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Search of human proteins with 169168202
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
(460 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 931 0.0
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 929 0.0
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 929 0.0
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 66 6e-11
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 66 6e-11
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 65 1e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 64 3e-10
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 59 1e-08
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 58 2e-08
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 58 2e-08
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 58 2e-08
gi|48762934 alpha 2 type I collagen [Homo sapiens] 57 3e-08
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 57 5e-08
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 55 1e-07
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 55 1e-07
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 55 1e-07
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 54 4e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 53 5e-07
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 53 5e-07
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 53 5e-07
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 52 1e-06
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens] 52 1e-06
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 52 1e-06
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 52 1e-06
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 52 1e-06
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 52 1e-06
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 52 1e-06
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 52 1e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 52 1e-06
gi|40807477 retinoic acid induced 1 [Homo sapiens] 52 1e-06
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 931 bits (2405), Expect = 0.0
Identities = 460/460 (100%), Positives = 460/460 (100%)
Query: 1 MTLRAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGR 60
MTLRAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGR
Sbjct: 1 MTLRAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGR 60
Query: 61 ARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGE 120
ARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGE
Sbjct: 61 ARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGE 120
Query: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN
Sbjct: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
Query: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG
Sbjct: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
Query: 241 GKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARP 300
GKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARP
Sbjct: 241 GKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARP 300
Query: 301 CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSD 360
CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSD
Sbjct: 301 CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSD 360
Query: 361 AARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGREL 420
AARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGREL
Sbjct: 361 AARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGREL 420
Query: 421 LGSEPRNGTLESICSLHVGNGARAHVLELHPRSLSQYSHL 460
LGSEPRNGTLESICSLHVGNGARAHVLELHPRSLSQYSHL
Sbjct: 421 LGSEPRNGTLESICSLHVGNGARAHVLELHPRSLSQYSHL 460
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 929 bits (2400), Expect = 0.0
Identities = 459/460 (99%), Positives = 460/460 (100%)
Query: 1 MTLRAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGR 60
MTLRAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGR
Sbjct: 1 MTLRAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGR 60
Query: 61 ARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGE 120
ARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGE
Sbjct: 61 ARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGE 120
Query: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN
Sbjct: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
Query: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG
Sbjct: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
Query: 241 GKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARP 300
GKGQRAAGAERVL+NGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARP
Sbjct: 241 GKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARP 300
Query: 301 CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSD 360
CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSD
Sbjct: 301 CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSD 360
Query: 361 AARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGREL 420
AARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGREL
Sbjct: 361 AARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGREL 420
Query: 421 LGSEPRNGTLESICSLHVGNGARAHVLELHPRSLSQYSHL 460
LGSEPRNGTLESICSLHVGNGARAHVLELHPRSLSQYSHL
Sbjct: 421 LGSEPRNGTLESICSLHVGNGARAHVLELHPRSLSQYSHL 460
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 929 bits (2400), Expect = 0.0
Identities = 459/460 (99%), Positives = 460/460 (100%)
Query: 1 MTLRAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGR 60
MTLRAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGR
Sbjct: 1 MTLRAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGR 60
Query: 61 ARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGE 120
ARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGE
Sbjct: 61 ARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGE 120
Query: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN
Sbjct: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
Query: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG
Sbjct: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
Query: 241 GKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARP 300
GKGQRAAGAERVL+NGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARP
Sbjct: 241 GKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARP 300
Query: 301 CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSD 360
CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSD
Sbjct: 301 CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSD 360
Query: 361 AARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGREL 420
AARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGREL
Sbjct: 361 AARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGREL 420
Query: 421 LGSEPRNGTLESICSLHVGNGARAHVLELHPRSLSQYSHL 460
LGSEPRNGTLESICSLHVGNGARAHVLELHPRSLSQYSHL
Sbjct: 421 LGSEPRNGTLESICSLHVGNGARAHVLELHPRSLSQYSHL 460
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 66.2 bits (160), Expect = 6e-11
Identities = 97/350 (27%), Positives = 119/350 (34%), Gaps = 29/350 (8%)
Query: 48 VTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAG 107
+ GA + PG A A G G + A LG + T P G + P G
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474
Query: 108 PLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGR 166
P G AGE G GA G+ V PPG F G + P+ +PG R
Sbjct: 475 PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDG-LAGPKGAPGER 533
Query: 167 RGRPLGAARGTGLNPGL--SPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFG--AP 222
L +G +PG P L RG + R D + AP G P
Sbjct: 534 GPSGLAGPKGANGDPGRPGEPGLPGARG-LTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 592
Query: 223 RGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGL---AGGVEPPGWSRER 279
+G+R +P FP G G+ E+ L G R LPG G PPG
Sbjct: 593 QGARG-QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG-LPGKDGETGAAGPPG----P 646
Query: 280 AGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFV 339
AG R P P QG P P PP + PG A PG V
Sbjct: 647 AGPAGERGEQGAP------GPSGFQGLPG-----PPGPPGEGGKPGDQGVPGEAGAPGLV 695
Query: 340 TLAFRSRLPLLR-SPGPEGTSDAARAP-APGLRDRDLRAAPPRPRPSQRP 387
P R SPG +G P PG + P P +Q P
Sbjct: 696 GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 745
Score = 60.8 bits (146), Expect = 2e-09
Identities = 100/383 (26%), Positives = 126/383 (32%), Gaps = 62/383 (16%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRR-GGLRSRTDPA 103
+P + G PG A + G G + E + G+ +GPR G R RT PA
Sbjct: 280 TPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGP-MGPRGLPGERGRTGPA 338
Query: 104 FGAG------------PLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFV 150
AG P V G G G+PGA G+ P A P G
Sbjct: 339 GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQG-------- 390
Query: 151 FPPGKTSAP-RPSPGGRRGRP----LGAARGTGLNPGLS-----PRLQEPRGHQSAR--- 197
P G+ P P P G G P + A+G+ PG++ P + P G Q A
Sbjct: 391 -PRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 449
Query: 198 ----RTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEAS--GGKGQRAAGAER 251
+T AG+ + P P+G+ + GK GG G ER
Sbjct: 450 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER 509
Query: 252 VLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGL-----SRDSPQVPRSGSWARPCREQGH 306
RG PG G P G ER +GL + P P G
Sbjct: 510 GAPGNRG----FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR 565
Query: 307 PAVLALQSPAPPSLARAAARRRGP----GGATEPGFVTLAFRSRLPLLRSPGPEGTSDAA 362
P Q PS A R GP G +PG + F PG G
Sbjct: 566 PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG--VMGFPGPKGANGEPGKAGEKGLP 623
Query: 363 RAPA----PGLRDRDLRAAPPRP 381
AP PG A PP P
Sbjct: 624 GAPGLRGLPGKDGETGAAGPPGP 646
Score = 59.3 bits (142), Expect = 7e-09
Identities = 106/369 (28%), Positives = 122/369 (33%), Gaps = 69/369 (18%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSAT--LGPRRGGLRSRTDPAFGAG 107
GA + G A Q+GD GA + + + G Q T GP+ G R P G
Sbjct: 840 GADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK--GARGAQGPPGATG 897
Query: 108 PLPLVSRLGHAGERGSPG-------AGDVNPVSA---SSPPGRPDPLLLTTFVFPPGKTS 157
R+G G G+PG +G P A S PPGR L PPG+
Sbjct: 898 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG 957
Query: 158 AP-RPSPGGRRGRP----LGAARGTGLNPGLS-----PRLQEPRGHQSARRTDTASRAGW 207
P P G G P L RG PG P L P G + AS
Sbjct: 958 EPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS---- 1013
Query: 208 ATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLA 267
R P P G L AG+ P G G GP PG
Sbjct: 1014 GDRGPP-------GPVGPPGLTGPAGE-PGREGSPG------------ADGP----PGRD 1049
Query: 268 GGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARR 327
G G R GA + +P P S A P +QG Q P PS A
Sbjct: 1050 GAAGVKG-DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1108
Query: 328 RGP-------GGATEPGFVTL-AFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPP 379
+GP G A EPG L R L PGP G S A P A P
Sbjct: 1109 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGP--------AGPS 1160
Query: 380 RPRPSQRPV 388
PR PV
Sbjct: 1161 GPRGPPGPV 1169
Score = 57.4 bits (137), Expect = 3e-08
Identities = 97/368 (26%), Positives = 117/368 (31%), Gaps = 87/368 (23%)
Query: 71 GARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPG----A 126
G E+A LG +GP G R PA GP G +G+PG
Sbjct: 185 GGFDEKAGGAQLGVMQGPMGPM--GPRGPPGPAGAPGP---------QGFQGNPGEPGEP 233
Query: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKT----SAPRPSPGGRRGRP-LGAARGTGLNP 181
G P+ PPG PPGK A +P G RG P ARG P
Sbjct: 234 GVSGPMGPRGPPG------------PPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP 281
Query: 182 GLSPRLQEPRGH-----------------QSARRTDTASRAGWATRRAPSRRRNFGAPRG 224
GL P ++ RG+ +S + S R P R G P G
Sbjct: 282 GL-PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTG-PAG 339
Query: 225 SRRLRPDAGK-----------------FPEASGGKGQRAAGAERVLNNGRGPRSRLPGLA 267
+ R + G+ FP A G KG+ R +GPR PG
Sbjct: 340 AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE-PGTP 398
Query: 268 GGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARR 327
G P G S G+ G P G P P P + A
Sbjct: 399 GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP----GFP------GPRGPPGPQGATGP 448
Query: 328 RGPGGAT-EPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAP----PRPR 382
GP G T EPG F+ PGP G A PA R R P P
Sbjct: 449 LGPKGQTGEPGIA--GFKGEQGPKGEPGPAG-PQGAPGPAGEEGKRGARGEPGGVGPIGP 505
Query: 383 PSQRPVSG 390
P +R G
Sbjct: 506 PGERGAPG 513
Score = 46.6 bits (109), Expect = 5e-05
Identities = 97/382 (25%), Positives = 120/382 (31%), Gaps = 69/382 (18%)
Query: 24 PGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGARR--------- 74
PG+ + + G A A P + G PG + QG G R
Sbjct: 674 PGEGGKPGDQGVPGEAGA----PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG 729
Query: 75 ERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGA-GDVNPVS 133
+ A+ G A P G+ A AGP +G G G+PG G
Sbjct: 730 PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 789
Query: 134 ASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEP--R 191
PPG V PPG + G RG P RG PG + P
Sbjct: 790 PIGPPGPAGANGEKGEVGPPGPAGS-----AGARGAP--GERGETGPPGPAGFAGPPGAD 842
Query: 192 GHQSAR-RTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAE 250
G A+ A + G A P P+G + +G KG R A
Sbjct: 843 GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV----------TGPKGARGA--- 889
Query: 251 RVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG----LSRDSPQVPRSGSWARPCREQGH 306
G + PG AG V PPG + G +D P+ R S P G
Sbjct: 890 ----QGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS--GPPGRAGE 943
Query: 307 PAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEG-TSDAARAP 365
P LQ PA P + GP GA P PGP+G
Sbjct: 944 P---GLQGPAGPPGEKGEPGDDGPSGAEGP----------------PGPQGLAGQRGIVG 984
Query: 366 APGLRDRDLRAAPPRPRPSQRP 387
PG R R P P PS P
Sbjct: 985 LPGQRGE--RGFPGLPGPSGEP 1004
Score = 45.8 bits (107), Expect = 8e-05
Identities = 90/360 (25%), Positives = 112/360 (31%), Gaps = 41/360 (11%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P G PG AA G G + +R G + A P + G R T P
Sbjct: 740 PGAQGPPGLQGMPGERGAA---GIAGPKGDRGDVGEKGPEGA---PGKDGGRGLTGPIGP 793
Query: 106 AGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP-RPSPG 164
