +RG P      P      PG    P    GG  G   +G  G    R  P  +G PG  G
Sbjct: 932  ERGSPG-----PKGEKGEPGSIFSP---DGGALGPAQKGAKGEPGFRGPPGPYGRPGYKG 983

Query: 188  -VGSERDRKFQLHQTPARGPPFPGISGM-----TRGPVVLSGVNRQHRWPPGASPSRSLG 241
             +G            P R P  PG++G+       G   L    R    PPG  P    G
Sbjct: 984  EIG-----------FPGR-PGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG--PPGPPG 1029

Query: 242  EAG----GERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
              G             RP  PG  G  GPPG       +GP
Sbjct: 1030 PPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGP 1070



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 81/285 (28%), Positives = 98/285 (34%), Gaps = 59/285 (20%)

Query: 33  DEEGAAG-AGSKLW-RRPRGAVSAGAPGSPLYRVSAPPPAPPPP---------------- 74
           D +GA+G +GS L   R       GA   P  R+ APPP   PP                
Sbjct: 423 DSDGASGDSGSGLGDARELLREETGAALKP--RLPAPPPVTTPPLAGGSSTEDSRSEEVE 480

Query: 75  -----------PPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
                        PG  S S    +   PG  V  G L  +    G  G  GR     + 
Sbjct: 481 EQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSP 540

Query: 124 LSAAQRGGPARAQ----VPPALRTFSPGPASPPRASPGGRPGSEAR-GRSGAECARRVPL 178
                 G P          PAL+T  PGP  PP   P GR G+  R G  G       P 
Sbjct: 541 CLPGPPGLPCPVSPLGPAGPALQTV-PGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPG 597

Query: 179 HHGPPGASG----VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA 234
             GP G  G    VG + D+         RGPP P      +GP    G + +H      
Sbjct: 598 DTGPQGFPGTPGDVGPKGDKGDP--GVGERGPPGP------QGPPGPPGPSFRH----DK 645

Query: 235 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 279
                +  +G      ALR PR  G  G  GPP  G+P     PG
Sbjct: 646 LTFIDMEGSGFGGDLEALRGPR--GFPGPPGPP--GVPGLPGEPG 686


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 88/292 (30%), Positives = 99/292 (33%), Gaps = 55/292 (18%)

Query: 26  LAISGRADEEGAAGAGSKLWRRPRGAVS-AGAPGSPLYRVSAPPPAPPPPPPPGGPSRSE 84
           +A+ G     G  G        PRG    +G PG P Y        P  P PPG PS   
Sbjct: 53  IAVRGEQGTPGPPGPAG-----PRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPG-PSAVG 106

Query: 85  RPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTF 144
           +P     PG     GP G +    G  G AG L             GPA   VP      
Sbjct: 107 KPGVPGLPGKPGERGPYGPK----GDVGPAG-LPGPRGPPGPPGIPGPAGISVPGKPGQQ 161

Query: 145 SPGPASPPRASPG-----------GRPGSEARGRSGAECARRVPLHHGPPGASGV----- 188
            P  A  PR  PG           G+ G    G  G    R +P   GP G SG      
Sbjct: 162 GPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGK 221

Query: 189 ----------GSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSR 238
                     G + DR F     P  GPP P      RGP    G+ +     PGA+   
Sbjct: 222 RGENGVPGQPGIKGDRGFPGEMGPI-GPPGPQGPPGERGP---EGIGK-----PGAA--- 269

Query: 239 SLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 290
             G  G          P APG AG  GPPG G P     PGL       GLP
Sbjct: 270 --GAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGL---PGLKGERGPAGLP 316



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 94/318 (29%), Positives = 120/318 (37%), Gaps = 59/318 (18%)

Query: 30  GRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR--VSAPPPAPPPPPP----PGGPS-R 82
           G   E G  G G     +P  A + G PG P  +    AP  A PP PP    PG P  +
Sbjct: 253 GPPGERGPEGIG-----KPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLK 307

Query: 83  SERPRAGLR--PGAFVSPGPLGR--RASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVP 138
            ER  AGL   PGA    GP G   +   +G  G+ G             +G P    +P
Sbjct: 308 GERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMG---------PQGPKGIPGSHGLP 358

Query: 139 -PALRTFSPGPASPP-----RASPG--------GRPGSEA-RGRSGAECARRVPLHHGPP 183
            P   T   GPA  P     R SPG        G+PG +  +G  G    +  P   GPP
Sbjct: 359 GPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPP 418

Query: 184 GASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--------NRQHRWPPGA 234
           G  G VG    +    H   A     PGI G TRGP+   G+        +     PPG 
Sbjct: 419 GLPGPVGPAGAKGMPGHNGEAGPRGAPGIPG-TRGPIGPPGIPGFPGSKGDPGSPGPPGP 477

Query: 235 SPSRS------LGEAGGERPARALRRPRAPGRAGGGGPPGGGI-PACSIGPGLARLAALG 287
           +   +       G  G   P      P  PG  G  GPPG  + P   I  G  +  +L 
Sbjct: 478 AGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKAG--QRPSLS 535

Query: 288 GLPSILESSRLLPSPRSS 305
           G P +  +  +   P S+
Sbjct: 536 GTPLVSANQGVTGMPVSA 553



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 83/310 (26%), Positives = 97/310 (31%), Gaps = 43/310 (13%)

Query: 6   GPRRLAGLQRTPAA-----YANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAG---A 56
           GPR   G +  P          E      GR  E G  G  G      P G    G    
Sbjct: 168 GPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGV 227

Query: 57  PGSPLYRVSAP---------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASC 107
           PG P  +             PP P  PP   GP    +P A   PG    PG  G     
Sbjct: 228 PGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKG-LPGA 286

Query: 108 SGRAGSAGRLRCSAAALSAAQ-RGGPARAQVPPALRTFSPGPASPPRASPGGRPG-SEAR 165
            G AG  G        L   +   GPA     P  +    GPA  P     G+PG +   
Sbjct: 287 PGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKG-EQGPAGLP-----GKPGLTGPP 340