GP G G G AG A G P F PPG P
Sbjct: 794 PGPAGANGEKGEVGPPGP--AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQ 851
Query: 165 GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRG 224
G G+ A P +P Q P G + A AT P G P
Sbjct: 852 GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT-GFPGAAGRVGPPGS 910
Query: 225 SRRLRPDAGKFPEASGG-KGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG 283
+ P P G KG R ++G R+ PGL G PPG E G
Sbjct: 911 NGNPGPPGPPGPSGKDGPKGARG-------DSGPPGRAGEPGLQGPAGPPGEKGEPGDDG 963
Query: 284 LS-RDSPQVPRSGSWARPC-------REQGHPAVLALQSPAPPSLARAAARRRGPGGATE 335
S + P P+ + R E+G P + A A+ RGP G
Sbjct: 964 PSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVG 1023
Query: 336 PGFVTLAFRSRLPLLRSPGPEGTSDAARAP----APGLR----DRDLRAAPPRPRPSQRP 387
P +T PG EG+ A P A G++ + AP P P P
Sbjct: 1024 PPGLT-------GPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1076
Score = 33.1 bits (74), Expect = 0.54
Identities = 49/154 (31%), Positives = 55/154 (35%), Gaps = 28/154 (18%)
Query: 49 TGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGP--RRG-----GLRSRTD 101
TGA PG + G G + +R A + G + GP RG G R
Sbjct: 1061 TGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS-GPAGARGIQGPQGPRGDKG 1119
Query: 102 PAFGAGPLPLVSRLGHAGERGSPG-------AGDVNPVSASSPPGRPDPLLLTTFVFPPG 154
A G L G G +G PG G P S P G P P V P G
Sbjct: 1120 EAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP------VGPSG 1173
Query: 155 KTSA---PRP-SPGGRRGR--PLGAARGTGLNPG 182
K A P P P G RGR G A G NPG
Sbjct: 1174 KDGANGIPGPIGPPGPRGRSGETGPAGPPG-NPG 1206
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 66.2 bits (160), Expect = 6e-11
Identities = 97/350 (27%), Positives = 119/350 (34%), Gaps = 29/350 (8%)
Query: 48 VTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAG 107
+ GA + PG A A G G + A LG + T P G + P G
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 405
Query: 108 PLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGR 166
P G AGE G GA G+ V PPG F G + P+ +PG R
Sbjct: 406 PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDG-LAGPKGAPGER 464
Query: 167 RGRPLGAARGTGLNPGL--SPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFG--AP 222
L +G +PG P L RG + R D + AP G P
Sbjct: 465 GPSGLAGPKGANGDPGRPGEPGLPGARG-LTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 523
Query: 223 RGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGL---AGGVEPPGWSRER 279
+G+R +P FP G G+ E+ L G R LPG G PPG
Sbjct: 524 QGARG-QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG-LPGKDGETGAAGPPG----P 577
Query: 280 AGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFV 339
AG R P P QG P P PP + PG A PG V
Sbjct: 578 AGPAGERGEQGAP------GPSGFQGLPG-----PPGPPGEGGKPGDQGVPGEAGAPGLV 626
Query: 340 TLAFRSRLPLLR-SPGPEGTSDAARAP-APGLRDRDLRAAPPRPRPSQRP 387
P R SPG +G P PG + P P +Q P
Sbjct: 627 GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 676
Score = 60.8 bits (146), Expect = 2e-09
Identities = 100/383 (26%), Positives = 126/383 (32%), Gaps = 62/383 (16%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRR-GGLRSRTDPA 103
+P + G PG A + G G + E + G+ +GPR G R RT PA
Sbjct: 211 TPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGP-MGPRGLPGERGRTGPA 269
Query: 104 FGAG------------PLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFV 150
AG P V G G G+PGA G+ P A P G
Sbjct: 270 GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQG-------- 321
Query: 151 FPPGKTSAP-RPSPGGRRGRP----LGAARGTGLNPGLS-----PRLQEPRGHQSAR--- 197
P G+ P P P G G P + A+G+ PG++ P + P G Q A
Sbjct: 322 -PRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 380
Query: 198 ----RTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEAS--GGKGQRAAGAER 251
+T AG+ + P P+G+ + GK GG G ER
Sbjct: 381 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER 440
Query: 252 VLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGL-----SRDSPQVPRSGSWARPCREQGH 306
RG PG G P G ER +GL + P P G
Sbjct: 441 GAPGNRG----FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR 496
Query: 307 PAVLALQSPAPPSLARAAARRRGP----GGATEPGFVTLAFRSRLPLLRSPGPEGTSDAA 362
P Q PS A R GP G +PG + F PG G
Sbjct: 497 PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG--VMGFPGPKGANGEPGKAGEKGLP 554
Query: 363 RAPA----PGLRDRDLRAAPPRP 381
AP PG A PP P
Sbjct: 555 GAPGLRGLPGKDGETGAAGPPGP 577
Score = 59.3 bits (142), Expect = 7e-09
Identities = 106/369 (28%), Positives = 122/369 (33%), Gaps = 69/369 (18%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSAT--LGPRRGGLRSRTDPAFGAG 107
GA + G A Q+GD GA + + + G Q T GP+ G R P G
Sbjct: 771 GADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK--GARGAQGPPGATG 828
Query: 108 PLPLVSRLGHAGERGSPG-------AGDVNPVSA---SSPPGRPDPLLLTTFVFPPGKTS 157
R+G G G+PG +G P A S PPGR L PPG+
Sbjct: 829 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG 888
Query: 158 AP-RPSPGGRRGRP----LGAARGTGLNPGLS-----PRLQEPRGHQSARRTDTASRAGW 207
P P G G P L RG PG P L P G + AS
Sbjct: 889 EPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS---- 944
Query: 208 ATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLA 267
R P P G L AG+ P G G GP PG
Sbjct: 945 GDRGPP-------GPVGPPGLTGPAGE-PGREGSPG------------ADGP----PGRD 980
Query: 268 GGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARR 327
G G R GA + +P P S A P +QG Q P PS A
Sbjct: 981 GAAGVKG-DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1039
Query: 328 RGP-------GGATEPGFVTL-AFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPP 379
+GP G A EPG L R L PGP G S A P A P
Sbjct: 1040 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGP--------AGPS 1091
Query: 380 RPRPSQRPV 388
PR PV
Sbjct: 1092 GPRGPPGPV 1100
Score = 57.4 bits (137), Expect = 3e-08
Identities = 97/368 (26%), Positives = 117/368 (31%), Gaps = 87/368 (23%)
Query: 71 GARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPG----A 126
G E+A LG +GP G R PA GP G +G+PG
Sbjct: 116 GGFDEKAGGAQLGVMQGPMGPM--GPRGPPGPAGAPGP---------QGFQGNPGEPGEP 164
Query: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKT----SAPRPSPGGRRGRP-LGAARGTGLNP 181
G P+ PPG PPGK A +P G RG P ARG P
Sbjct: 165 GVSGPMGPRGPPG------------PPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP 212
Query: 182 GLSPRLQEPRGH-----------------QSARRTDTASRAGWATRRAPSRRRNFGAPRG 224
GL P ++ RG+ +S + S R P R G P G
Sbjct: 213 GL-PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTG-PAG 270
Query: 225 SRRLRPDAGK-----------------FPEASGGKGQRAAGAERVLNNGRGPRSRLPGLA 267
+ R + G+ FP A G KG+ R +GPR PG
Sbjct: 271 AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE-PGTP 329
Query: 268 GGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARR 327
G P G S G+ G P G P P P + A
Sbjct: 330 GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP----GFP------GPRGPPGPQGATGP 379
Query: 328 RGPGGAT-EPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAP----PRPR 382
GP G T EPG F+ PGP G A PA R R P P
Sbjct: 380 LGPKGQTGEPGIA--GFKGEQGPKGEPGPAG-PQGAPGPAGEEGKRGARGEPGGVGPIGP 436
Query: 383 PSQRPVSG 390
P +R G
Sbjct: 437 PGERGAPG 444
Score = 46.6 bits (109), Expect = 5e-05
Identities = 97/382 (25%), Positives = 120/382 (31%), Gaps = 69/382 (18%)
Query: 24 PGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGARR--------- 74
PG+ + + G A A P + G PG + QG G R
Sbjct: 605 PGEGGKPGDQGVPGEAGA----PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG 660
Query: 75 ERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGA-GDVNPVS 133
+ A+ G A P G+ A AGP +G G G+PG G
Sbjct: 661 PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 720
Query: 134 ASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEP--R 191
PPG V PPG + G RG P RG PG + P
Sbjct: 721 PIGPPGPAGANGEKGEVGPPGPAGS-----AGARGAP--GERGETGPPGPAGFAGPPGAD 773
Query: 192 GHQSAR-RTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAE 250
G A+ A + G A P P+G + +G KG R A
Sbjct: 774 GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV----------TGPKGARGA--- 820
Query: 251 RVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG----LSRDSPQVPRSGSWARPCREQGH 306
G + PG AG V PPG + G +D P+ R S P G
Sbjct: 821 ----QGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS--GPPGRAGE 874
Query: 307 PAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEG-TSDAARAP 365
P LQ PA P + GP GA P PGP+G
Sbjct: 875 P---GLQGPAGPPGEKGEPGDDGPSGAEGP----------------PGPQGLAGQRGIVG 915
Query: 366 APGLRDRDLRAAPPRPRPSQRP 387
PG R R P P PS P
Sbjct: 916 LPGQRGE--RGFPGLPGPSGEP 935
Score = 45.8 bits (107), Expect = 8e-05
Identities = 90/360 (25%), Positives = 112/360 (31%), Gaps = 41/360 (11%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P G PG AA G G + +R G + A P + G R T P
Sbjct: 671 PGAQGPPGLQGMPGERGAA---GIAGPKGDRGDVGEKGPEGA---PGKDGGRGLTGPIGP 724
Query: 106 AGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP-RPSPG 164
GP G G G AG A G P F PPG P
Sbjct: 725 PGPAGANGEKGEVGPPGP--AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQ 782
Query: 165 GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRG 224
G G+ A P +P Q P G + A AT P G P
Sbjct: 783 GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT-GFPGAAGRVGPPGS 841
Query: 225 SRRLRPDAGKFPEASGG-KGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG 283
+ P P G KG R ++G R+ PGL G PPG E G
Sbjct: 842 NGNPGPPGPPGPSGKDGPKGARG-------DSGPPGRAGEPGLQGPAGPPGEKGEPGDDG 894
Query: 284 LS-RDSPQVPRSGSWARPC-------REQGHPAVLALQSPAPPSLARAAARRRGPGGATE 335
S + P P+ + R E+G P + A A+ RGP G
Sbjct: 895 PSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVG 954
Query: 336 PGFVTLAFRSRLPLLRSPGPEGTSDAARAP----APGLR----DRDLRAAPPRPRPSQRP 387
P +T PG EG+ A P A G++ + AP P P P
Sbjct: 955 PPGLT-------GPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1007
Score = 33.1 bits (74), Expect = 0.54
Identities = 49/154 (31%), Positives = 55/154 (35%), Gaps = 28/154 (18%)
Query: 49 TGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGP--RRG-----GLRSRTD 101
TGA PG + G G + +R A + G + GP RG G R
Sbjct: 992 TGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS-GPAGARGIQGPQGPRGDKG 1050
Query: 102 PAFGAGPLPLVSRLGHAGERGSPG-------AGDVNPVSASSPPGRPDPLLLTTFVFPPG 154
A G L G G +G PG G P S P G P P V P G
Sbjct: 1051 EAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP------VGPSG 1104
Query: 155 KTSA---PRP-SPGGRRGR--PLGAARGTGLNPG 182
K A P P P G RGR G A G NPG
Sbjct: 1105 KDGANGIPGPIGPPGPRGRSGETGPAGPPG-NPG 1137
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 65.5 bits (158), Expect = 1e-10
Identities = 99/322 (30%), Positives = 116/322 (36%), Gaps = 58/322 (18%)
Query: 56 PTPGRARAAP-QQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSR 114
P P AP Q G+ G + ER A G GG P G+GP
Sbjct: 806 PGPAGFPGAPGQNGEPGGKGERGAPGEKG---------EGGPPGVAGPPGGSGPAGPPGP 856
Query: 115 LGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP-RPSPGGRRGR--PL 171
G GERGSPG P +A P R P PPG P P P G G+ P
Sbjct: 857 QGVKGERGSPG----GPGAAGFPGARGLP-------GPPGSNGNPGPPGPSGSPGKDGPP 905
Query: 172 GAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAP--------SRRRNFGAPR 223
G A TG PG SP + P+G + + + S AP + R P
Sbjct: 906 GPAGNTGA-PG-SPGVSGPKG-DAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPP 962
Query: 224 GSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGP--RSRLPGLAGGVEPPGWSRERAG 281
G P P G KG+ L+ RGP LPGLAG PG
Sbjct: 963 G----MPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGS 1018
Query: 282 AGL-SRD-SP----QVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATE 335
GL RD SP +GS P GHP PA S R + GP GA
Sbjct: 1019 DGLPGRDGSPGGKGDRGENGSPGAP-GAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPG 1077
Query: 336 PGFVTLAFRSRLPLLRSPGPEG 357
P SR +PGP+G
Sbjct: 1078 PA------GSR----GAPGPQG 1089
Score = 63.5 bits (153), Expect = 4e-10
Identities = 98/355 (27%), Positives = 114/355 (32%), Gaps = 46/355 (12%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAF 104
+P G A + PG A ++G G R AA G GP G+R
Sbjct: 487 APGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP---GMRGMPGSPG 543
Query: 105 GAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPG 164
G G G GE G PG P S P G+P FP K + P
Sbjct: 544 GPGSDGKPGPPGSQGESGRPG-----PPGPSGPRGQPG-----VMGFPGPKGNDGAPGKN 593
Query: 165 GRRGRP--LGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAP 222
G RG P G G N P+ + DT + P G P
Sbjct: 594 GERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGT----GGP 649
Query: 223 RGSRRL------RPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWS 276
G + DAG P A GGKG A ER G + PGL GG PPG
Sbjct: 650 PGENGKPGEPGPKGDAGA-PGAPGGKGDAGAPGER----GPPGLAGAPGLRGGAGPPGPE 704
Query: 277 RERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEP 336
+ AG G P G L SP P GPG P
Sbjct: 705 GGKGAAGPPGPPGAAGTPGLQGMPGERGG------LGSPGPKG---DKGEPGGPGADGVP 755
Query: 337 GFVTLAFRSRLPLLRSPGPEG-TSDAARAPAPGLRDRDLRAAPPRPRPSQRPVSG 390
G R + PGP G D APGL A PR P +R +G
Sbjct: 756 G--KDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG----IAGPRGSPGERGETG 804
Score = 56.6 bits (135), Expect = 5e-08
Identities = 96/357 (26%), Positives = 120/357 (33%), Gaps = 45/357 (12%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P GA G A G GA+ E S G A P G R
Sbjct: 434 PGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGP 493
Query: 106 AGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRP----DPLLLTTFVFPPGKTSAPRP 161
AGP + G AGERG+P G P A+ PGR P + P G S +P
Sbjct: 494 AGPNGIPGEKGPAGERGAP--GPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKP 551
Query: 162 SPGGRRGR-----PLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRR 216
P G +G P G + G PG+ P+G+ AP +
Sbjct: 552 GPPGSQGESGRPGPPGPSGPRG-QPGVM-GFPGPKGNDG----------------APGKN 593
Query: 217 RNFGAPRGSRRLRPDAGKFPEA--SGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPG 274
G P G P GK E G G G ++ GP+ L GL G PPG
Sbjct: 594 GERGGPGGPGPQGP-PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG-LQGLPGTGGPPG 651
Query: 275 WSRERAGAGLSRD--SPQVPRSGSWARPCREQGHPAVLALQS-------PAPPSLARAAA 325
+ + G D +P P A E+G P + P P AA
Sbjct: 652 ENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAG 711
Query: 326 RRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAP-APGLRDRDLRAAPPRP 381
PG A PG + L SPGP+G P A G+ +D P P
Sbjct: 712 PPGPPGAAGTPGLQGMP--GERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGP 766
Score = 54.3 bits (129), Expect = 2e-07
Identities = 86/293 (29%), Positives = 104/293 (35%), Gaps = 47/293 (16%)
Query: 94 GGLRSRTDPAFGAGPLPLVSRLGHAGERGSPG----AGDVNPVSASSPPGRPDPLLLTTF 149
GGL PA GP GH G GSPG G+ S PPG P
Sbjct: 167 GGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGA------ 220
Query: 150 VFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLS-----PRLQEPRGH-----QSARRT 199
+ P G A + GR GRP RG PG+ P +GH ++ +
Sbjct: 221 IGPSG--PAGKDGESGRPGRP--GERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG 276
Query: 200 DTASRAGWATRRAPSRRRNFG--APRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGR 257
+T + P G PRG+ R G P A+G +G A
Sbjct: 277 ETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPG-LPGAAGARGNDGARGSDGQPGPP 335
Query: 258 GPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAP 317
GP PG AG PG E AG S S P P QGH A P P
Sbjct: 336 GP----PGTAGFPGSPGAKGEVGPAG-SPGSNGAPGQRGEPGP---QGHAG--AQGPPGP 385
Query: 318 PSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLR 370
P + + + G A PG L +R P PGP G + APGLR
Sbjct: 386 PGINGSPGGKGEMGPAGIPGAPGL-MGARGP----PGPAGANG-----APGLR 428
Score = 52.8 bits (125), Expect = 7e-07
Identities = 84/337 (24%), Positives = 108/337 (32%), Gaps = 50/337 (14%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPL 109
GAA PG A QG G R + G + GP G+ + P GP+
Sbjct: 708 GAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPI 767
Query: 110 PLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP--RPSPGGRR 167
G G++G GA + + + P G P T P G AP PGG+
Sbjct: 768 GPPGPAGQPGDKGEGGAPGLPGI--AGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKG 825
Query: 168 GRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRR 227
R +G G PG+ A G + P + RGS
Sbjct: 826 ERGAPGEKGEGGPPGV------------------AGPPGGSGPAGPPGPQGVKGERGSPG 867
Query: 228 LRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRD 287
P A FP A G G + N G S PG G P G + G+S
Sbjct: 868 -GPGAAGFPGARGLPGPPGSNG----NPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGP 922
Query: 288 SPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARR--RGPGGATEPGFVTLAFRS 345
+ G P QG P +P P +A R GP G P
Sbjct: 923 KGDAGQPGEKGSP-GAQGPPG-----APGPLGIAGITGARGLAGPPGMPGP--------- 967
Query: 346 RLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPR 382
SPGP+G + PG PP P+
Sbjct: 968 ----RGSPGPQGVK--GESGKPGANGLSGERGPPGPQ 998
Score = 52.0 bits (123), Expect = 1e-06
Identities = 89/343 (25%), Positives = 111/343 (32%), Gaps = 66/343 (19%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG A G G + S G Q P + G P GP + G
Sbjct: 173 PGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGE 232
Query: 118 AGERGSPG-AGDVNPVSASSPPGRPD-PLLLTTFVF-----PPGKTSAP----------- 159
+G G PG G P P G P P + F G+T AP
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 160 --RPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRR 217
P P G RG P G PGL P RG+ AR +D G P
Sbjct: 293 NGAPGPMGPRGAP-----GERGRPGL-PGAAGARGNDGARGSD-----GQPGPPGPPGTA 341
Query: 218 NFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSR 277
F G++ AG P ++G GQR + +GP PG G PG
Sbjct: 342 GFPGSPGAKGEVGPAGS-PGSNGAPGQRGEPGPQGHAGAQGP----PGPPGINGSPGGKG 396
Query: 278 ERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPG 337
E AG+ G P ++ + P P+ A A R GGA EPG
Sbjct: 397 EMGPAGI-------------------PGAPGLMGARGPPGPAGANGAPGLR--GGAGEPG 435
Query: 338 FVTLAFRSRLPLLRSPGPEGTSDAARAP-APGLRDRDLRAAPP 379
+ PGP G A P PG + D + P
Sbjct: 436 --------KNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSP 470
Score = 50.4 bits (119), Expect = 3e-06
Identities = 93/354 (26%), Positives = 117/354 (33%), Gaps = 64/354 (18%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPL 109
GA PG AA +G+ GAR G P G + PA G
Sbjct: 303 GAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG-- 360
Query: 110 PLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGR 169
G G+RG P G A PPG PPG SPGG+
Sbjct: 361 ----SNGAPGQRGEP--GPQGHAGAQGPPG------------PPGING----SPGGK--- 395
Query: 170 PLGAARGTGLNPGLSPRLQEPRGHQS-ARRTDTASRAGWATRRAPSRRRNFGAPRGSRRL 228
G G+ PG +P L RG A G A + + PRG R
Sbjct: 396 --GEMGPAGI-PG-APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGE 451
Query: 229 RPDAGKFPEASGGKGQRAAGAERVLNN--GRGPRSRLPGLAGGVEPPGWSRERAGAG-LS 285
G P A G G+ + E N G PG G P G E+ AG
Sbjct: 452 AGIPG-VPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERG 510
Query: 286 RDSPQVPRSGSWARPCRE--QGHPAVLALQ----------SPAPPSLARAAARRRGPGGA 333
P PR G+ P R+ G P + + P PP ++ + R GP G
Sbjct: 511 APGPAGPR-GAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPG-SQGESGRPGPPGP 568
Query: 334 TEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPRPSQRP 387
+ P R + ++ PGP+G APG R P P P P
Sbjct: 569 SGP-------RGQPGVMGFPGPKGNDG-----APGKNGE--RGGPGGPGPQGPP 608
Score = 47.4 bits (111), Expect = 3e-05
Identities = 83/307 (27%), Positives = 99/307 (32%), Gaps = 42/307 (13%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAF 104
SP V+G + PG + QG GA A G + P G R P
Sbjct: 916 SPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQG 975
Query: 105 GAGPLPLVSRLGHAGERGSPG-AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP--RP 161
G G +GERG PG G + PGR PG P
Sbjct: 976 VKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDG---------NPGSDGLPGRDG 1026
Query: 162 SPGGRRGRPLGAARGTGLNPGL--SPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNF 219
SPGG+ R + G PG P P G R + AG A P+ R
Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDR--GESGPAGPAGAPGPAGSRGA 1084
Query: 220 GAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSR-----LPGLAGGVEPPG 274
P+G R + + G+ A+G KG R GP + PG AG P G
Sbjct: 1085 PGPQGPRGDKGETGE-RGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVG 1143
Query: 275 WSRERAGAGLSRD----SPQVPRSGSWARPCR-EQGHPAVLALQSPAPPSLARAAARRRG 329
S G S P PR R GHP P PP G
Sbjct: 1144 PSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPG-----QPGPP----------G 1188
Query: 330 PGGATEP 336
P GA P
Sbjct: 1189 PPGAPGP 1195
Score = 43.5 bits (101), Expect = 4e-04
Identities = 74/296 (25%), Positives = 91/296 (30%), Gaps = 31/296 (10%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P G G A G GA +R G A P G+
Sbjct: 338 PGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGE 397
Query: 106 AGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP-RPSPG 164
GP + G G RG PG P A+ PG L PGK A P P
Sbjct: 398 MGPAGIPGAPGLMGARGPPG-----PAGANGAPG------LRGGAGEPGKNGAKGEPGPR 446
Query: 165 GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRG 224
G RG G+ PG+ E S G A R R P G
Sbjct: 447 GERGE-------AGI-PGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNG 498
Query: 225 SRRLRPDAGK--FPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGA 282
+ AG+ P +G +G + G G R +PG GG PG +
Sbjct: 499 IPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRG-MPGSPGG---PGSDGKPGPP 554
Query: 283 GLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAA-ARRRGPGGATEPG 337
G +S + G P +G P V+ P A R GPGG G
Sbjct: 555 GSQGESGRPGPPG----PSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQG 606
Score = 36.2 bits (82), Expect = 0.064
Identities = 43/151 (28%), Positives = 52/151 (34%), Gaps = 43/151 (28%)
Query: 55 SPTPGRARAAP----QQGDGGARRERAAAE------------------SLGTQSATLGPR 92
+P P +R AP +GD G ER AA G Q A P
Sbjct: 1075 APGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPG 1134
Query: 93 RGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGA----GDVNPVSASSPPGRPDPLLLTT 148
G R P+ GP GH G G PG G+ + PG+P P
Sbjct: 1135 PAGPRGPVGPS---GPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGP----- 1186
Query: 149 FVFPPGKTSAPRPSPGGRRGRPLGAARGTGL 179
PG AP P GG +GAA G+
Sbjct: 1187 ----PGPPGAPGPCCGG-----VGAAAIAGI 1208
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 63.9 bits (154), Expect = 3e-10
Identities = 99/370 (26%), Positives = 126/370 (34%), Gaps = 64/370 (17%)
Query: 57 TPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLG 116
+PG A Q G G ER + G A G P AGP +G
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG 350
Query: 117 HAGERGSPG-AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPG-GRRGRPLGAA 174
GE G G G P PG PPG A P+ G G+P A
Sbjct: 351 AKGEAGPQGPRGSEGPQGVRGEPG------------PPGPAGAAGPAGNPGADGQP--GA 396
Query: 175 RGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGK 234
+G PG+ A G+ R PS + G P G + ++G+
Sbjct: 397 KGANGAPGI------------------AGAPGFPGARGPSGPQGPGGPPGP---KGNSGE 435
Query: 235 FPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRS 294
P A G KG A E +GP PG AG G E GL P R
Sbjct: 436 -PGAPGSKGDTGAKGEPGPVGVQGP----PGPAGEEGKRGARGEPGPTGL--PGPPGERG 488
Query: 295 GSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLR--- 351
G +R G P + P P+ R + GP G+ PG + LP +
Sbjct: 489 GPGSR-----GFPGADGVAGPKGPAGERGSPGPAGPKGS--PGEAGRPGEAGLPGAKGLT 541
Query: 352 ----SPGPEGTSDAARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSA 407
SPGP+G + PG +D R PP P P R +G+ +G A
Sbjct: 542 GSPGSPGPDG-----KTGPPGPAGQDGRPGPPGP-PGARGQAGVMGFPGPKGAAGEPGKA 595
Query: 408 CEVAVPTTAG 417
E VP G
Sbjct: 596 GERGVPGPPG 605
Score = 58.2 bits (139), Expect = 2e-08
Identities = 117/424 (27%), Positives = 140/424 (33%), Gaps = 69/424 (16%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAF--GA- 106
G A +PG A + G GA+ + S G T P G R P GA
Sbjct: 515 GPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGAR 574
Query: 107 ---------GPLPLVSRLGHAGERGSPG-------AGDVNPVSASSPPGRPDPLLLTTFV 150
GP G AGERG PG AG A PPG P
Sbjct: 575 GQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQ 634
Query: 151 FP---PGKTSAPRPS-PGGRRGRP--------LGA-----ARGTGLNPGL-----SPRLQ 188
P PG P P+ P G G+P LGA ARG PG P
Sbjct: 635 GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPA 694
Query: 189 EPRGHQSARRTDTASRAGWATRRAPSRRRNFGAP--RGSRRLRPDAGKFPEASGGKGQRA 246
PRG A D A AP + GAP +G R AG G KG R
Sbjct: 695 GPRGANGAPGNDGAK----GDAGAPGAPGSQGAPGLQGMPGERGAAG----LPGPKGDRG 746
Query: 247 AGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGH 306
+ + G + + GL G + PPG + G S S +G+ P ++G
Sbjct: 747 DAGPKGADGSPG-KDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAP-GDRGE 804
Query: 307 PAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSP-GPEGTSDAARAP 365
P P P A PG EPG + P P GP G
Sbjct: 805 PG-----PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPG--PIGNVG 857
Query: 366 APGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAGRELLGSEP 425
APG + A PP +G V GP +A P AG+E G P
Sbjct: 858 APGAKGARGSAGPP-------GATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE-GGKGP 909
Query: 426 RNGT 429
R T
Sbjct: 910 RGET 913
Score = 55.1 bits (131), Expect = 1e-07
Identities = 98/337 (29%), Positives = 118/337 (35%), Gaps = 68/337 (20%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAF 104
+P GA PG AA G G R + G + A P + G+R T P
Sbjct: 717 APGSQGAPGLQGMPGERGAAGLPGPKGDRGDA------GPKGADGSPGKDGVRGLTGPIG 770
Query: 105 GAGPLPLVSRLGHAGERGSPG-AGDVNPVSASSPP---GRPDPLLLTTFVFPPGKTSAPR 160
GP G G++G G +G P A P G P P F PPG P
Sbjct: 771 PPGP------AGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQP- 823
Query: 161 PSPGGRRGRPLGA-ARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNF 219
G +G P A A+G PG A AG P N
Sbjct: 824 ----GAKGEPGDAGAKGDAGPPG------------------PAGPAG-----PPGPIGNV 856
Query: 220 GAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRER 279
GAP G++ R AG P A+G G AAG RV GP G AG PPG + +
Sbjct: 857 GAP-GAKGARGSAGP-PGATGFPG--AAG--RV--GPPGP----SGNAGPPGPPGPAGKE 904
Query: 280 AGAGLSRDSPQVPRSGSWA-----RPCREQGHPA----VLALQSPAPPSLARAAARRRGP 330
G G ++ R G P E+G P A +P P +A P
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLP 964
Query: 331 GGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAP 367
G E GF L S P GP G S P P
Sbjct: 965 GQRGERGFPGLPGPSGEP--GKQGPSGASGERGPPGP 999
Score = 51.2 bits (121), Expect = 2e-06
Identities = 87/328 (26%), Positives = 105/328 (32%), Gaps = 31/328 (9%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPL 109
GA + PG A A G G + G + + P G + T GP+
Sbjct: 395 GAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPV 454
Query: 110 PLVSRLGHAGERGSPGA-GDVNPVSASSPPG-RPDPLLLTTFVFPPGKTSAPRPSPGGRR 167
+ G AGE G GA G+ P PPG R P + FP A P G R
Sbjct: 455 GVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGP---GSRGFPGADGVAGPKGPAGER 511
Query: 168 GRPLGAARGTGLNPGLSPRLQE---PRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRG 224
G P G A G +PG + R E P + G P+ + P G
Sbjct: 512 GSP-GPAGPKG-SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPG 569
Query: 225 SRRLRPDAG--KFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGA 282
R AG FP G G+ ER +PG G V P G E
Sbjct: 570 PPGARGQAGVMGFPGPKGAAGEPGKAGER----------GVPGPPGAVGPAGKDGEAGAQ 619
Query: 283 GLSRDSPQVPRSGSWARPCREQGHPAVLALQSPA-PPSLARAAARRRGPGGATEPGFVTL 341
G + G G P L PA PP A + PG PG
Sbjct: 620 GPPGPAGPAGERGEQG----PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA 675
Query: 342 AFRSRLPLLRS----PGPEGTSDAARAP 365
P R PGP G A AP
Sbjct: 676 RGERGFPGERGVQGPPGPAGPRGANGAP 703
Score = 47.8 bits (112), Expect = 2e-05
Identities = 109/425 (25%), Positives = 131/425 (30%), Gaps = 75/425 (17%)
Query: 64 APQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGS 123
A ++G GAR E G GP G A GP G AG +GS
Sbjct: 463 AGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS 522
Query: 124 PG-------AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP-RPSPGGRRGR------ 169
PG AG + PG P P T P G+ P P P G RG+
Sbjct: 523 PGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF 582
Query: 170 --PLGAA--------RGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNF 219
P GAA RG PG + + A AG + P+ F
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 642
Query: 220 GAPRGSRRLRPDAGK-----------FPEASGGKGQRAAGAERVLNNGRGPR-------- 260
G +AGK P SG +G+R ER + GP
Sbjct: 643 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 702