Query: 166 GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP-------FPGISGM---- 214
           G  G +  + +P  HG PG  G                RG P       +PG  G+    
Sbjct: 341 GNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPK 400

Query: 215 ----TRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-G 269
                 GP    GV      P    P+ + G  G    A     P  PG  G  GPPG  
Sbjct: 401 GNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIP 460

Query: 270 GIPACSIGPG 279
           G P     PG
Sbjct: 461 GFPGSKGDPG 470



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 70/240 (29%), Positives = 76/240 (31%), Gaps = 68/240 (28%)

Query: 55  GAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSA 114
           G PG P    + P   P P  PPG P        G  PG    PGP     S  G+ G  
Sbjct: 60  GTPGPP--GPAGPRGHPGPSGPPGKPGYGSPGLQG-EPGLPGPPGP-----SAVGKPGVP 111

Query: 115 GRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAEC 172
           G            +RG  GP     P  L    PGP  PP   P G PG       G   
Sbjct: 112 G------LPGKPGERGPYGPKGDVGPAGL----PGPRGPP--GPPGIPGPAGISVPGK-- 157

Query: 173 ARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPP 232
               P   GP GA G                RG  FPG  G    P    G+N Q     
Sbjct: 158 ----PGQQGPTGAPG---------------PRG--FPGEKGAPGVP----GMNGQK---- 188

Query: 233 GASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSI 292
                   GE G   P R       PG  G  GP G   P+   G G      + G P I
Sbjct: 189 --------GEMGYGAPGR-------PGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGI 233



 Score = 37.0 bits (84), Expect = 0.022
 Identities = 50/199 (25%), Positives = 66/199 (33%), Gaps = 21/199 (10%)

Query: 30  GRADEEGAAGAGSKLWRRPRGAVSA--GAPGSPLYRVSAPPPAPPPPPPPGGPSRSE--- 84
           G   E G+ G+  K     +  +    G PG P  +       PP  P P GP+ ++   
Sbjct: 374 GAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMP 433

Query: 85  --RPRAGLR--PGAFVSPGPLGRRA-----SCSGRAGSAGRLRCSAAALSAAQRGGPARA 135
                AG R  PG   + GP+G           G  GS G      A ++     GP   
Sbjct: 434 GHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPP--GPAGIATKGLNGPTGP 491

Query: 136 QVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARR-----VPLHHGPPGASGVGS 190
             PP  R  S  P  P    P G PG         +  +R      PL     G +G+  
Sbjct: 492 PGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMPV 551

Query: 191 ERDRKFQLHQTPARGPPFP 209
                      PA G P P
Sbjct: 552 SAFTVILSKAYPAIGTPIP 570



 Score = 35.0 bits (79), Expect = 0.084
 Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVS-AGAPGSPLYRV 64
           GPR   G+  T             G   + G+ G         +G     G PG P  R 
Sbjct: 440 GPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRG 499

Query: 65  -SAPPPAPPPPPPPGGPSRSERP----RAGLRPGAFVSP 98
            S  P  P PP PPG P ++  P    +AG RP    +P
Sbjct: 500 HSGEPGLPGPPGPPGPPGQAVMPEGFIKAGQRPSLSGTP 538


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 80/286 (27%), Positives = 104/286 (36%), Gaps = 55/286 (19%)

Query: 29   SGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRA 88
            +G+A EEG  G+  +  +        G PG P Y     P      P P GP   E+ ++
Sbjct: 769  AGQAGEEGPPGSAGEKGK-------LGVPGLPGYPGRPGPKGSIGFPGPLGPI-GEKGKS 820

Query: 89   GL--RPGAFVSPGPLGRRAS-----CSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPAL 141
            G   +PG     GP G R        +G+ G  G +    A     ++G P   Q PP  
Sbjct: 821  GKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPG-LQGPPGF 879

Query: 142  RTFSPGPASPP-RASPGGRPGSEA-RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLH 199
                PGP  PP      GRPG    RG  G +         GPPG +GV   + +  ++ 
Sbjct: 880  ----PGPKGPPGHQGKDGRPGHPGQRGELGFQGQT------GPPGPAGVLGPQGKTGEVG 929

Query: 200  QTPARGPP----------FPGISGM--------------TRGPVVLSGVNRQHRWPPGAS 235
                RGPP           PG+ G                 GP  L G       P    
Sbjct: 930  PLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPG 989

Query: 236  PSRSLGEAGGERPARALRRP--RAP-GRAGGGGPPGGGIPACSIGP 278
            P+   G+ G   P  A   P  R P G AGG G PG       +GP
Sbjct: 990  PTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGP 1035



 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 88/326 (26%), Positives = 105/326 (32%), Gaps = 70/326 (21%)

Query: 4    SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYR 63
            S GP    G +       +E    + G   + GA G   +     RG   AG PG     
Sbjct: 1167 SMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGE-----RG--DAGDPG----- 1214

Query: 64   VSAPPPAPPPPPPPG--------GPSRSERPRAGLRP----GAFVSPGPLGRRASCSGRA 111
               PP AP  P P G        GPS +  P     P    GA  S GP G      G  
Sbjct: 1215 ---PPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTG----LPGDL 1267

Query: 112  GSAGRLRCSAAALSAAQRGGPARAQVP-PALRTFSPGPASPP-RASPGGRPGSEAR---- 165
            G  G    S    S  ++G P     P P   +  PG   PP +  P G  G E R    
Sbjct: 1268 GPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEK 1327

Query: 166  ------------GRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPP------ 207
                        GR+G   AR  P   GP G  G+         L      GPP      
Sbjct: 1328 GAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPS 1387

Query: 208  -FPGISGMTR--------------GPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARAL 252
              PG+ G T               GP   +G       P    P    G+ G   P  +L
Sbjct: 1388 GLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSL 1447

Query: 253  RRPRAPGRAGGGGPPGGGIPACSIGP 278
              P  PG AG  G  G      S+GP
Sbjct: 1448 GHPGPPGVAGPLGQKGSKGSPGSMGP 1473