Query: 261 ---------SRLPGLAGGVEPP---GWSRERAGAGLSRDSPQVPRSGSWARPCREQGHP- 307
+ PG G P G ER AGL P+ R A P G P
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL--PGPKGDRGD--AGPKGADGSPG 758
Query: 308 --AVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAP 365
V L P P A +G G + P T A R PGP G + A P
Sbjct: 759 KDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGA-RGAPGDRGEPGPPGPAGFAGPP 817
Query: 366 A----------PGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAV--P 413
PG A PP P P + V + GS+ A P
Sbjct: 818 GADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFP 877
Query: 414 TTAGR 418
AGR
Sbjct: 878 GAAGR 882
Score = 46.6 bits (109), Expect = 5e-05
Identities = 81/294 (27%), Positives = 97/294 (32%), Gaps = 49/294 (16%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAF 104
SP G A TPG A Q+G G +R G + P + G +
Sbjct: 936 SPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERG 995
Query: 105 GAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPG 164
GP+ G GE G GA A PGR P K P
Sbjct: 996 PPGPMGPPGLAGPPGESGREGA-----PGAEGSPGRDGS--------PGAKGDRGETGPA 1042
Query: 165 GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRG 224
G G P GA PG +P P G +S R +T AG A P R P+G
Sbjct: 1043 GPPGAP-GA-------PG-APGPVGPAG-KSGDRGETGP-AGPAGPVGPVGARGPAGPQG 1091
Query: 225 SRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGL 284
R G KG+ +R + RG GL G PPG E+ +G
Sbjct: 1092 PR-------------GDKGETGEQGDRGIKGHRG----FSGLQGPPGPPGSPGEQGPSGA 1134
Query: 285 SRDSPQVPRS--GSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEP 336
S P PR GS P G + L P P R GP G P
Sbjct: 1135 S--GPAGPRGPPGSAGAP----GKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGP 1182
Score = 36.6 bits (83), Expect = 0.049
Identities = 26/88 (29%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 66 QQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPG 125
+QGD G + R + G P G + PA GP G G G PG
Sbjct: 1101 EQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPG 1160
Query: 126 ----------AGDVNPVSASSPPGRPDP 143
GD PV PPG P P
Sbjct: 1161 PIGPPGPRGRTGDAGPVGPPGPPGPPGP 1188
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 58.5 bits (140), Expect = 1e-08
Identities = 109/403 (27%), Positives = 148/403 (36%), Gaps = 101/403 (25%)
Query: 29 RRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSAT 88
RR+ GS+ + LS H + + RSP+ R +P+ D G R+ + S G++S +
Sbjct: 250 RRSHRHSSGSSHSPSLSSHYSDS--RSPS----RLSPKHRDEG--RKTGSQRSSGSRSPS 301
Query: 89 LGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGER-----GSPGAGDVNPVSASSPPGRPDP 143
P+ G+G R G +G+R G PG+ P SSP R
Sbjct: 302 -------------PSGGSG-WGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRD 347
Query: 144 LLLTTFVFPP--GKTS-APR--PSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARR 198
PP GK S +PR PS GR GR AA G G R + RR
Sbjct: 348 KAAAAAPTPPARGKESPSPRSAPSSQGRGGR---AAGGAG------------RRRRRRRR 392
Query: 199 TDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRG 258
+ + A RR RR PRGS R A ++ G+G G E G G
Sbjct: 393 RRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHG 452
Query: 259 ----------PRSR------LPGLAG--------------GVEPPGWSRERA-GAGLSRD 287
PR+R PG G G P WS R+ SR
Sbjct: 453 GHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRS 512
Query: 288 SPQVP----RSGSWARPCREQGHPAVLALQSPAPPSLARAAA--------RRRGPGGATE 335
+ + P RS S +P A S A + AR + RRR E
Sbjct: 513 AEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRRDSPSFME 572
Query: 336 PGFVTLAFRSRLPLLRSPGPEGTSDA----------ARAPAPG 368
P +T A + +P R P P +S +R+P+PG
Sbjct: 573 PRRITSARKRPIPYYR-PSPSSSSSCLSSDYSTRSHSRSPSPG 614
Score = 32.7 bits (73), Expect = 0.71
Identities = 46/195 (23%), Positives = 61/195 (31%), Gaps = 4/195 (2%)
Query: 4 RAAAESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRARA 63
R SR + R RP R S A + S GA P PG R
Sbjct: 391 RRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERG 450
Query: 64 APQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGS 123
G R A + + S RRGG ++ + GP P + +
Sbjct: 451 HGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSS-SRSPGPHPRSWSSSRSPSKSR 509
Query: 124 PGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGL 183
+ + P S S P PL + S + RR R R +
Sbjct: 510 SRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRRD--- 566
Query: 184 SPRLQEPRGHQSARR 198
SP EPR SAR+
Sbjct: 567 SPSFMEPRRITSARK 581
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 57.8 bits (138), Expect = 2e-08
Identities = 86/332 (25%), Positives = 105/332 (31%), Gaps = 39/332 (11%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPL 109
G A PG A G GG + ER G A P G P GP+
Sbjct: 1270 GEAGNPGPPGEA------GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1323
Query: 110 PLVSRLGHAGERGSPGAGDV-NPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRG 168
G GE G G V PG+P P P A P P G+RG
Sbjct: 1324 GFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP--------PGPSGEAGPPGPPGKRG 1375
Query: 169 RPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRL 228
P GAA G G E +T G A + P R P G + L
Sbjct: 1376 PP-GAAGAEG-RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGL 1433
Query: 229 RPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRL--PGLAGGVEPPGWSRERAGAGL-- 284
AG+ G G L G + PGL G + PPG E+ GL
Sbjct: 1434 PGAAGQ----DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1489
Query: 285 SRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRG----------PGGAT 334
++ SP G P G P L P P + + G PG
Sbjct: 1490 TQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPG 1549
Query: 335 EPGFVTLAFRSRLPLLRSPGPEGTSDAARAPA 366
PG V LP+L S ++ +A A
Sbjct: 1550 PPGEVI----QPLPILSSKKTRRHTEGMQADA 1577
Score = 50.1 bits (118), Expect = 4e-06
Identities = 100/381 (26%), Positives = 130/381 (34%), Gaps = 70/381 (18%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPR-----------RG 94
P + G PG Q G+ GA +G GPR +G
Sbjct: 732 PGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYP----GPRGVKGADGVRGLKG 787
Query: 95 GLRSRTDPAFGA--GPLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFVF 151
+ + F G + L G G+ G G G P + P G P P +
Sbjct: 788 SKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGP---SGQAG 844
Query: 152 PPGKTSAPR-PSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATR 210
GK P P GR+G P G+ G PG + G + AR G A +
Sbjct: 845 EKGKLGVPGLPGYPGRQG-PKGSTGFPGF-PGAN-------GEKGAR--------GVAGK 887
Query: 211 RAPSRRRNFGAPRGSRRLRPDAGK-FPE-ASGGKGQRAAGAERVLNNGRGPRSRLPGLAG 268
P +R PRGSR R GK P+ SGG G ER +GP PG G
Sbjct: 888 PGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVG-FPGPKG 946
Query: 269 GVEP------PGWSRERAGAGLSRDS----------PQVPRSGSWARPCREQGHPAVLAL 312
P PG +R G + PQ P + P E+GHP
Sbjct: 947 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET--GPIGERGHPG---- 1000
Query: 313 QSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRS-PGPEGTSDAARAPAPGLRD 371
P PP G +PG ++ + LR PG G A APGL+
Sbjct: 1001 -PPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGA--QGAPGLKG 1057
Query: 372 RDLRAAPPRP--RPSQRPVSG 390
+ PP P P +R +G
Sbjct: 1058 GEGPQGPPGPVGSPGERGSAG 1078
Score = 49.7 bits (117), Expect = 6e-06
Identities = 89/334 (26%), Positives = 111/334 (33%), Gaps = 63/334 (18%)
Query: 68 GDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG-------AGPLPLVSRLGHAGE 120
GD G R ER G Q P G+R D G AGP L+ G G
Sbjct: 622 GDKGHRGER------GPQGPPGPPGDDGMRGE-DGEIGPRGLPGEAGPRGLLGPRGTPGA 674
Query: 121 RGSPGAGDVN----PVSASSPPGRPDPLLLTTFVFPPGKTSAP----RPSPGGRRGRPLG 172
G PG V+ P P G P PPG+ P P P G G P
Sbjct: 675 PGQPGMAGVDGPPGPKGNMGPQGEPG---------PPGQQGNPGPQGLPGPQGPIGPP-- 723
Query: 173 AARGTGLNPGLS--PRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPR------G 224
+G PGL+ P P GH + + G P + PR G
Sbjct: 724 GEKGPQGKPGLAGLPGADGPPGHPG--KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADG 781
Query: 225 SRRLRPDAGK-----FPEASGGKGQRAAGAE------RVLNNGRGPRSRLPGLAGGVEPP 273
R L+ G+ FP G G + E R + GP+ R G G P
Sbjct: 782 VRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGR-AGPTGDPGPS 840
Query: 274 GWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGA 333
G + E+ G+ P +P P G P AR A + GP G
Sbjct: 841 GQAGEKGKLGV----PGLPGYPGRQGPKGSTGFPGFPGANGEKG---ARGVAGKPGPRGQ 893
Query: 334 TEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAP 367
P + +R P PGP+GTS P P
Sbjct: 894 RGPTGPRGSRGARGP-TGKPGPKGTSGGDGPPGP 926
Score = 39.3 bits (90), Expect = 0.008
Identities = 89/373 (23%), Positives = 117/373 (31%), Gaps = 76/373 (20%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPR-RGGLRSRTDPA 103
SP G+A + G QG G E+ A G Q GP R G++
Sbjct: 1070 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQ----GPAGRDGVQGPVGLP 1125
Query: 104 FGAGPLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS 162
AGP G GE G PG G + PPG PPG
Sbjct: 1126 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG------------PPGLQ------ 1167
Query: 163 PGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQS--ARRTDTASRAGWATRRAPSRRRNFG 220
G G P G A G G PG PRG Q ++ D +R G+ P +
Sbjct: 1168 --GPVGAP-GIAGGDG-EPG-------PRGQQGMFGQKGDEGAR-GFPGPPGPIGLQGLP 1215
Query: 221 APRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRL-----------PGLAGG 269
P G + D G G G R + +GP + PG AG
Sbjct: 1216 GPPGEKGENGDVGPMGPP-GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1274
Query: 270 VEPPGWSRERAGAGLSRDSPQVPRSGSWARPCRE--------QGHPAVLALQSPAPPSLA 321
PPG + G + + G+ P + +G+P + P
Sbjct: 1275 PGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGE 1334
Query: 322 RAAARRRGPGGAT----EPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAA 377
A + G GG +PG PGP G S A P P + AA
Sbjct: 1335 PGPAGQDGVGGDKGEDGDPG--------------QPGPPGPSGEAGPPGPPGKRGPPGAA 1380
Query: 378 PPRPRPSQRPVSG 390
R ++ G
Sbjct: 1381 GAEGRQGEKGAKG 1393
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 57.8 bits (138), Expect = 2e-08
Identities = 86/332 (25%), Positives = 105/332 (31%), Gaps = 39/332 (11%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPL 109
G A PG A G GG + ER G A P G P GP+
Sbjct: 1219 GEAGNPGPPGEA------GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1272
Query: 110 PLVSRLGHAGERGSPGAGDV-NPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRG 168
G GE G G V PG+P P P A P P G+RG
Sbjct: 1273 GFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP--------PGPSGEAGPPGPPGKRG 1324
Query: 169 RPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRL 228
P GAA G G E +T G A + P R P G + L
Sbjct: 1325 PP-GAAGAEG-RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGL 1382
Query: 229 RPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRL--PGLAGGVEPPGWSRERAGAGL-- 284
AG+ G G L G + PGL G + PPG E+ GL
Sbjct: 1383 PGAAGQ----DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1438
Query: 285 SRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRG----------PGGAT 334
++ SP G P G P L P P + + G PG
Sbjct: 1439 TQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPG 1498
Query: 335 EPGFVTLAFRSRLPLLRSPGPEGTSDAARAPA 366
PG V LP+L S ++ +A A
Sbjct: 1499 PPGEVI----QPLPILSSKKTRRHTEGMQADA 1526
Score = 50.1 bits (118), Expect = 4e-06
Identities = 100/381 (26%), Positives = 130/381 (34%), Gaps = 70/381 (18%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPR-----------RG 94
P + G PG Q G+ GA +G GPR +G
Sbjct: 681 PGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYP----GPRGVKGADGVRGLKG 736
Query: 95 GLRSRTDPAFGA--GPLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFVF 151
+ + F G + L G G+ G G G P + P G P P +
Sbjct: 737 SKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGP---SGQAG 793
Query: 152 PPGKTSAPR-PSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATR 210
GK P P GR+G P G+ G PG + G + AR G A +
Sbjct: 794 EKGKLGVPGLPGYPGRQG-PKGSTGFPGF-PGAN-------GEKGAR--------GVAGK 836
Query: 211 RAPSRRRNFGAPRGSRRLRPDAGK-FPE-ASGGKGQRAAGAERVLNNGRGPRSRLPGLAG 268
P +R PRGSR R GK P+ SGG G ER +GP PG G
Sbjct: 837 PGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVG-FPGPKG 895
Query: 269 GVEP------PGWSRERAGAGLSRDS----------PQVPRSGSWARPCREQGHPAVLAL 312
P PG +R G + PQ P + P E+GHP
Sbjct: 896 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET--GPIGERGHPG---- 949
Query: 313 QSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRS-PGPEGTSDAARAPAPGLRD 371
P PP G +PG ++ + LR PG G A APGL+
Sbjct: 950 -PPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGA--QGAPGLKG 1006
Query: 372 RDLRAAPPRP--RPSQRPVSG 390
+ PP P P +R +G
Sbjct: 1007 GEGPQGPPGPVGSPGERGSAG 1027
Score = 49.7 bits (117), Expect = 6e-06
Identities = 89/334 (26%), Positives = 111/334 (33%), Gaps = 63/334 (18%)
Query: 68 GDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG-------AGPLPLVSRLGHAGE 120
GD G R ER G Q P G+R D G AGP L+ G G
Sbjct: 571 GDKGHRGER------GPQGPPGPPGDDGMRGE-DGEIGPRGLPGEAGPRGLLGPRGTPGA 623
Query: 121 RGSPGAGDVN----PVSASSPPGRPDPLLLTTFVFPPGKTSAP----RPSPGGRRGRPLG 172
G PG V+ P P G P PPG+ P P P G G P
Sbjct: 624 PGQPGMAGVDGPPGPKGNMGPQGEPG---------PPGQQGNPGPQGLPGPQGPIGPP-- 672
Query: 173 AARGTGLNPGLS--PRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPR------G 224
+G PGL+ P P GH + + G P + PR G
Sbjct: 673 GEKGPQGKPGLAGLPGADGPPGHPG--KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADG 730
Query: 225 SRRLRPDAGK-----FPEASGGKGQRAAGAE------RVLNNGRGPRSRLPGLAGGVEPP 273
R L+ G+ FP G G + E R + GP+ R G G P
Sbjct: 731 VRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGR-AGPTGDPGPS 789
Query: 274 GWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGA 333
G + E+ G+ P +P P G P AR A + GP G
Sbjct: 790 GQAGEKGKLGV----PGLPGYPGRQGPKGSTGFPGFPGANGEKG---ARGVAGKPGPRGQ 842
Query: 334 TEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAP 367
P + +R P PGP+GTS P P
Sbjct: 843 RGPTGPRGSRGARGP-TGKPGPKGTSGGDGPPGP 875
Score = 39.3 bits (90), Expect = 0.008
Identities = 89/373 (23%), Positives = 117/373 (31%), Gaps = 76/373 (20%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPR-RGGLRSRTDPA 103
SP G+A + G QG G E+ A G Q GP R G++
Sbjct: 1019 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQ----GPAGRDGVQGPVGLP 1074
Query: 104 FGAGPLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS 162
AGP G GE G PG G + PPG PPG
Sbjct: 1075 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG------------PPGLQ------ 1116
Query: 163 PGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQS--ARRTDTASRAGWATRRAPSRRRNFG 220
G G P G A G G PG PRG Q ++ D +R G+ P +
Sbjct: 1117 --GPVGAP-GIAGGDG-EPG-------PRGQQGMFGQKGDEGAR-GFPGPPGPIGLQGLP 1164
Query: 221 APRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRL-----------PGLAGG 269
P G + D G G G R + +GP + PG AG
Sbjct: 1165 GPPGEKGENGDVGPMGPP-GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1223
Query: 270 VEPPGWSRERAGAGLSRDSPQVPRSGSWARPCRE--------QGHPAVLALQSPAPPSLA 321
PPG + G + + G+ P + +G+P + P
Sbjct: 1224 PGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGE 1283
Query: 322 RAAARRRGPGGAT----EPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAA 377
A + G GG +PG PGP G S A P P + AA
Sbjct: 1284 PGPAGQDGVGGDKGEDGDPG--------------QPGPPGPSGEAGPPGPPGKRGPPGAA 1329
Query: 378 PPRPRPSQRPVSG 390
R ++ G
Sbjct: 1330 GAEGRQGEKGAKG 1342
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 57.8 bits (138), Expect = 2e-08
Identities = 86/332 (25%), Positives = 105/332 (31%), Gaps = 39/332 (11%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPL 109
G A PG A G GG + ER G A P G P GP+
Sbjct: 1258 GEAGNPGPPGEA------GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1311
Query: 110 PLVSRLGHAGERGSPGAGDV-NPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRG 168
G GE G G V PG+P P P A P P G+RG
Sbjct: 1312 GFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP--------PGPSGEAGPPGPPGKRG 1363
Query: 169 RPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRL 228
P GAA G G E +T G A + P R P G + L
Sbjct: 1364 PP-GAAGAEG-RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGL 1421
Query: 229 RPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRL--PGLAGGVEPPGWSRERAGAGL-- 284
AG+ G G L G + PGL G + PPG E+ GL
Sbjct: 1422 PGAAGQ----DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1477
Query: 285 SRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRG----------PGGAT 334
++ SP G P G P L P P + + G PG
Sbjct: 1478 TQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPG 1537
Query: 335 EPGFVTLAFRSRLPLLRSPGPEGTSDAARAPA 366
PG V LP+L S ++ +A A
Sbjct: 1538 PPGEVI----QPLPILSSKKTRRHTEGMQADA 1565
Score = 50.1 bits (118), Expect = 4e-06
Identities = 100/381 (26%), Positives = 130/381 (34%), Gaps = 70/381 (18%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPR-----------RG 94
P + G PG Q G+ GA +G GPR +G
Sbjct: 720 PGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYP----GPRGVKGADGVRGLKG 775
Query: 95 GLRSRTDPAFGA--GPLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFVF 151
+ + F G + L G G+ G G G P + P G P P +
Sbjct: 776 SKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGP---SGQAG 832
Query: 152 PPGKTSAPR-PSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATR 210
GK P P GR+G P G+ G PG + G + AR G A +
Sbjct: 833 EKGKLGVPGLPGYPGRQG-PKGSTGFPGF-PGAN-------GEKGAR--------GVAGK 875
Query: 211 RAPSRRRNFGAPRGSRRLRPDAGK-FPE-ASGGKGQRAAGAERVLNNGRGPRSRLPGLAG 268
P +R PRGSR R GK P+ SGG G ER +GP PG G
Sbjct: 876 PGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVG-FPGPKG 934
Query: 269 GVEP------PGWSRERAGAGLSRDS----------PQVPRSGSWARPCREQGHPAVLAL 312
P PG +R G + PQ P + P E+GHP
Sbjct: 935 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET--GPIGERGHPG---- 988
Query: 313 QSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRS-PGPEGTSDAARAPAPGLRD 371
P PP G +PG ++ + LR PG G A APGL+
Sbjct: 989 -PPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGA--QGAPGLKG 1045
Query: 372 RDLRAAPPRP--RPSQRPVSG 390
+ PP P P +R +G
Sbjct: 1046 GEGPQGPPGPVGSPGERGSAG 1066
Score = 49.7 bits (117), Expect = 6e-06
Identities = 89/334 (26%), Positives = 111/334 (33%), Gaps = 63/334 (18%)
Query: 68 GDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG-------AGPLPLVSRLGHAGE 120
GD G R ER G Q P G+R D G AGP L+ G G
Sbjct: 610 GDKGHRGER------GPQGPPGPPGDDGMRGE-DGEIGPRGLPGEAGPRGLLGPRGTPGA 662
Query: 121 RGSPGAGDVN----PVSASSPPGRPDPLLLTTFVFPPGKTSAP----RPSPGGRRGRPLG 172
G PG V+ P P G P PPG+ P P P G G P
Sbjct: 663 PGQPGMAGVDGPPGPKGNMGPQGEPG---------PPGQQGNPGPQGLPGPQGPIGPP-- 711
Query: 173 AARGTGLNPGLS--PRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPR------G 224
+G PGL+ P P GH + + G P + PR G
Sbjct: 712 GEKGPQGKPGLAGLPGADGPPGHPG--KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADG 769
Query: 225 SRRLRPDAGK-----FPEASGGKGQRAAGAE------RVLNNGRGPRSRLPGLAGGVEPP 273
R L+ G+ FP G G + E R + GP+ R G G P
Sbjct: 770 VRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGR-AGPTGDPGPS 828
Query: 274 GWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGA 333
G + E+ G+ P +P P G P AR A + GP G
Sbjct: 829 GQAGEKGKLGV----PGLPGYPGRQGPKGSTGFPGFPGANGEKG---ARGVAGKPGPRGQ 881
Query: 334 TEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAP 367
P + +R P PGP+GTS P P
Sbjct: 882 RGPTGPRGSRGARGP-TGKPGPKGTSGGDGPPGP 914
Score = 39.3 bits (90), Expect = 0.008
Identities = 89/373 (23%), Positives = 117/373 (31%), Gaps = 76/373 (20%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPR-RGGLRSRTDPA 103
SP G+A + G QG G E+ A G Q GP R G++
Sbjct: 1058 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQ----GPAGRDGVQGPVGLP 1113
Query: 104 FGAGPLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS 162
AGP G GE G PG G + PPG PPG
Sbjct: 1114 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG------------PPGLQ------ 1155
Query: 163 PGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQS--ARRTDTASRAGWATRRAPSRRRNFG 220
G G P G A G G PG PRG Q ++ D +R G+ P +
Sbjct: 1156 --GPVGAP-GIAGGDG-EPG-------PRGQQGMFGQKGDEGAR-GFPGPPGPIGLQGLP 1203
Query: 221 APRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRL-----------PGLAGG 269
P G + D G G G R + +GP + PG AG
Sbjct: 1204 GPPGEKGENGDVGPMGPP-GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1262
Query: 270 VEPPGWSRERAGAGLSRDSPQVPRSGSWARPCRE--------QGHPAVLALQSPAPPSLA 321
PPG + G + + G+ P + +G+P + P
Sbjct: 1263 PGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGE 1322
Query: 322 RAAARRRGPGGAT----EPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAA 377
A + G GG +PG PGP G S A P P + AA
Sbjct: 1323 PGPAGQDGVGGDKGEDGDPG--------------QPGPPGPSGEAGPPGPPGKRGPPGAA 1368
Query: 378 PPRPRPSQRPVSG 390
R ++ G
Sbjct: 1369 GAEGRQGEKGAKG 1381
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 57.4 bits (137), Expect = 3e-08
Identities = 101/384 (26%), Positives = 126/384 (32%), Gaps = 75/384 (19%)
Query: 105 GAGPLPLVSRLGHAGERGSPG-AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP---- 159
G GP+ L+ G G G+PG G P PG+ P PPGK
Sbjct: 89 GPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPG 148
Query: 160 RPSPGGRRG--RPLGAARGTGLNPGLSPRLQEPRGH-----------------QSARRTD 200
+P G RG P G ARG PGL P + RGH + +
Sbjct: 149 KPGRPGERGVVGPQG-ARGFPGTPGL-PGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGE 206
Query: 201 TASRAGWATRRAPSRRRNFGA--PRGSRRLRPDAGK--------------FPEASGGKGQ 244
+ R P R GA P G+R G FP A G KG+
Sbjct: 207 NGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGE 266
Query: 245 RAAGAERVLNNGRGPRSR--LPGLAGGVEPP------GWSRERAGAGLS--RDSPQVPRS 294
A GPR LPGL+G V PP G + + AGL +P +P
Sbjct: 267 IGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGP 326
Query: 295 GSWARPCREQGHPAVLALQSPAPPSLARAAARRRG-PGGATEPGFVTLAFRSRLPLLRSP 353
P G L P+ ++ + +G PG A G +
Sbjct: 327 RGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEE-----GKR 381
Query: 354 GPEGTSDAARAPAP----------GLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGP 403
GP G + +A P P GL D RA P P R SG V+ GP
Sbjct: 382 GPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGP-PGSRGASGPAGVR------GP 434
Query: 404 GSSACEVAVPTTAGRELLGSEPRN 427
A P G L P N
Sbjct: 435 NGDAGRPGEPGLMGPRGLPGSPGN 458
Score = 54.7 bits (130), Expect = 2e-07
Identities = 92/331 (27%), Positives = 106/331 (32%), Gaps = 64/331 (19%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG A G G R E AA G P G P AGP + G
Sbjct: 678 PGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGA 737
Query: 118 AGERGSPG-------AGDVNPVSASSPP---GRPDPLLLTTFVFPPGKTSAPRPSPGGRR 167
GERG+ G G PV A+ P G P P PPG T P GR
Sbjct: 738 KGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGF--PGAAGRT 795
Query: 168 GRP-LGAARGTGLNPGLSPR--LQEPRGHQS----ARRTDTASRAGWATRRAPSRRRNFG 220
G P G PG + + L+ PRG Q G+A + PS
Sbjct: 796 GPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTA 855
Query: 221 APRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERA 280
P P G +G A L RG R LPG+AG V PG
Sbjct: 856 GP-------------PGTPGPQGLLGAPGILGLPGSRGERG-LPGVAGAVGEPG------ 895
Query: 281 GAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVT 340
G+ A P +G P A+ SP A R PG PG
Sbjct: 896 PLGI-------------AGPPGARGPPG--AVGSPGVNGAPGEAGRDGNPGNDGPPG--- 937
Query: 341 LAFRSRLPLLRS----PGPEGTSDAARAPAP 367
R P + PG G AA AP P
Sbjct: 938 ---RDGQPGHKGERGYPGNIGPVGAAGAPGP 965
Score = 47.4 bits (111), Expect = 3e-05
Identities = 100/398 (25%), Positives = 131/398 (32%), Gaps = 56/398 (14%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG G+ G + A G + P G R GP + G
Sbjct: 195 PGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGP 254
Query: 118 AGERGSPG-AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARG 176
G G+PG G++ V + P G P V PG S P PG L A+G
Sbjct: 255 PGFPGAPGPKGEIGAVGNAGPAGPAGP---RGEVGLPG-LSGPVGPPGNPGANGLTGAKG 310
Query: 177 TGLNPGL--SPRLQEPRGHQSARRTDTASRA-GWATRRAPSRRRNFGAPRGSRRLRPDAG 233
PG+ +P L PRG A+ A G P+ + +G G
Sbjct: 311 AAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQG 370
Query: 234 KFPEASGGKGQRAAGAERVLNNGRGP--------RSRLPGL---AGGVEPPGWSRERAGA 282
P SG +G+R E GP LPG AG + PPG A
Sbjct: 371 P-PGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPA 429
Query: 283 GLSRDSPQVPRSGSWA--------------RPCREQGH---PAVLALQSPAPPSLARAAA 325
G+ + R G P ++G P + P P+ AR
Sbjct: 430 GVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEP 489
Query: 326 RR---RGPGGAT-EPGFVTLAFRSRLPLLR-SPGPEGTSDAARAPAP-GLRDRDLRAAPP 379
GP G T +PG + L R +PGP+G + A P P G++ PP
Sbjct: 490 GNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPP 549
Query: 380 RPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAG 417
P Q GL GP A EV P G
Sbjct: 550 GPPGFQ----GL---------PGPSGPAGEVGKPGERG 574
Score = 47.0 bits (110), Expect = 4e-05
Identities = 119/442 (26%), Positives = 144/442 (32%), Gaps = 75/442 (16%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P GAA + G G G + S G Q G R A
Sbjct: 330 PGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGS 389
Query: 106 AGPLPLVSRLGHAGERGSPGA-------------GDVNPVSASSP---PGRP-DPLLLTT 148
AGP G G RG PGA G P P GRP +P L+
Sbjct: 390 AGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGP 449
Query: 149 FVFP-------PGKTSAPRPSPG--GRRGRPLG--AARGTGLNPGLSPRLQEPRGHQSAR 197
P P P PG GR G P+G ARG N G P + P G
Sbjct: 450 RGLPGSPGNIGPAGKEGPVGLPGIDGRPG-PIGPAGARGEPGNIGF-PGPKGPTGDPG-- 505
Query: 198 RTDTASRAGWA-TRRAPSRRRNFGA--PRGSRRLRPDAGK-----------FPEASGGKG 243
+ AG A R AP N GA P G + ++ G+ P SG G
Sbjct: 506 KNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAG 565
Query: 244 QRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCRE 303
+ ER L+ G LPG AG G E AG + SG P
Sbjct: 566 EVGKPGERGLHGEFG----LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGP-PGPDGN 620
Query: 304 QGHPAVLALQSPAPPSLARAAARRRG----PGGATEPGFVTL----------AFRSRLPL 349
+G P V+ A PS RG PGG E G L R
Sbjct: 621 KGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGA 680
Query: 350 LRSPGPEG-TSDAARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSAC 408
+ +PGP G T D A A G A PR P +R G F +GP +A
Sbjct: 681 VGAPGPAGATGDRGEAGAAG----PAGPAGPRGSPGERGEVGPAGPNGF---AGPAGAAG 733
Query: 409 EVAVPTTAGRELLGSEPRNGTL 430
+ G + G + NG +
Sbjct: 734 QPGAKGERGAK--GPKGENGVV 753
Score = 36.2 bits (82), Expect = 0.064
Identities = 68/271 (25%), Positives = 82/271 (30%), Gaps = 37/271 (13%)
Query: 126 AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSP 185
AGD P PPG P PPG P P G +G GL PG
Sbjct: 35 AGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPG-PM 93
Query: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQR 245
L PRG A G+ P G+R GK E G G+
Sbjct: 94 GLMGPRGPPGA--AGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGE-DGHPGKP 150
Query: 246 AAGAERVLNNGRGPRS-----RLPGLAG--GVEPPGWSRERAGAGLSRDSPQVPRSGSWA 298
ER + +G R LPG G G + + GA + P P
Sbjct: 151 GRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTP 210
Query: 299 RPCREQGHPAVLALQSPAPPSLARAAARRRGP-------GGATEPGFVTLAFRSRLPLLR 351
+G P P+ AR + GP G A PGF
Sbjct: 211 GQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFP-----------G 259
Query: 352 SPGPEGTSDAARAPAPGLRDRDLRAAPPRPR 382
+PGP+G A P A P PR
Sbjct: 260 APGPKGEIGAVGNAGP--------AGPAGPR 282
Score = 34.7 bits (78), Expect = 0.19
Identities = 48/173 (27%), Positives = 62/173 (35%), Gaps = 23/173 (13%)
Query: 45 SPHVTGA---AQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSAT--------LGPR- 92
SP V GA A R PG + G G + ER ++G A +GP
Sbjct: 914 SPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAG 973
Query: 93 RGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPG----AGDVNPVSASSPPGRPDPLLLTT 148
+ G R T P+ GP V G +G +G G G+ P G L
Sbjct: 974 KHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPG 1033
Query: 149 FVFPPGKTSAP-RPSPGGRRG-----RPLGAARGTGLNPGLSPR-LQEPRGHQ 194
G AP P G RG P G TG + P ++ P+GHQ
Sbjct: 1034 IAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQ 1086
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 56.6 bits (135), Expect = 5e-08
Identities = 82/328 (25%), Positives = 103/328 (31%), Gaps = 48/328 (14%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPL 109
G A PG +G+ G + E + + G P G + P G
Sbjct: 1288 GEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDP 1347
Query: 110 PLVSRLGHAGERGSPG----AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS-PG 164
G AG+ G PG G+ + P G P P PPGK P P+ P