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 83/270 (30%), Positives = 101/270 (37%), Gaps = 57/270 (21%)

Query: 30   GRADEEGAAGAGSKLWRRPRGAVSA-GAPGSP----LYRVSAPPPAPPPPPPPGGPSRSE 84
            G   E G  GA  +    P+G V   GAPG P    L  +  PP  P P  PPG   +  
Sbjct: 836  GSRGERGQPGATGQ--PGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDG 893

Query: 85   RP-RAGLR-----PGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRG-----GPA 133
            RP   G R      G    PGP G      G+ G  G L          +RG     GP 
Sbjct: 894  RPGHPGQRGELGFQGQTGPPGPAGVLGP-QGKTGEVGPL---------GERGPPGPPGPP 943

Query: 134  RAQVPPAL--RTFSPGPASPP-----------RASPGGRPGSEARGRSGAECARRVPLHH 180
              Q  P L  R  + G   PP           R  PG + G    G +G +  +      
Sbjct: 944  GEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDK------ 997

Query: 181  GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPSR 238
            GPPG  G       +  L   PA G   PG SG + GPV  +G   +R  R PPG +   
Sbjct: 998  GPPGPVGANGSPGERGPL--GPAGGIGLPGQSG-SEGPVGPAGKKGSRGERGPPGPT--- 1051

Query: 239  SLGEAGGERPARALRRPRAPGRAGGGGPPG 268
              G+ G   P   L  P A G +G  G  G
Sbjct: 1052 --GKDGIPGPLGPLGPPGAAGPSGEEGDKG 1079



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 90/335 (26%), Positives = 107/335 (31%), Gaps = 46/335 (13%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
            GP    G+           A   SG   ++G  GA G K  +  +G   AG PG P  R 
Sbjct: 1049 GPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKG--DAGPPGQPGIRG 1106

Query: 65   SAPPPAPPPPP-------PPG--GPSRSERPRAGLR----PGAFVSPGPLGRRASCS--- 108
             A  P PP          PPG  G    +  R  +     PG    PGP G +       
Sbjct: 1107 PAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVG 1166

Query: 109  --GRAGSAGRLRCSAAALSAAQRGGPARAQVPPALR-------TFSPGPASPPRASPGGR 159
              G  G+ G         S    G P     P A+           PGP   P   PG +
Sbjct: 1167 SMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAP-GIPGPK 1225

Query: 160  PGSEARGRSGAECARRVPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMTR-- 216
                 +G SG   A   P   GPPG  G  GS           P   P   GI G     
Sbjct: 1226 GDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEK 1285

Query: 217  ---------GPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPP 267
                     GP   SG       P    PS  +G  G E    A   P   G  G  GP 
Sbjct: 1286 GDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPM 1345

Query: 268  GGGIPACSIGPGLARLAALGGLPSILESSRLLPSP 302
            G   P   +GP       L G+P  +    LL +P
Sbjct: 1346 GARGPPGRVGP-----EGLRGIPGPVGEPGLLGAP 1375



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 92/320 (28%), Positives = 113/320 (35%), Gaps = 65/320 (20%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSA-GAPGSPLYR 63
           GPR L G    P            GR   +GA G  G    +  RG     G PG    R
Sbjct: 512 GPRGLQGPHGPPGRVGK------MGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQR 565

Query: 64  VS---APPPAPPP---------PPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--SCSG 109
                   P PP          PP P G +    PR  L P    SPGP GR       G
Sbjct: 566 GDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRG--SPGPTGRPGVTGIDG 623

Query: 110 RAGSAGRLRCSAAALSAAQRGGPARAQVP-PALRTFSPGPASPPRASPG--GRPGSEA-- 164
             G+ G +          Q+G      +P P     +PG   PP  +PG  G PGS+   
Sbjct: 624 APGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPP-GNPGIPGLPGSDGPL 682

Query: 165 -----RGRSGAECARRVPLHHGPPGASGV----GSERDRKFQLHQTPARGPPFPGISGMT 215
                 G +G + A+  P   GPPG  G     G+  +R  Q  +       FPG     
Sbjct: 683 GHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGF---- 738

Query: 216 RGPVVLSGVNRQHRWPPGA----------SPSRSLGEAGGERPARA------LRRPRAPG 259
           +G V L G     +  PGA           P    G+AG E P  +      L  P  PG
Sbjct: 739 KGDVGLKG----DQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPG 794

Query: 260 RAGGGGPPGG-GIPACSIGP 278
             G  GP G  G P   +GP
Sbjct: 795 YPGRPGPKGSIGFPG-PLGP 813



 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 80/288 (27%), Positives = 105/288 (36%), Gaps = 35/288 (12%)

Query: 18  AAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPP-PPP 76
           A Y +     I   A E+GA G  + + +  +     GAPG       + PP PP  P  
Sbjct: 358 AEYPSRTQFQIFPGAGEKGAKGEPAVIEKGQQFEGPPGAPGPQGVVGPSGPPGPPGFPGD 417

Query: 77  PGGPSRSERPRA----GLR--PGAFVSPGPLGRRASCSGRAGSAGRLRCSAA--ALSAAQ 128
           PG P  +  P      G+R  PG  +         S  G   S  + +  A       + 
Sbjct: 418 PGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSM 477

Query: 129 RGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA-RGRSGAECARRVPLHHGPPGASG 187
           +G P      P   T  PGP   P     G PG +   G  G +  R +   HGPPG  G
Sbjct: 478 KGPPG-----PVGLTGRPGPVGLP-----GHPGLKGEEGAEGPQGPRGLQGPHGPPGRVG 527

Query: 188 ----VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
                G++  R       P     F G+ G+  G     G +  H   PG  P    GE 
Sbjct: 528 KMGRPGADGARGLPGDTGPKGDRGFDGLPGLP-GEKGQRG-DFGHVGQPG--PPGEDGER 583