Sbjct: 1348 GPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGP------SGPPGKRGPPGPAGPE 1401
Query: 165 GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRG 224
GR+G GA G L+ P G +T G + P R P G
Sbjct: 1402 GRQGEK-GAKGEAG--------LEGPPG-----KTGPIGPQGAPGKPGPDGLRGIPGPVG 1447
Query: 225 SRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRL--PGLAGGVEPPGWSRERAGA 282
+ L P G G L GP+ PGL G + PPG E+
Sbjct: 1448 EQGLPGS----PGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDR 1503
Query: 283 GLSRDSPQVPRSGSW--ARPCREQGHPAVLALQSPAPPSLARAAARRRGP-GGATEPGFV 339
GL G P G P L P P A+ ++ GP G A PG
Sbjct: 1504 GLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPG-- 1561
Query: 340 TLAFRSRLPLLRSPGPEGTSDAARAPAP 367
PGP G P P
Sbjct: 1562 ------------PPGPPGPPGEVIQPLP 1577
Score = 48.9 bits (115), Expect = 1e-05
Identities = 71/276 (25%), Positives = 89/276 (32%), Gaps = 48/276 (17%)
Query: 45 SPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAF 104
SP G PG A Q G G + + G+ T P G + P
Sbjct: 1337 SPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPG 1396
Query: 105 GAGPLPLVSRLGHAGERGSPG-AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP-RPS 162
AGP G GE G G G P+ PG+P P L P G+ P P
Sbjct: 1397 PAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPG 1456
Query: 163 PGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAP 222
P G G P+G GL P+ + +GH G + R P
Sbjct: 1457 PDGPPG-PMGPPGLPGLKGDSGPKGE--KGHPG-----LIGLIGPPGEQGEKGDRGLPGP 1508
Query: 223 RGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGA 282
+GS SG KG++ GP PGL G PPG + +
Sbjct: 1509 QGS-------------SGPKGEQGITGPSGPIGPPGP----PGLPG---PPGPKGAKGSS 1548
Query: 283 GLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPP 318
G P P+ E GHP P PP
Sbjct: 1549 G-----PTGPKG--------EAGHPG-----PPGPP 1566
Score = 46.2 bits (108), Expect = 6e-05
Identities = 92/352 (26%), Positives = 104/352 (29%), Gaps = 63/352 (17%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPR-RGGLRSRTDPAF 104
P G TPG+ Q+G G R ER G GP+ G P
Sbjct: 891 PGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKP----GPKGNSGGDGPAGPPG 946
Query: 105 GAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRP--- 161
GP G G +G PG P PG P T F GKT P P
Sbjct: 947 ERGPNGPQGPTGFPGPKGPPG-----PPGKDGLPGHPGQRGETGF---QGKTGPPGPPGV 998
Query: 162 ----SPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRR 217
P G G P+G RG PG P G Q A + G P+
Sbjct: 999 VGPQGPTGETG-PMG-ERGHPGPPG-------PPGEQGL--PGLAGKEGTKGDPGPAGLP 1047
Query: 218 NFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSR 277
P G R D G P G G L GP PG G PG R
Sbjct: 1048 GKDGPPGLRGFPGDRG-LPGPVGALG---------LKGNEGP----PGPPGPAGSPG-ER 1092
Query: 278 ERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPG 337
AGA P P P E+G P Q PA + GP G P
Sbjct: 1093 GPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGP- 1151
Query: 338 FVTLAFRSRLPLLRSPGPEGTSDAARAPA-PGLRDRDLRAAPPRPRPSQRPV 388
PG +G P G + PP P Q P+
Sbjct: 1152 ---------------PGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPI 1188
Score = 44.7 bits (104), Expect = 2e-04
Identities = 92/359 (25%), Positives = 117/359 (32%), Gaps = 75/359 (20%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P G + PG R P GD G A G + P G PA
Sbjct: 1041 PGPAGLPGKDGPPG-LRGFP--GDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGA 1097
Query: 106 AGPLPLVSR------LGHAGERGSPG----AGDVNPVSASSPPGRPDPLLLTTFVFPPG- 154
AGP+ + R G AGE+G+PG G P G P P V PPG
Sbjct: 1098 AGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGP---AGPVGPPGE 1154
Query: 155 ------------------KTSAPRPSPGGRRGRPLGAARGTGLN--PGLSPRLQEPRGHQ 194
K P P G +G P+G +G + PG PRG Q
Sbjct: 1155 DGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQG-PIGQPGPSGADGEPG-------PRGQQ 1206
Query: 195 S--ARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKF--PEASGGKGQRAA-GA 249
++ D R G+ P + P G + D G+ P G +G A GA
Sbjct: 1207 GLFGQKGDEGPR-GFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGA 1265
Query: 250 ERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAV 309
+ GP+ G GG+ PG E+ G P +P G P E+G
Sbjct: 1266 D-------GPQ----GPPGGIGNPGAVGEKGEPG-EAGEPGLPGEGGPPGPKGERGEKGE 1313
Query: 310 LALQSPAPPSLARAAARRRGPGGATEP-GFVTLAFRSRLPLLRSPGPEGTSDAARAPAP 367
A P + GP G+ P GF PGP G A P
Sbjct: 1314 SGPSGAAGPPGPKGPPGDDGPKGSPGPVGFP-----------GDPGPPGEPGPAGQDGP 1361
Score = 33.5 bits (75), Expect = 0.42
Identities = 84/327 (25%), Positives = 104/327 (31%), Gaps = 75/327 (22%)
Query: 67 QGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGA 126
+G+ G + E A E GP G P GP ++G GERG PG
Sbjct: 449 RGEKGQKGEPAIIEPGMLIEGPPGPE--GPAGLPGPPGTMGP---TGQVGDPGERGPPGR 503
Query: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPR-------------------------P 161
+ A PG P +L+ F F G + +
Sbjct: 504 PGL--PGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPA 561
Query: 162 SPGGRRGR--PLGAARGTGL--NPG-LSPRLQEPRGHQSARRTDTASRAGWATRRAPSRR 216
P G GR P+G GL PG + P Q PRG Q AG P RR
Sbjct: 562 GPMGLTGRPGPVGPPGSGGLKGEPGDVGP--QGPRGVQG-----PPGPAG-----KPGRR 609
Query: 217 RNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWS 276
G+ G+R + P +G KG R L +G R PG +G PPG
Sbjct: 610 GRAGSD-GARGM-------PGQTGPKGDRGFDGLAGLPGEKGHRGD-PGPSGPPGPPGDD 660
Query: 277 RERAGAGL--SRDSPQVPRSGSWARPCREQGHPAVLALQ----SPAPPSLARAAARRRGP 330
ER G R P P P G P + P P P
Sbjct: 661 GERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPP 720
Query: 331 GGATEPGFVTLAFRSRLPLLRSPGPEG 357
G PG L PGP+G
Sbjct: 721 GQQGNPGAQGL-----------PGPQG 736
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 55.1 bits (131), Expect = 1e-07
Identities = 89/375 (23%), Positives = 122/375 (32%), Gaps = 47/375 (12%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPL 109
G + PG G G R +A + + + LG + G + P GP
Sbjct: 165 GVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQ 224
Query: 110 PLVSRLGHAGERGSPG----AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP----RP 161
L + G AG G PG G + P+ + P G P PG+ P P
Sbjct: 225 GLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPG---------KPGEDGEPGRNGNP 275
Query: 162 SPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSAR-RTDTASRAGWATRRAPSRRRNFG 220
G G P ARG PGL P L+ RGH+ G P+
Sbjct: 276 GEVGFAGSP--GARGFPGAPGL-PGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAM 332
Query: 221 APRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERA 280
P G R + + G+ G GQR A GP +PG +G PG E
Sbjct: 333 GPLGPRGMPGERGRL-GPQGAPGQRGAHGMPGKPGPMGPLG-IPGSSGFPGNPGMKGEAG 390
Query: 281 GAGL-SRDSPQVPRSGSW-ARPCREQGHPAVLALQ-SPAPPSLARAAARRRGPGGATEPG 337
G + PQ R + P G P + +P + PG A PG
Sbjct: 391 PTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPG 450
Query: 338 FVTLAFRSRLPLLRSPGPEGTS-------DAARAPAPGLRDRDLRAAPPRPRPSQRPVSG 390
SPGP+G++ PG + P P Q P+
Sbjct: 451 --------------SPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGP 496
Query: 391 LFKVKFFVPQSGPGS 405
+ P+ PG+
Sbjct: 497 PGEEGKRGPRGDPGT 511
Score = 43.5 bits (101), Expect = 4e-04
Identities = 90/330 (27%), Positives = 109/330 (33%), Gaps = 52/330 (15%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRS-RTDPAFGAGPLPLVSRLG 116
PG +G+ G + E G Q P G R R DP P P+ R G
Sbjct: 467 PGDPGVPGFKGEAGPKGEPGPH---GIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGER-G 522
Query: 117 HAGERGSPGA-GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPG--GRRGRP-LG 172
G RG PG+ G P A G P +S P+ S G GR G P L
Sbjct: 523 APGNRGFPGSDGLPGPKGAQGERG-------------PVGSSGPKGSQGDPGRPGEPGLP 569
Query: 173 AARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDA 232
ARG NPG +Q P G + G R P GS L
Sbjct: 570 GARGLTGNPG----VQGPEG-----KLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPK 620
Query: 233 GKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG-------LS 285
G GK A A G + G +G V PPG + ER G
Sbjct: 621 GS--SGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQG 678
Query: 286 RDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRS 345
P P G +P +QG P P P R PG EPG L
Sbjct: 679 LPGPPGP-PGEGGKP-GDQGVPGDPGAVGPLGP-----RGERGNPGERGEPGITGLPGEK 731
Query: 346 RLPLLRSP-GPEGTSDAARAPA----PGLR 370
+ P GP+G+ + P PGL+
Sbjct: 732 GMAGGHGPDGPKGSPGPSGTPGDTGPPGLQ 761
Score = 43.1 bits (100), Expect = 5e-04
Identities = 101/401 (25%), Positives = 122/401 (30%), Gaps = 97/401 (24%)
Query: 55 SPTP-GRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVS 113
SP P G A + G G + + G AT P G PA GP
Sbjct: 874 SPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGP---AG 930
Query: 114 RLGHAGERGSPGA-------GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS---- 162
LG G+ G PG G V + PPG P PG P P+
Sbjct: 931 PLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTG 990
Query: 163 -------PG--GRRGRP-----------LGAARGTGLN--------PGLSPRLQEPRGHQ 194
PG G RG P +G TG PG + + EP
Sbjct: 991 QRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEG 1050
Query: 195 SARRTDTASRAGWATRR----------------APSRRRNFGAPRGSRRLRPDAGK---- 234
A T R G R AP GAP G R D G
Sbjct: 1051 PAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAP-GDAGQRGDPGSRGPI 1109
Query: 235 ----------FPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGL 284
P G +G + +R +G R GL G PPG + E+ AG+
Sbjct: 1110 GPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRG-FTGLQGLPGPPGPNGEQGSAGI 1168
Query: 285 SRDSPQVPRSGSW-ARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGAT-EPGFVTLA 342
P PR P ++G+P L P P R + GP G EPG
Sbjct: 1169 --PGPFGPRGPPGPVGPSGKEGNPGPL---GPIGPPGVRGSVGEAGPEGPPGEPG----- 1218
Query: 343 FRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPRP 383
PGP G AA G D + P P P
Sbjct: 1219 ------PPGPPGPPGHLTAALGDIMGHYDESM----PDPLP 1249
Score = 42.4 bits (98), Expect = 9e-04
Identities = 80/306 (26%), Positives = 105/306 (34%), Gaps = 57/306 (18%)
Query: 68 GDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGA- 126
G G ER A + G + P G + P +GP G GE G PGA
Sbjct: 513 GPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGAR 572
Query: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPG--GRRGRP----LGAARGTGLN 180
G P G+ PL PG+ P P PG G RG+P L +G+ +
Sbjct: 573 GLTGNPGVQGPEGKLGPL------GAPGEDGRPGP-PGSIGIRGQPGSMGLPGPKGSSGD 625
Query: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
PG + A AG P +R GAP + P SG
Sbjct: 626 PG---------------KPGEAGNAG-----VPGQR---GAPGKDGEVGP--------SG 654
Query: 241 GKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRD----SPQVPRSGS 296
G ER GP + GL G PPG + G+ D P PR G
Sbjct: 655 PVGPPGLAGERGEQGPPGP-TGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPR-GE 712
Query: 297 WARPCREQGHPAVLALQSPAPPSLARAAARRRG-PGGATEPGFVTLAFRSRLP----LLR 351
P E+G P + L + +G PG + PG +P +
Sbjct: 713 RGNP-GERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAG 771
Query: 352 SPGPEG 357
+PGP+G
Sbjct: 772 TPGPKG 777
Score = 37.7 bits (86), Expect = 0.022
Identities = 93/385 (24%), Positives = 116/385 (30%), Gaps = 41/385 (10%)
Query: 68 GDGGARRERAAAESLGTQSATLGPRRGG------LRSRTDPAFGAGPLPLVSRLGHAGER 121
G GA+ ER S G + + P R G R T GP + LG GE
Sbjct: 537 GPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGED 596
Query: 122 GSPG-AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
G PG G + G P P + PG+ A G+RG P
Sbjct: 597 GRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGE--AGNAGVPGQRGAPGKDGEVGPSG 654
Query: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
P P L RG Q G+ P G G + + D G G
Sbjct: 655 PVGPPGLAGERGEQG-----PPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPL-G 708
Query: 241 GKGQRAAGAERVLNNGRGPRSRLP---GLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSW 297
+G+R ER G + LP G+AGG P G +G D+
Sbjct: 709 PRGERGNPGER----GEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDT--------- 755
Query: 298 ARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEG 357
P QG P + P R +G G R L PGP G
Sbjct: 756 -GPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGND----GARGLPGPLGPPGPAG 810
Query: 358 TSDAARAPAPGLRDRDLRAAP-PRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTA 416
+ P P R L P R P R +G F GP P
Sbjct: 811 PTGEKGEPGP----RGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEP 866
Query: 417 GRELLGSEPRNGTLESICSLHVGNG 441
G++ P L H NG
Sbjct: 867 GQKGDAGSPGPQGLAGSPGPHGPNG 891
Score = 36.6 bits (83), Expect = 0.049
Identities = 51/154 (33%), Positives = 60/154 (38%), Gaps = 25/154 (16%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSA--TLGP--RRGGLRSRTD 101
P G A TPGR A ++GD G + A G+Q A T GP G R D
Sbjct: 1046 PGPEGPAGNDGTPGRDGAVGERGDRG---DPGPAGLPGSQGAPGTPGPVGAPGDAGQRGD 1102
Query: 102 PAFGAGPLPLVSRLGHAGERGSPG-------AGDVNPVSASSPPGRPDPLLLTTFVFPPG 154
P GP + G AG+RG PG GD G L PPG
Sbjct: 1103 PG-SRGP---IGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPG 1158
Query: 155 ----KTSAPRPSPGGRRG--RPLGAARGTGLNPG 182
+ SA P P G RG P+G + G NPG
Sbjct: 1159 PNGEQGSAGIPGPFGPRGPPGPVGPSGKEG-NPG 1191
Score = 35.0 bits (79), Expect = 0.14
Identities = 87/328 (26%), Positives = 106/328 (32%), Gaps = 42/328 (12%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG A ++G+ G R +G + P G T AGP + G
Sbjct: 806 PGPAGPTGEKGEPGPRG------LVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGV 859
Query: 118 AGERGSPG----AGDVNPVSASSPPGRPDPLLLTTF------VFPPGKTSAPRPSPGGRR 167
GE G PG AG P + PG P + PPG T P GR
Sbjct: 860 KGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGF--PGSAGRV 917
Query: 168 GRPLGAARGTGLNPGLSPRLQEP-RGHQSARRTDTASRAGWATR---RAPSRRRNFGAPR 223
G P G PG + L EP + R D S R P + G P
Sbjct: 918 GPP-----GPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPG 972
Query: 224 GSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG 283
+ PD P +G GQR + RG R +PGL G PG G
Sbjct: 973 EDGQPGPDGP--PGPAGTTGQRGIVG---MPGQRGERG-MPGLPGPAGTPGKVGPTGATG 1026
Query: 284 LSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAF 343
V GS P E G + P A R G +PG L
Sbjct: 1027 DKGPPGPVGPPGS-NGPVGEPGPEGPAG--NDGTPGRDGAVGER---GDRGDPGPAGLPG 1080
Query: 344 RSRLPLLRSPGPEGT-SDAARAPAPGLR 370
P +PGP G DA + PG R
Sbjct: 1081 SQGAP--GTPGPVGAPGDAGQRGDPGSR 1106
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 55.1 bits (131), Expect = 1e-07
Identities = 96/358 (26%), Positives = 114/358 (31%), Gaps = 53/358 (14%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG A +G G + R +G P GL PA GP L G
Sbjct: 2155 PGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAG---PAGPQGPSGLK---GE 2208
Query: 118 AGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP-------RPSPGGRRGRP 170
GE G PG G P A PG P P + V P G P +P GR G
Sbjct: 2209 PGETGPPGRGLTGPTGAVGLPGPPGP---SGLVGPQGSPGLPGQVGETGKPGAPGRDGAS 2265
Query: 171 -LGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAP------- 222
RG+ PG SP L P G + G A P + GAP
Sbjct: 2266 GKDGDRGSPGVPG-SPGLPGPVGPKG--EPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDL 2322
Query: 223 ------RGSRRLRPDAGKFPEAS--------GGKGQRAAGAERVLNNGRGPRSRLPGLAG 268
+G R L G+ EA G GQ+ A + P +PG G
Sbjct: 2323 VGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKG--DPGVGVPGSPG 2380
Query: 269 GVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRR 328
PPG + GL +P V P E G P + A P
Sbjct: 2381 PPGPPGVKGDLGLPGLP-GAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPL 2439
Query: 329 G----PGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPR 382
G PG PG L P + PGP G PG+R D R PR
Sbjct: 2440 GPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRG-----ERGEPGIRGEDGRPGQEGPR 2492
Score = 52.0 bits (123), Expect = 1e-06
Identities = 96/364 (26%), Positives = 115/364 (31%), Gaps = 71/364 (19%)
Query: 50 GAAQRSPTPGRA-----------RAAP----QQGDGGARRERAAAESLGTQSATLGPRRG 94
GA R +PGRA + +P +GD G R R G +G
Sbjct: 1302 GADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGP 1361
Query: 95 GLRSRTDPAFGAGPLPLVSRLGHAGERGSPG------AGDVNPVSASSPPGRPDPLLLTT 148
GL R +GP LG G RG PG GD PPG + +
Sbjct: 1362 GLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPG 1421
Query: 149 FVFPPGKTSAPRPS-----PG--GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDT 201
PG +P P PG G +G A G PG SP Q PRG A
Sbjct: 1422 EPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPG-SPGEQGPRGPPGA----- 1475
Query: 202 ASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRS 261
P R F P G + + G P +G +G GP
Sbjct: 1476 ---------IGPKGDRGFPGPLGEAGEKGERGP-PGPAGSRGLPGVAGRPGAKGPEGP-- 1523
Query: 262 RLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLA 321
PG P G E+ G D V + A P E+G PA P A
Sbjct: 1524 --PG------PTGRQGEKGEPGRPGDPAVV--GPAVAGPKGEKGD------VGPAGPRGA 1567
Query: 322 RAAARRRGPGGATEPGFV----TLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAA 377
RGP G PG R + L GP G S PG + R
Sbjct: 1568 TGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSG-----PPGEKGDPGRPG 1622
Query: 378 PPRP 381
PP P
Sbjct: 1623 PPGP 1626
Score = 49.3 bits (116), Expect = 7e-06
Identities = 98/368 (26%), Positives = 119/368 (32%), Gaps = 78/368 (21%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG G G + E+ G A +GP G + AGP G
Sbjct: 1515 PGAKGPEGPPGPTGRQGEKGEPGRPG-DPAVVGPAVAGPKGEKGDVGPAGPR---GATGV 1570
Query: 118 AGERGSPG---AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP----------RPSPG 164
GERG PG GD P PG P+ LT PPG + P P P
Sbjct: 1571 QGERGPPGLVLPGDPGP---KGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPV 1627
Query: 165 GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRG 224
G RGR P P L G + R AP R P G
Sbjct: 1628 GPRGRDGEVGEKGDEGPPGDPGLPGKAGER-------------GLRGAPGVR----GPVG 1670
Query: 225 SRRLRPDAGK-----FPEASGGKGQRAAGAE-----RVLNNGRGPRSR-LPGLAGGVEP- 272
+ + D G+ P +SG KG R R+++ G G R + PG G P
Sbjct: 1671 EKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPR 1730
Query: 273 --------PGWSRERAGAGLSRDSPQVPRSGSWAR-PCREQGHPAVLALQSPAPPSLARA 323
PG ER G P P+ R P E+G L +
Sbjct: 1731 GPKGDPGLPGAPGERGIEGFR--GPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPG 1788
Query: 324 AARRRGPGGAT----EPGFVTLAFRSRLPLLRS----PGPEGTSDAARAPA----PGLRD 371
AA GP GA +PG R LP LR PGP G P PGL
Sbjct: 1789 AAGPSGPNGAAGKAGDPG------RDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNG 1842
Query: 372 RDLRAAPP 379
++ P
Sbjct: 1843 KNGEPGDP 1850
Score = 48.5 bits (114), Expect = 1e-05
Identities = 76/257 (29%), Positives = 93/257 (36%), Gaps = 51/257 (19%)
Query: 114 RLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFP--PGKTS--APRPSPGGRRGR 169
R G GERG+PG + PPG P P+ FP PG T R G + +
Sbjct: 1870 RDGPKGERGAPGI-----LGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQ 1924
Query: 170 PLGAARGTGLNPGLSP---RLQEPRGHQ-SARR--TDTASRAGWATRRAPSRRRNFGAPR 223
L RG PG P RL E G + SA R +T + + P RRR P+
Sbjct: 1925 GLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRG---PK 1981
Query: 224 GSRRLRPDAGK-----FPEASGGKGQRA----AGAERVLNNGRGPRSR------------ 262
G + GK FP G KG R G + RGP
Sbjct: 1982 GDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGI 2041
Query: 263 --LPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSL 320
LPG AGGV G ER G + + R G P G P P PP
Sbjct: 2042 PGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLP----GTPG-----PPGPPG- 2091
Query: 321 ARAAARRRGPGGATEPG 337
+ + GPG + E G
Sbjct: 2092 PKVSVDEPGPGLSGEQG 2108
Score = 46.6 bits (109), Expect = 5e-05
Identities = 102/374 (27%), Positives = 125/374 (33%), Gaps = 54/374 (14%)
Query: 56 PTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRL 115
P PG + G GA+ E + G + P G R P G L
Sbjct: 2099 PGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGER 2158
Query: 116 GHAGERGSPG----AGDVNPVSASSPPGRPDPLLLTTFVFP---------PGKTSAP--- 159
G AG G PG G PV PG P L P PG+T P
Sbjct: 2159 GMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRG 2218
Query: 160 RPSPGGRRGRPLGAARGTGL-----NPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPS 214
P G G P G +GL +PGL ++ E G A D AS R +P
Sbjct: 2219 LTGPTGAVGLP-GPPGPSGLVGPQGSPGLPGQVGE-TGKPGAPGRDGASGKD-GDRGSP- 2274
Query: 215 RRRNFGAPRGSRRLRPDAGK--FPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGG-VE 271
G P GS L G P +G GQ G L +G + GLAG V
Sbjct: 2275 -----GVP-GSPGLPGPVGPKGEPGPTGAPGQAVVG----LPGAKGEKGAPGGLAGDLVG 2324
Query: 272 PPGWSRERAGAGLSRDSPQVPRSGSWARPCRE-----------QGHPAVLALQSPAPPSL 320
PG +R G + + R+G P + +G P V SP PP
Sbjct: 2325 EPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGP 2384
Query: 321 ARAAARRRGPGGATEPGFVTLAFRS-RLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPP 379
PG PG V ++ + PGP G + A PG PP
Sbjct: 2385 PGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSG--ERGLAGPPGREGIPGPLGPP 2442
Query: 380 RPRPSQRP--VSGL 391
P S P SGL
Sbjct: 2443 GPPGSVGPPGASGL 2456
Score = 36.2 bits (82), Expect = 0.064
Identities = 88/356 (24%), Positives = 111/356 (31%), Gaps = 48/356 (13%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P V G PG G G R E G + P R G+ P
Sbjct: 2385 PGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGP 2444
Query: 106 AGPLPLVSRLGHAGERGSPGAGDVNPVSASSPP------GRPDPLLLTTFVFPPGKT--- 156
G + G G++G PG G P P GRP PPG
Sbjct: 2445 PGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGER 2504
Query: 157 -------SAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSAR--RTDTASRAGW 207
SA G LG G + R PRG + R D
Sbjct: 2505 GEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGER--GPRGLDGDKGPRGDNGDPGDK 2562
Query: 208 ATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLA 267
++ P + + G P G R L G+ P A+G G + + + RG + G
Sbjct: 2563 GSKGEPGDKGSAGLP-GLRGLLGPQGQ-PGAAGIPGDPGSPGKDGVPGIRGEK----GDV 2616
Query: 268 GGVEPPGWSRER---AGAGLSRDSPQVPRSGSWARP-----CREQGHPAVLALQSPAP-- 317
G + P G ER GL + +G RP E G P V QS AP
Sbjct: 2617 GFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPG-QSGAPGK 2675
Query: 318 -----PSLARAAARRRGP-GGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAP 367
P R + GP G E G R + PGP G +A P P
Sbjct: 2676 EGLIGPKGDRGFDGQPGPKGDQGEKG-----ERGTPGIGGFPGPSGNDGSAGPPGP 2726
Score = 35.0 bits (79), Expect = 0.14
Identities = 76/308 (24%), Positives = 96/308 (31%), Gaps = 65/308 (21%)
Query: 80 ESLGTQSATLGPRRG--GLRSRTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPVSASSP 137
ES G+ RRG G P GP+ G G+RG PG P
Sbjct: 1965 ESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPG--------PQGP 2016
Query: 138 PGRPDPLLLTTFVFPPGKTS-APRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSA 196
PG L PPG + A P G G P R G+ P + RG +
Sbjct: 2017 PG-----LALGERGPPGPSGLAGEPGKPGIPGLP---GRAGGVGEAGRPGERGERGEKGE 2068
Query: 197 RRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNG 256
R G R P P G P K G G L+
Sbjct: 2069 R--------GEQGRDGPPGLPGTPGPPG-----PPGPKVSVDEPGPG---------LSGE 2106
Query: 257 RGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPA 316
+GP PGL G PG + ++ G R P + P + G+P + + A
Sbjct: 2107 QGP----PGLKGAKGEPGSNGDQGPKG-DRGVPGIKGDRGEPGPRGQDGNPGLPGERGMA 2161
Query: 317 PPSLARAAARRRGP----GGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAP-GLRD 371
P RGP GG +PG PG G + A P GL+
Sbjct: 2162 GPEGKPGLQGPRGPPGPVGGHGDPG--------------PPGAPGLAGPAGPQGPSGLKG 2207
Query: 372 RDLRAAPP 379
PP
Sbjct: 2208 EPGETGPP 2215
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 55.1 bits (131), Expect = 1e-07
Identities = 94/343 (27%), Positives = 113/343 (32%), Gaps = 61/343 (17%)
Query: 46 PHVTGAA-QRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAF 104
P V G+ Q+ G A +G GA A +G + P GLR +
Sbjct: 643 PGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMG 702
Query: 105 GAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP----- 159
G L+ G G G PG P PG P + PPG T P
Sbjct: 703 PPGIPGLLGLQGPPGPPGVPG-----PPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGP 757
Query: 160 --RPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRR 217
P P G +G P RG PG P L+ G Q G A R P +
Sbjct: 758 NGPPGPPGTKGEP--GERGEDGLPG-KPGLRGEIGEQ-----------GLAGR--PGEKG 801
Query: 218 NFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSR 277
G P A FP G KG + E L +G R G AG PPG
Sbjct: 802 EAGL--------PGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGE-KGEAGPAGPPGLP- 851
Query: 278 ERAGAGLSRDSPQVP-------RSGSWARPCRE--QGHPAVLALQSPAPPSLARAAARRR 328
L P++P G P QG P L Q P P A+
Sbjct: 852 --GTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAH 909
Query: 329 G-PGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLR 370
G PG A PG + +PGP G + APGLR
Sbjct: 910 GAPGAAGNPG--------APGHVGAPGPSGPPGS--VGAPGLR 942
Score = 50.4 bits (119), Expect = 3e-06
Identities = 90/345 (26%), Positives = 111/345 (32%), Gaps = 78/345 (22%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGA--- 106
GA PG+ + G+ G R LGT++A G +R + A G
Sbjct: 973 GAPGLPGPPGKGK----DGEPGLRGSPGLPGPLGTKAAC-----GKVRGSENCALGGQCV 1023
Query: 107 -GPLPLVSRLGHAGERGSPGAGDVNPVSASSPP---GRPDPLLLTTFVFPPGKTSAPRPS 162
G G G RG PG G P S PP G P L F P G
Sbjct: 1024 KGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQG-------- 1075
Query: 163 PGGRRGRPLG-AARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGA 221
P GR G P RG PGLS L G + D +
Sbjct: 1076 PAGRDGAPGNPGERGPPGKPGLSSLLSP--GDINLLAKDVCN----------------DC 1117
Query: 222 PRGSRRLRPDAGKFPEASGGKGQRAAGAE--RVLNNGRGPRSRLPGLAGGVEPPGWSRER 279
P G L P G KG + + R G+ + PGL G PPG + +
Sbjct: 1118 PPGPPGL-------PGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPG---PPGIAGPQ 1167
Query: 280 AGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQ----SPAPPSLARAAARRRGPGGATE 335
G +V + G +QGHP V +P PP A PG
Sbjct: 1168 GSQGERGADGEVGQKG-------DQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGS 1220
Query: 336 PGFVTLAFRSRLPLLRSPGPEGTSDAARAPA-PGLRDRDLRAAPP 379
PG PGP+G S P G RD + PP
Sbjct: 1221 PG-----------KEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPP 1254
Score = 42.7 bits (99), Expect = 7e-04
Identities = 68/284 (23%), Positives = 97/284 (34%), Gaps = 53/284 (18%)
Query: 56 PTPGRARAAP----QQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPL 111
P P AR P GD GA R + ++G P + G T P GP
Sbjct: 1266 PGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPR-- 1323
Query: 112 VSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPL 171
G G+ GSPG+ PG P P +PG +
Sbjct: 1324 ----GPPGKNGSPGS-----------PGEP----------------GPSGTPGQK----- 1347
Query: 172 GAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSR--RRNFGAPRGSRRLR 229
++G +PGL P PRG + + P + F RG ++
Sbjct: 1348 -GSKGENGSPGL-PGFLGPRGPPG----EPGEKGVPGKEGVPGKPGEPGFKGERGDPGIK 1401
Query: 230 PDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSP 289
D G P G G + GP+ LPG G V PPG + GL +SP
Sbjct: 1402 GDKGP-PGGKGQPGDPGIPGHKGHTGLMGPQG-LPGENGPVGPPGPPGQPGFPGLRGESP 1459
Query: 290 QVPRSGSWAR-PCREQGHPAVLALQSPAPPSLARAAARRRGPGG 332
+ + +Q + L + PP+ +++ R GP G
Sbjct: 1460 SMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPG 1503
Score = 42.0 bits (97), Expect = 0.001
Identities = 86/336 (25%), Positives = 106/336 (31%), Gaps = 66/336 (19%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P + G PG G GA+ + A + G P G + P
Sbjct: 876 PGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGS 935
Query: 106 AGPLPLVSRLGHAGERGSPGA----GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRP 161
G L G GERG GA G PV PG P PPGK
Sbjct: 936 VGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPG------LPGPPGK------ 983
Query: 162 SPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGA 221
G+ G P G +PGL L R ++ + G + + GA
Sbjct: 984 ---GKDGEP-----GLRGSPGLPGPLGTKAACGKVRGSENCALGGQCV------KGDRGA 1029
Query: 222 PRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAG 281
P P + G +G G GP PG +G PPG
Sbjct: 1030 P-----------GIPGSPGSRGDPGIGV-------AGP----PGPSG---PPGDKGSPGS 1064
Query: 282 AGL-SRDSPQVP--RSGSWARPCREQGHPAVLALQSPAPPS----LARAAARRRGPGGAT 334
GL PQ P R G+ P E+G P L S P LA+ PG
Sbjct: 1065 RGLPGFPGPQGPAGRDGAPGNP-GERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPG 1123
Query: 335 EPGFVTLAFRSRLPLLRSPGPEGT-SDAARAPAPGL 369
PG F+ + PG EGT A PGL
Sbjct: 1124 LPGLP--GFKGDKGVPGKPGREGTEGKKGEAGPPGL 1157
Score = 33.5 bits (75), Expect = 0.42
Identities = 93/372 (25%), Positives = 119/372 (31%), Gaps = 52/372 (13%)
Query: 68 GDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGA- 126
G G++ R LG P G+R P GP V G GERG G
Sbjct: 542 GRDGSKGMRGEPGELGEPGL---PGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTR 598