Query: 244 GGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP-GLARLAALGGLP 290
           G E P      P   G+AG  GP G   P  S GP G   +  + G P
Sbjct: 584 GAEGP------PGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAP 625



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 84/289 (29%), Positives = 100/289 (34%), Gaps = 50/289 (17%)

Query: 14  QRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPP- 72
           Q    A   +  L++ G     G  G       RP      G PG      +  P  P  
Sbjct: 463 QAQAQAVLQQTQLSMKGPPGPVGLTG-------RPGPVGLPGHPGLKGEEGAEGPQGPRG 515

Query: 73  ---PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRA--------SCSGRAGSAGRLRCSA 121
              P  PPG   +  RP A    G     GP G R            G+ G  G +    
Sbjct: 516 LQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPG 575

Query: 122 AALSAAQRGGPARAQVPPALRTFSPGPAS--PPRASPG--GRPG-SEARGRSGAECARRV 176
                 +RG  A     P  +   PGP     PR SPG  GRPG +   G  GA+     
Sbjct: 576 PPGEDGERG--AEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGP 633

Query: 177 PLHHGPPGASGV-GSERDRKFQ-LHQTPA-RGPPF-PGISGMTRGPVVLSGVNRQHRWPP 232
           P   GPPG  G  GS+     Q L  TP  +GPP  PGI G+                 P
Sbjct: 634 PGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGL-----------------P 676

Query: 233 GASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGL 280
           G+     LG  G E P         PG AG  G PG  G+   S   GL
Sbjct: 677 GSDGP--LGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGL 723



 Score = 28.9 bits (63), Expect = 6.0
 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
            G + L G+Q  P    +       G     G  G    L ++     S G+PGS   R  
Sbjct: 1421 GDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKG----SKGSPGSMGPRGD 1476

Query: 66   APPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPL 101
              P    PP PPG P+       GLR      P PL
Sbjct: 1477 TGPAG--PPGPPGAPAELH----GLRRRRRFVPVPL 1506


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 70/221 (31%), Positives = 85/221 (38%), Gaps = 31/221 (14%)

Query: 46  RRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPP---GGPSRSERPRAGLRPGAFVSPGPLG 102
           R PRGA +A A  +P      P PAPPPPP P     P+R+ R  A     A  SPGP  
Sbjct: 113 RAPRGAPAAAAAAAP-----PPTPAPPPPPAPVAAAAPARAPRAAAAAAT-APPSPGPAQ 166

Query: 103 RRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFS------PGPASPPRAS- 155
                   A  A      AA  + A   GP RA  PPA+          P P +PP+   
Sbjct: 167 PGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAP-PPAVAAREPPLPPPPQPPAPPQQQQ 225

Query: 156 ---PGGRPGSEARGRSGAECARRVPLHH-----GPPGASGVGSERDRKFQL--HQTPARG 205
              P  +P  E         AR V L       G  G +G    R R   L   +  ARG
Sbjct: 226 PPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARG 285

Query: 206 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGE 246
                +     G + L   +R  R PP AS   S  + GGE
Sbjct: 286 ----RLERTRLGALALPRGDRPGRAPPAASARPSRSKRGGE 322



 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 73/262 (27%), Positives = 86/262 (32%), Gaps = 30/262 (11%)

Query: 49  RGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCS 108
           R  +     GS  YR +A    P     P  P R+ R        A   P P        
Sbjct: 80  RAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAP 139

Query: 109 GRAGSAGRL-RCSAAALSAAQRGGPA----RAQVPPALRTFSPGPASPPRASPGGRPGSE 163
             A +  R  R +AAA +A    GPA    RAQ    L    P PA+PP  +P   P   
Sbjct: 140 VAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAP---PAGP 196

Query: 164 ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRG-----P 218
            R    A  AR  PL   P        +     Q  Q P   P  P   G  R      P
Sbjct: 197 RRAPPPAVAAREPPLPPPP--------QPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARP 248

Query: 219 VVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGG------GGPPGGGIP 272
           V L  V R      GA    + G   G     A  R R      G      G  PG   P
Sbjct: 249 VSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRAPP 308

Query: 273 ACSIGPGLARLAALGGLPSILE 294
           A S  P  ++    GG   +LE
Sbjct: 309 AASARPSRSK---RGGEERVLE 327



 Score = 34.7 bits (78), Expect = 0.11
 Identities = 54/181 (29%), Positives = 63/181 (34%), Gaps = 39/181 (21%)

Query: 19  AYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPP------ 72
           A A  AA A +      G A  G    R  R A  A  P +P    +  PPA P      
Sbjct: 146 ARAPRAAAAAATAPPSPGPAQPGP---RAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPP 202

Query: 73  -----------PPPPPGGPSRSERPRAGLRP---GAFVSPGPLGRRAS-------CSGRA 111
                      PP PP  P + + P    +P   G  V  G   R  S         G  
Sbjct: 203 AVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSG 262

Query: 112 GSAGRL-RCSAAAL---SAAQRGGPARAQVPPAL--RTFSPGPASPPRASPGGRPGSEAR 165
           G+ GRL R     L    AA RG   R ++      R   PG A PP AS   RP    R
Sbjct: 263 GAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRA-PPAAS--ARPSRSKR 319

Query: 166 G 166
           G
Sbjct: 320 G 320


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 74/246 (30%), Positives = 87/246 (35%), Gaps = 34/246 (13%)

Query: 50  GAVSAGAPGSPLYRVSAPPPAPP-----PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRR 104
           GA   G PG P      P P  P     P  PPG P     P     PG     G  G R
Sbjct: 232 GAGPTGPPGEP----GDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGAR 287

Query: 105 A--SCSGRAGSAGRLRCSAAALSAAQRGGP-ARAQVPPALRTFSPGPASPPRASPGGRPG 161
                 G  G  G            + G P ++ +  P     + GP  P R  PG R  
Sbjct: 288 GFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP-RGMPGERGR 346

Query: 162 SEARGRSGAECARRVPLHHGP------PGASGVGSERDRKFQLHQTPARGPPFP-GISGM 214
              +G  G   A  +P   GP      PG+SG       K +   T ARGP  P G  G 
Sbjct: 347 LGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGE 406

Query: 215 TR--GPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIP 272
           T   GPV   G+       PGA  +   G  G + P  +   P   G  G  GPPG   P
Sbjct: 407 TGPPGPVGSPGL-------PGAIGTD--GTPGAKGPTGS---PGTSGPPGSAGPPGSPGP 454

Query: 273 ACSIGP 278
             S GP
Sbjct: 455 QGSTGP 460



 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 89/317 (28%), Positives = 109/317 (34%), Gaps = 62/317 (19%)

Query: 30   GRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPS-------- 81
            GR  + G AG        P G    G PG          P P  PP P G +        
Sbjct: 951  GRVGDRGPAGP-------PGGPGDKGDPGED------GQPGPDGPPGPAGTTGQRGIVGM 997

Query: 82   ---RSERPRAGLRPGAFVSPGPLGRRASCS-----------------------GRAGSAG 115
               R ER   GL PG   +PG +G   +                         G AG+ G
Sbjct: 998  PGQRGERGMPGL-PGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDG 1056

Query: 116  RLRCSAAALSAAQRGGPARAQVPPALRT-FSPGPASPP-----RASPGGRPGSEARGRSG 169
                  A      RG P  A +P +     +PGP   P     R  PG R      GR+G
Sbjct: 1057 TPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAG 1116

Query: 170  AECARRVPLHHGPPGASGVGSER-DRKFQLHQ--TPARGPPFPGISGMTRGPVVLSGVNR 226
                R +P   GP G  G   +R DR  + H+  T  +G P P      +G   + G   
Sbjct: 1117 K---RGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFG 1173

Query: 227  QHRWPPG-ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAA 285
              R PPG   PS   G  G   P        + G AG  GPPG   P    GP     AA
Sbjct: 1174 P-RGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAA 1232

Query: 286  LGGLPSILESSRLLPSP 302
            LG +    + S   P P
Sbjct: 1233 LGDIMGHYDESMPDPLP 1249



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 82/303 (27%), Positives = 106/303 (34%), Gaps = 64/303 (21%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP+  +G    P    N       G   ++G  G        P G V  G PG    R  
Sbjct: 618 GPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVG--------PSGPV--GPPGLAGERGE 667

Query: 66  APPPAPPP----PPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSA 121
             PP P      P PPG P    +P     PG   + GPLG R    G  G  G    + 
Sbjct: 668 QGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGE-RGNPGERGEPGITG 726

Query: 122 AALSAAQRG--GPARAQVPPALRTFSPGPASPP--RASPG-----GRPGSE--------- 163
                   G  GP   +  P   + +PG   PP  +  PG     G PG +         
Sbjct: 727 LPGEKGMAGGHGPDGPKGSPG-PSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEK 785

Query: 164 -ARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLS 222
            A G +G + AR +P   GPPG +G   E+                PG  G+   P    
Sbjct: 786 GAEGTAGNDGARGLPGPLGPPGPAGPTGEKGE--------------PGPRGLVGPP---- 827

Query: 223 GVNRQHRWPPGA----SPSRSLGEAGGERP---ARALRRPRAPGRAGGGGPPGGGIPACS 275
                 R  PG+     P+ ++G AG + P         P  PG+ G  G PG    A S
Sbjct: 828 ----GSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGS 883

Query: 276 IGP 278
            GP
Sbjct: 884 PGP 886



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 85/288 (29%), Positives = 100/288 (34%), Gaps = 45/288 (15%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----SAGAPGSPL 61
           GPR + G             L   G   + GA G   K    P G +    S+G PG+P 
Sbjct: 336 GPRGMPG---------ERGRLGPQGAPGQRGAHGMPGK--PGPMGPLGIPGSSGFPGNPG 384

Query: 62  YRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRAGSAGRLRC 119
            +  A P     P  P G      P     PG   SPG  G   +    G  G  G    
Sbjct: 385 MKGEAGPTGARGPEGPQGQRGETGP-----PGPVGSPGLPGAIGTDGTPGAKGPTGSPGT 439

Query: 120 SAAALSAAQRG--GPARAQVPPALRTFSPGPASPP---RASPGGRPGSEA-------RGR 167
           S    SA   G  GP  +  P  +R     P  P     A P G PG           G 
Sbjct: 440 SGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGE 499

Query: 168 SGAECARRVPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNR 226
            G    R  P   GPPG  G  G+  +R F      + G P P  +   RGPV  SG   
Sbjct: 500 EGKRGPRGDPGTVGPPGPVGERGAPGNRGFP----GSDGLPGPKGAQGERGPVGSSGPKG 555

Query: 227 QHRWP-----PGASPSRSL-GEAGGERPARALRRPRAPGRAGGGGPPG 268
               P     PG   +R L G  G + P   L    APG  G  GPPG
Sbjct: 556 SQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPG 603



 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 85/290 (29%), Positives = 97/290 (33%), Gaps = 51/290 (17%)

Query: 4    SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA----GSKLWRRPRGAVSAGAPGS 59
            S GP+ LAG   +P  +       + G    +G  GA    GS     P G   A  P  
Sbjct: 874  SPGPQGLAG---SPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAG 930

Query: 60   PLYRVSAPPPAP--------------PPPPPPGGPSRSERPRAGLRPGAFVSPGPLGR-- 103
            PL       P                 P  PPGGP     P    +PG    PGP G   
Sbjct: 931  PLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTG 990

Query: 104  RASCSGRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPPRAS-PGGRP 160
            +    G  G  G          A   G  GP  A          PGP  PP ++ P G P
Sbjct: 991  QRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKG----PPGPVGPPGSNGPVGEP 1046

Query: 161  GSEARGRSGAECARRVPLHHGPPGASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPV 219
            G E  G +G         + G PG  G VG   DR       PA  P   G  G T GPV
Sbjct: 1047 GPE--GPAG---------NDGTPGRDGAVGERGDRG---DPGPAGLPGSQGAPG-TPGPV 1091

Query: 220  VLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAP-GRAGGGGPPG 268
               G   Q   P    P    G AG     R L  P+ P G  G  G  G
Sbjct: 1092 GAPGDAGQRGDPGSRGPIGPPGRAG----KRGLPGPQGPRGDKGDHGDRG 1137



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 77/271 (28%), Positives = 91/271 (33%), Gaps = 46/271 (16%)

Query: 28  ISGRADEEGAAGAGSKLWRR----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRS 83
           + G A   GA G      +R    P G V  G+PG P          P    P G P  S
Sbjct: 385 MKGEAGPTGARGPEGPQGQRGETGPPGPV--GSPGLP--GAIGTDGTPGAKGPTGSPGTS 440

Query: 84  ERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRT 143
             P +   PG   SPGP G      G  G  G          A  +G P     P  ++ 
Sbjct: 441 GPPGSAGPPG---SPGPQGSTGP-QGIRGQPGDPGVPGFKGEAGPKGEPG----PHGIQ- 491

Query: 144 FSPGPASPP----RASPGGRPGSEAR----GRSGAECARRVPLHHGPPGASGVGSERDRK 195
              GP  PP    +  P G PG+       G  GA   R  P   G PG  G   ER   
Sbjct: 492 ---GPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPV 548

Query: 196 FQLHQTPARGPP-------FPGISGMTRGPVV---------LSGVNRQHR-WPPGASPSR 238
                  ++G P        PG  G+T  P V         L       R  PPG+   R
Sbjct: 549 GSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIR 608

Query: 239 SL-GEAGGERPARALRRPRAPGRAGGGGPPG 268
              G  G   P  +   P  PG AG  G PG
Sbjct: 609 GQPGSMGLPGPKGSSGDPGKPGEAGNAGVPG 639



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 97/343 (28%), Positives = 115/343 (33%), Gaps = 65/343 (18%)

Query: 12  GLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSA-GAPGSPLYRVSAPPP 69
           G   TP A     +   SG     G  G+ G +    P+G     G PG P ++  A P 
Sbjct: 423 GTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPK 482

Query: 70  APPPPPPPGGP--SRSERPRAGLR--PGAFVSPGPLGRRASCSGRA-------------- 111
             P P    GP     E  + G R  PG    PGP+G R +   R               
Sbjct: 483 GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQ 542

Query: 112 GSAGRLRCSAAALSAAQRGGPARAQVPPALR-TFSPGPASP-----PRASPG--GRPG-- 161
           G  G +  S    S    G P    +P A   T +PG   P     P  +PG  GRPG  
Sbjct: 543 GERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPP 602

Query: 162 --------------------SEARGRSGAECARRVPLHHGPPGASG-------VGSERDR 194
                               S   G+ G      VP   G PG  G       VG     
Sbjct: 603 GSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA 662

Query: 195 KFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWP--PGA-SPSRSLGEAG--GERPA 249
             +  Q P     F G+ G   GP    G       P  PGA  P    GE G  GER  
Sbjct: 663 GERGEQGPPGPTGFQGLPG-PPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGE 721

Query: 250 RALR-RPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 290
             +   P   G AGG GP G  G P  S  PG      L G+P
Sbjct: 722 PGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMP 764



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 87/282 (30%), Positives = 102/282 (36%), Gaps = 57/282 (20%)

Query: 28  ISGRADEEGAAGA-GSKLWRRPRGAVSA-------GAPGSPLYRVSAPPPAPPPPPPPGG 79
           I GR    G  G+ G +  R P+G           G PG P    +  PP  P  P P G
Sbjct: 127 IRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDG 186

Query: 80  PSR---------SER----PRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSA 126
            SR          E+     + GL PG   S GP+G R    G  G  G          A
Sbjct: 187 LSRPFSAQMAGLDEKSGLGSQVGLMPG---SVGPVGPRGP-QGLQGQQG---------GA 233

Query: 127 AQRGGPARAQVP-PALRTFSPGPASPPRASPG--GRPGSEAR----GRSGAECARRVPLH 179
              G P     P P     S GP  PP   PG  G PG        G +G+  AR  P  
Sbjct: 234 GPTGPPGEPGDPGPMGPIGSRGPEGPP-GKPGEDGEPGRNGNPGEVGFAGSPGARGFP-- 290

Query: 180 HGPPGASGVGSERDRK-FQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSR 238
            G PG  G+   R  K  +  +     P   G +G T GP+   G       P G  P  
Sbjct: 291 -GAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPT-GPMGAMG-------PLG--PRG 339

Query: 239 SLGEAGGERPARALRRPRAPGRAGGGGPPGG-GIPACSIGPG 279
             GE G   P  A  +  A G  G  GP G  GIP  S  PG
Sbjct: 340 MPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPG 381



 Score = 30.4 bits (67), Expect = 2.1
 Identities = 36/128 (28%), Positives = 43/128 (33%), Gaps = 42/128 (32%)

Query: 148 PASPP-------RASPGGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQ 200
           P +PP         +PGG   +  RGR G +         G PG   V            
Sbjct: 85  PVTPPGECCPVCSQTPGGGNTNFGRGRKGQK---------GEPGLVPV-----------V 124

Query: 201 TPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGR 260
           T  RG P P     ++GP       R  R P G    R      GE        P  PG+
Sbjct: 125 TGIRGRPGPAGPPGSQGP-------RGERGPKGRPGPRGPQGIDGE--------PGVPGQ 169

Query: 261 AGGGGPPG 268
            G  GPPG
Sbjct: 170 PGAPGPPG 177


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 83/294 (28%), Positives = 102/294 (34%), Gaps = 52/294 (17%)

Query: 38  AGAGSKLWRRPRGAVSAGAPGSP----LYRVSAPPPAPPPPPPPGGPSRSERP-RAGLR- 91
           A AG++    P      G PG P    +   + PP  P PP P G P +  +P  AGL  
Sbjct: 21  AAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPG 80

Query: 92  -------PGAFVSPGPLG---RRASCS----------GRAGSAGRLRCSAAALSAAQRGG 131
                   G    PGP G    R S            G  G  G    S        RG 
Sbjct: 81  LPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGP 140

Query: 132 PARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHH-GPPGASGVGS 190
           P  + +P       PGP  PP   P G PG    G +  +C    P    GPPG  G   
Sbjct: 141 PGPSGLPGL-----PGPPGPP--GPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKG 193

Query: 191 ERDRKFQLHQTPARG----PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGE 246
               K +  +    G    P  PG +G+  G V L G       P    P    G  G  
Sbjct: 194 PTGYKGEQGEVGKDGEKGDPGPPGPAGLP-GSVGLQGPRGLRGLPGPLGPPGDRGPIGFR 252

Query: 247 RPARALRRPRAPGRAGG---GGPPGGGIPACSIG-------PGLARLAALGGLP 290
            P      P APG+AG     GP G   P   +G       PG+A  +   G+P
Sbjct: 253 GPPGI---PGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMP 303



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 82/287 (28%), Positives = 98/287 (34%), Gaps = 55/287 (19%)

Query: 6   GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVS 65
           GP  L GL   P    ++      GRA E G AG   +    P  A   G  G   +R S
Sbjct: 331 GPNGLPGL---PGRAGSKGEKGERGRAGELGEAGPSGEPGV-PGDAGMPGERGEAGHRGS 386

Query: 66  APPPAPPPPPPPGGPSRSERPRAGLR-PGAFVSPGPLGRRASCSGRAGSAGRLRCSAAAL 124
           A    P  PP   G    +  +  +  PG    PGP G R     R G  G      AA 
Sbjct: 387 AGALGPQGPPGAPGVRGFQGQKGSMGDPGL---PGPQGLRGDVGDR-GPGG------AAG 436

Query: 125 SAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPG 184
               +G      +P       P     P+   G R     +G  G      V    GPPG
Sbjct: 437 PKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPPG 496

Query: 185 ASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG--ASPSRSLGE 242
             G+                    PG+ G+T  P V           PG  AS  R    
Sbjct: 497 PLGLQG-----------------VPGVPGITGKPGV-----------PGKEASEQRIREL 528

Query: 243 AGG------ERPARALRRPRAPG---RAGGGGPPGGGIPACSIG-PG 279
            GG       + A  LR+P APG   R G  GPPG   P  SIG PG
Sbjct: 529 CGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPG 575



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 43/144 (29%), Positives = 50/144 (34%), Gaps = 40/144 (27%)

Query: 46  RRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRP-GAFVSPGPLGRR 104
           R+P    S G PG       A PP PP PP   G   +  P     P G    PGP G +
Sbjct: 545 RKPLAPGSIGRPGP------AGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQ 598

Query: 105 ASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEA 164
               G  G+AG           A   GP   Q P                 P G PG+  
Sbjct: 599 GD-RGDKGAAG-----------AGLDGPEGDQGPQG---------------PQGVPGTSK 631

Query: 165 RGRSGAECARRVPLHHGPPGASGV 188
            G+ GA      P   GPPG  G+
Sbjct: 632 DGQDGA------PGEPGPPGDPGL 649


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 90/335 (26%), Positives = 109/335 (32%), Gaps = 83/335 (24%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVS----------- 53
            GP+   G    P A   +      G+    G  G  G +  R PRG              
Sbjct: 880  GPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGD 939

Query: 54   --AGAPGS-----PLYRVSAPPPAPPPPPP-----PGGPSRSERPRAGLR-------PGA 94
              AG PG      P      P P  PP PP     PG P   +R   G +       P  
Sbjct: 940  GPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPG--QRGETGFQGKTGPPGPPG 997

Query: 95   FVSP-------GPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVP-----PALR 142
             V P       GP+G R    G  G  G       A     +G P  A +P     P LR
Sbjct: 998  VVGPQGPTGETGPMGERGH-PGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLR 1056

Query: 143  TF-----------------SPGPASPPRASPGGRPGSEARGRSGAECARRVPLHHGPPGA 185
             F                 + GP  PP   P G PG   RG +GA     +P   GP G 
Sbjct: 1057 GFPGDRGLPGPVGALGLKGNEGPPGPP--GPAGSPGE--RGPAGAAGPIGIPGRPGPQGP 1112

Query: 186  SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 245
             G   E+    +      +GP  P      +GPV L         P  A P    GE G 
Sbjct: 1113 PGPAGEKGAPGE------KGPQGPAGRDGLQGPVGL---------PGPAGPVGPPGEDGD 1157

Query: 246  ERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PG 279
            +       +  + G  G  GPPG   P   IG PG
Sbjct: 1158 KGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPG 1192



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 92/350 (26%), Positives = 111/350 (31%), Gaps = 118/350 (33%)

Query: 5   GGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRV 64
           GGPR   G +  PA    E  + I G    EG AG                 PG      
Sbjct: 446 GGPRGEKGQKGEPAII--EPGMLIEGPPGPEGPAGL----------------PG------ 481

Query: 65  SAPPPAPPPPPPPGGPSRSERP-RAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAA 123
             PP    P    G P     P R GL PGA   PGP G       R G  G        
Sbjct: 482 --PPGTMGPTGQVGDPGERGPPGRPGL-PGADGLPGPPGTMLMLPFRFGGGGDAGSKGPM 538

Query: 124 LSAAQRGGPA---------RAQVPPALRTFSPGPASPPRAS------------------- 155
           +SA +    A         R    P   T  PGP  PP +                    
Sbjct: 539 VSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQG 598

Query: 156 ---PGGRPGSEARGRSGAECARRVP---------------------LHHGPPGASG---- 187
              P G+PG   RGR+G++ AR +P                      H G PG SG    
Sbjct: 599 PPGPAGKPGR--RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGP 656

Query: 188 VGSERDRKFQLHQTP--------------ARGPPF----PGISGMTRGPVVLSGVNRQ-H 228
            G + +R       P               +GPP     PG++GM   P     V  Q  
Sbjct: 657 PGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGE 716

Query: 229 RWPPG----------ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 268
             PPG            P  ++G  G + P   L +P  PG  G  GPPG
Sbjct: 717 PGPPGQQGNPGAQGLPGPQGAIGPPGEKGP---LGKPGLPGMPGADGPPG 763



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 80/295 (27%), Positives = 99/295 (33%), Gaps = 36/295 (12%)

Query: 12   GLQRTPAAYANEAALAISGRADEEGAAGA-------------GSKLWRRPRGAVSA---- 54
            G Q  P    N  A+   G   E G  G              G K    P GA       
Sbjct: 1267 GPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPK 1326

Query: 55   GAPGSPLYRVSAPP---PAPPPPPPPGGPSRSERPRAGL----RPGAFVSPGPLGRRASC 107
            G PG    + S  P   P  P PP   GP+  + P         PG   SPGP G     
Sbjct: 1327 GPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGP- 1385

Query: 108  SGRAGSAGRLRCSAAALSAAQRG--GPARAQVPPALRTFSPGPASPPRASPGGRPGSEA- 164
            SG  G  G    +       ++G  G A  + PP       GP  P  A   G+PG +  
Sbjct: 1386 SGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPG----KTGPIGPQGAP--GKPGPDGL 1439

Query: 165  RGRSGAECARRVPLHHGPPGASG-VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSG 223
            RG  G    + +P   GP G  G +G       +    P      PG+ G+  GP    G
Sbjct: 1440 RGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLI-GPPGEQG 1498

Query: 224  VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
                   P     S   GE G   P+  +  P  PG  G  GP G    +   GP
Sbjct: 1499 EKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGP 1553



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 82/292 (28%), Positives = 99/292 (33%), Gaps = 39/292 (13%)

Query: 6    GPRRLAGLQRTPAAYANEAALAISGRADEEGAAGA-GSKLWRRPRGAVSAGAPGSPLYRV 64
            GP    GLQ           +   G   ++G  G  G K  +  +G      P  P   +
Sbjct: 1129 GPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPI 1188

Query: 65   SAPPP--APPPPPPPG-----GPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL 117
              P P  A   P P G     G    E PR    P     PGP+G +    G  G  G  
Sbjct: 1189 GQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGP-----PGPVGLQG-LPGPPGEKGET 1242

Query: 118  RCSAAALSAAQRGGPARAQVPPALRTFSPGP-ASPPRASPG--GRPGSEA-RGRSGAECA 173
                      Q G P     PP  R  S  P A  P+  PG  G PG+   +G  G    
Sbjct: 1243 G------DVGQMGPPG----PPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGE 1292

Query: 174  RRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-------GISGMTRGPVVLSGVNR 226
              +P   GPPG  G   ER  K +   + A GPP P       G  G + GPV   G   
Sbjct: 1293 PGLPGEGGPPGPKG---ERGEKGESGPSGAAGPPGPKGPPGDDGPKG-SPGPVGFPGDPG 1348

Query: 227  QHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 278
                P  A      G+ G +        P   G  G  GPPG   P    GP
Sbjct: 1349 PPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGP 1400



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 68/246 (27%), Positives = 82/246 (33%), Gaps = 26/246 (10%)

Query: 55  GAPGSPLYRVSAPPPAPP-PPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRAS--CSGRA 111
           G PG P  R    P  PP PP PPG      +P      G    PGP G++ +    G  
Sbjct: 673 GLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLP 732

Query: 112 GSAGRLRCSAAALSAAQRGGPAR--AQVPPALRTFSPGPASPPRASPG-GRPGSEA---- 164
           G  G +          + G P    A  PP      PG   PP    G G PG +     
Sbjct: 733 GPQGAIGPPGEKGPLGKPGLPGMPGADGPPG----HPGKEGPPGEKGGQGPPGPQGPIGY 788

Query: 165 ---RGRSGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVL 221
              RG  GA+  R +    G  G  G    +            GPP P       GP   
Sbjct: 789 PGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGR 848

Query: 222 SGVNRQ--HRWPPGASPSRSL----GEAGGERPARALRRPRAP---GRAGGGGPPGGGIP 272
            G N       PPG      +    G  G + P  ++  P  P   G  GG G PG   P
Sbjct: 849 GGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGP 908

Query: 273 ACSIGP 278
               GP
Sbjct: 909 RGQRGP 914



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 63/210 (30%), Positives = 73/210 (34%), Gaps = 36/210 (17%)

Query: 4    SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAG-AGSKLWRRPRGAVSA-GAPGSP- 60
            S GP    G    P            GR  E+GA G AG +      G +   GAPG P 
Sbjct: 1376 SPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPG 1435

Query: 61   ---LYRVSAP--------PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSG 109
               L  +  P         P P  PP P GP        GL PG     GP G +    G
Sbjct: 1436 PDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPP-------GL-PGLKGDSGPKGEK----G 1483

Query: 110  RAGSAGRLRCSAAALSAAQRG--GPARAQVPPALR--TFSPGPASPPRASPGGRPGSE-- 163
              G  G +           RG  GP  +  P   +  T   GP  PP   P G PG    
Sbjct: 1484 HPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPP--GPPGLPGPPGP 1541

Query: 164  --ARGRSGAECARRVPLHHGPPGASGVGSE 191
              A+G SG    +    H GPPG  G   E
Sbjct: 1542 KGAKGSSGPTGPKGEAGHPGPPGPPGPPGE 1571


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,361,897
Number of Sequences: 37866
Number of extensions: 1655606
Number of successful extensions: 35595
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 1920
Number of HSP's that attempted gapping in prelim test: 12853
Number of HSP's gapped (non-prelim): 12115
length of query: 308
length of database: 18,247,518
effective HSP length: 102
effective length of query: 206
effective length of database: 14,385,186
effective search space: 2963348316
effective search space used: 2963348316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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