Query: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRP-------SPGGRRGRPLGAARGTGL 179
G+ PG+P T PG + P P G G P + GL
Sbjct: 599 GEKGERGLDGFPGKPGD---TGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGL 655
Query: 180 N-----PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGK 234
PG PRGHQ A G R P P G + LR G
Sbjct: 656 KGEQGAPG-------PRGHQGA--------PGPPGARGPIGPEGRDGPPGLQGLRGKKGD 700
Query: 235 F--PEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG-LSRDSPQV 291
P G G + + GP PGL G + PG G +D P
Sbjct: 701 MGPPGIPGLLGLQGPPGPPGVPGPPGPGGS-PGLPGEIGFPGKPGPPGPTGPPGKDGPNG 759
Query: 292 PRS--GSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPL 349
P G+ P E+G + P P L + G E G L P
Sbjct: 760 PPGPPGTKGEP-GERGEDGL-----PGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPG 813
Query: 350 LR-SPGPEGTSDAARAPAPGLR-DRDLRA-APPRPRPSQRPVSGLFKVKFFVP-QSGPGS 405
+R G +G + PGL+ DR + A P P + LF +P + GP
Sbjct: 814 VRGEKGDQG--EKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKG 871
Query: 406 SACEVAVPTTAG 417
+ +P G
Sbjct: 872 EKGDPGLPGEPG 883
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 53.5 bits (127), Expect = 4e-07
Identities = 94/367 (25%), Positives = 124/367 (33%), Gaps = 52/367 (14%)
Query: 39 AEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRS 98
A A +P +P P + P A R AA ++G + L R GG+
Sbjct: 10 AGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKP--LAERAGGIGG 67
Query: 99 RTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPD--PLLLTTFVFP---P 153
T P AG S G NP S GR + P T P P
Sbjct: 68 ATIPESAP----------RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSP 117
Query: 154 GKTSAP-RPSPGGRRGRPLGA----ARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWA 208
G+ S RP P G++G + A ARG L ARR + G
Sbjct: 118 GRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSA-----GARRDTSGPTPGTP 172
Query: 209 TRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAG 268
+ R R G G R P A P G + ++ +E R P G
Sbjct: 173 SPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGG 232
Query: 269 GVEPPGWSRERAGAGLSRDSPQVPRSGSWARPC-REQGHPA---VLALQSPAPPSLA--- 321
G++ P SR + + SP RSG AR R HP+ LQ+ PP +
Sbjct: 233 GLQRPA-SRSLSSSATPLSSP--ARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR 289
Query: 322 RAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRP 381
+ AA GP ++ L +P P GT A P P L A P
Sbjct: 290 KDAAPALGPLSSSP--------------LATPSPSGTK-ARPVPPPDNAATPLPATLPPS 334
Query: 382 RPSQRPV 388
P P+
Sbjct: 335 PPLATPL 341
Score = 36.6 bits (83), Expect = 0.049
Identities = 97/394 (24%), Positives = 136/394 (34%), Gaps = 52/394 (13%)
Query: 25 GDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGARR---------- 74
G +R A SL SA L SP +G + R TP RA A P Q +
Sbjct: 232 GGLQRPASRSLSSSATPLS-SPARSGPSARG-TP-RAPAHPSQPKPKGLQALRPPQVTPP 288
Query: 75 ERAAAESLGTQSAT--LGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPV 132
+ AA +LG S++ P G ++R P PL + L + +P + P
Sbjct: 289 RKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLP--LAPP 346
Query: 133 SASSPPGR---PDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQE 189
S S+PP P P PP T+ P +P + P + SP LQ
Sbjct: 347 SPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVP----HSLTSPSLQA 402
Query: 190 PRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRL----RPDAGKFPEASGGKGQR 245
P + + G T +A + L RP A P++ +
Sbjct: 403 PPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRP-ASTPPDSPPLQAPL 461
Query: 246 AAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQG 305
+ A L S P ++ P +A + L+ SPQ P S P Q
Sbjct: 462 SLPASPPLQT-----SLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQS 516
Query: 306 HPAVLALQSP---------------APPSLARAAARRRGPGGATEPGFVTLAFRSRLPLL 350
A +LQ+P APP L A+A P T P ++ L
Sbjct: 517 SLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPL 576
Query: 351 RSPGPEGTSDAARAP---APGLRDRDLRAAPPRP 381
+P PE S A P P L L+ P P
Sbjct: 577 TTPPPETPSSIATPPPQAPPALASPPLQGLPSPP 610
Score = 30.0 bits (66), Expect = 4.6
Identities = 73/280 (26%), Positives = 91/280 (32%), Gaps = 78/280 (27%)
Query: 98 SRTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTS 157
S+ P+ A PL + SP A SA+ PP P PL PP +
Sbjct: 693 SQAPPSLAAPPLQVPP---------SPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPA 743
Query: 158 APRPSPGGR---RGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPS 214
+P SP R PL AA P LQ P PS
Sbjct: 744 SPPMSPSATPPPRVPPLLAA----------PPLQVP----------------------PS 771
Query: 215 RRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPG 274
P S + P A P+A A A L P + PG A P
Sbjct: 772 -------PPASLPMSPLAKPPPQAP------PALATPPLQALPSPPASFPGQA----PFS 814
Query: 275 WSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGAT 334
S + L+ PQ P + A L P+PP+ A RR P
Sbjct: 815 PSASLPMSPLATPPPQAPPVLA-----------APLLQVPPSPPASPTLQAPRRPP---- 859
Query: 335 EPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDL 374
PG T RL L +PGP +R+P+ L DL
Sbjct: 860 TPGPDTSVSGPRLTLALAPGP--PPPPSRSPSSTLSGPDL 897
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 53.1 bits (126), Expect = 5e-07
Identities = 93/360 (25%), Positives = 121/360 (33%), Gaps = 50/360 (13%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTD---PAFGAGPLPLVSR 114
PG + + QG+ G + R G P G + T P GP+
Sbjct: 1129 PGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD 1188
Query: 115 LGHAGE---RGSPGA-GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRP 170
G GE RG GA GD PG P P T PPG P G+RG P
Sbjct: 1189 PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGP---TGENGPPG--------PLGKRG-P 1236
Query: 171 LGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRP 230
G+ G G + +P + +T AG A + P R G + RP
Sbjct: 1237 AGSPGSEGRQGGKGAK-GDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQG-RP 1294
Query: 231 DAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQ 290
A G G R +G + PGL G + PPG E+ GL
Sbjct: 1295 GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGH-PGLIGLIGPPGEQGEKGDRGLPGPQGS 1353
Query: 291 VPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLL 350
+ G E G P P P A +G GAT PG
Sbjct: 1354 PGQKG-------EMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPG------------- 1393
Query: 351 RSPGPEGTSDAARAPA-PGLRDRDLRAAP-PRPRPSQRPVSG--LFKVKFFVPQSG-PGS 405
GP+G P PG ++ P P+ ++R V G L + +P G PGS
Sbjct: 1394 ---GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGS 1450
Score = 47.8 bits (112), Expect = 2e-05
Identities = 93/354 (26%), Positives = 118/354 (33%), Gaps = 94/354 (26%)
Query: 58 PGRARAAPQQ-GDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLG 116
PG + P + G GG + A A L R LR GP+ R G
Sbjct: 360 PGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPP------GPMGYTGRPG 413
Query: 117 HAGERGSPG----AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRP-L 171
G+ GSPG +GD+ P P G PPGK GRRGR
Sbjct: 414 PLGQPGSPGLKGESGDLGPQGPRGPQG---------LTGPPGK--------AGRRGRAGA 456
Query: 172 GAARGTGLNPGLS--------PRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPR 223
ARG +PG+ P L +GH R DT + + P
Sbjct: 457 DGARGMPGDPGVKGDRGFDGLPGLPGEKGH----RGDTGA-------------QGLPGPP 499
Query: 224 GSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG 283
G R D G+ G +G R L +GP PG+ G PPG
Sbjct: 500 GEDGERGDDGEI----GPRGLPGESGPRGLLGPKGP----PGIPG---PPGVR------- 541
Query: 284 LSRDSPQVPRSGSWAR----PCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFV 339
D PQ P+ + P +QG P L P A +GP G +PG
Sbjct: 542 -GMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQG---AIGPHGEKGPQG--KPGLP 595
Query: 340 TLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRP--RPSQRPVSGL 391
+ P PG EG PG + + P P P R V G+
Sbjct: 596 GMPGSDGPP--GHPGKEG--------PPGTKGNQGPSGPQGPLGYPGPRGVKGV 639
Score = 46.6 bits (109), Expect = 5e-05
Identities = 78/316 (24%), Positives = 104/316 (32%), Gaps = 69/316 (21%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG A A + G G + A GT+ GP GP+ L G
Sbjct: 1033 PGAAGADGEPGARGPQGHFGAKGDEGTRGFN-GP--------------PGPIGLQGLPGP 1077
Query: 118 AGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGT 177
+GE+G GDV P+ PPG P P P+ PGG +G
Sbjct: 1078 SGEKGE--TGDVGPMGPPGPPGPRGPA-------GPNGADGPQGPPGGVGNLGPPGEKGE 1128
Query: 178 GLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPE 237
G SP +Q G + PRG R + ++G+ P
Sbjct: 1129 PGESG-SPGIQGEPGVK--------------------------GPRGERGEKGESGQ-PG 1160
Query: 238 ASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPP--GWSRERAGAGLSRDSPQVPRSG 295
G G + + GP G G PP G R + GA R P
Sbjct: 1161 EPGPPGPKGPTGDDGPKGNPGP----VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQP 1216
Query: 296 SWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGP 355
P E G P L + PA + R+ G G +PG + ++ GP
Sbjct: 1217 GSPGPTGENGPPGPLGKRGPA--GSPGSEGRQGGKGAKGDPGAIGAPGKT--------GP 1266
Query: 356 EGTSDAARAPAP-GLR 370
G + A P P GLR
Sbjct: 1267 VGPAGPAGKPGPDGLR 1282
Score = 45.1 bits (105), Expect = 1e-04
Identities = 89/343 (25%), Positives = 114/343 (33%), Gaps = 84/343 (24%)
Query: 67 QGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGA 126
+GD G + +R G++ GP G + RT P GP L +G G+ G PG
Sbjct: 661 KGDIGVKGDRGEVGVPGSRGED-GPE--GPKGRTGPTGDPGPPGL---MGEKGKLGVPGL 714
Query: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPR 186
PG P GR+G P G+ G PG S
Sbjct: 715 -----------PGYP-----------------------GRQG-PKGSLGFPGF-PGAS-- 736
Query: 187 LQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGK--FPEASGGKGQ 244
G + AR G + + P R PRG R R GK SGG G
Sbjct: 737 -----GEKGAR--------GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGP 783
Query: 245 RAAGAERVLNNGRGPRSRLPGLAGGVEP------PGWSRERAGAGL-SRDSPQVP----- 292
ER L +GP PG G P PG +R G + P P
Sbjct: 784 HGPPGERGLPGPQGPNG-FPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG 842
Query: 293 --RSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLL 350
+ P E+GHP P PP G +PG + L
Sbjct: 843 PQGAAGETGPMGERGHPG-----PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGL 897
Query: 351 RS-PGPEGTSDAARAPAPGLRDRDLRAAPPRP--RPSQRPVSG 390
R PG G A PGL+ + + PP P P +R +G
Sbjct: 898 RGFPGERGL--PGTAGGPGLKGNEGPSGPPGPAGSPGERGAAG 938
Score = 43.5 bits (101), Expect = 4e-04
Identities = 60/254 (23%), Positives = 86/254 (33%), Gaps = 42/254 (16%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P G + PG G G+ + + G A P + G PA
Sbjct: 1216 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK 1275
Query: 106 AGPLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRP-------------DPLLLTTFVF 151
GP L G G++G PGA G P PPG P P L+ +
Sbjct: 1276 PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLI-GLIG 1334
Query: 152 PPGKTS--------APRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTAS 203
PPG+ P+ SPG + + A G + PG P L P G + A+
Sbjct: 1335 PPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGP-IGPGGPPGLPGPAGPKGAK------ 1387
Query: 204 RAGWATRRAPSRRRNFGAPRG-----SRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRG 258
G P + P G ++P + P+ K +R+ R++
Sbjct: 1388 --GATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPK----KTRRSVDGSRLMQEDEA 1441
Query: 259 -PRSRLPGLAGGVE 271
P PG GG+E
Sbjct: 1442 IPTGGAPGSPGGLE 1455
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 53.1 bits (126), Expect = 5e-07
Identities = 93/360 (25%), Positives = 121/360 (33%), Gaps = 50/360 (13%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTD---PAFGAGPLPLVSR 114
PG + + QG+ G + R G P G + T P GP+
Sbjct: 1108 PGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD 1167
Query: 115 LGHAGE---RGSPGA-GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRP 170
G GE RG GA GD PG P P T PPG P G+RG P
Sbjct: 1168 PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGP---TGENGPPG--------PLGKRG-P 1215
Query: 171 LGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRP 230
G+ G G + +P + +T AG A + P R G + RP
Sbjct: 1216 AGSPGSEGRQGGKGAK-GDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQG-RP 1273
Query: 231 DAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQ 290
A G G R +G + PGL G + PPG E+ GL
Sbjct: 1274 GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGH-PGLIGLIGPPGEQGEKGDRGLPGPQGS 1332
Query: 291 VPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLL 350
+ G E G P P P A +G GAT PG
Sbjct: 1333 PGQKG-------EMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPG------------- 1372
Query: 351 RSPGPEGTSDAARAPA-PGLRDRDLRAAP-PRPRPSQRPVSG--LFKVKFFVPQSG-PGS 405
GP+G P PG ++ P P+ ++R V G L + +P G PGS
Sbjct: 1373 ---GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGS 1429
Score = 47.8 bits (112), Expect = 2e-05
Identities = 93/354 (26%), Positives = 118/354 (33%), Gaps = 94/354 (26%)
Query: 58 PGRARAAPQQ-GDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLG 116
PG + P + G GG + A A L R LR GP+ R G
Sbjct: 339 PGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPP------GPMGYTGRPG 392
Query: 117 HAGERGSPG----AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRP-L 171
G+ GSPG +GD+ P P G PPGK GRRGR
Sbjct: 393 PLGQPGSPGLKGESGDLGPQGPRGPQG---------LTGPPGK--------AGRRGRAGA 435
Query: 172 GAARGTGLNPGLS--------PRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPR 223
ARG +PG+ P L +GH R DT + + P
Sbjct: 436 DGARGMPGDPGVKGDRGFDGLPGLPGEKGH----RGDTGA-------------QGLPGPP 478
Query: 224 GSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG 283
G R D G+ G +G R L +GP PG+ G PPG
Sbjct: 479 GEDGERGDDGEI----GPRGLPGESGPRGLLGPKGP----PGIPG---PPGVR------- 520
Query: 284 LSRDSPQVPRSGSWAR----PCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFV 339
D PQ P+ + P +QG P L P A +GP G +PG
Sbjct: 521 -GMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQG---AIGPHGEKGPQG--KPGLP 574
Query: 340 TLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRP--RPSQRPVSGL 391
+ P PG EG PG + + P P P R V G+
Sbjct: 575 GMPGSDGPP--GHPGKEG--------PPGTKGNQGPSGPQGPLGYPGPRGVKGV 618
Score = 46.6 bits (109), Expect = 5e-05
Identities = 78/316 (24%), Positives = 104/316 (32%), Gaps = 69/316 (21%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG A A + G G + A GT+ GP GP+ L G
Sbjct: 1012 PGAAGADGEPGARGPQGHFGAKGDEGTRGFN-GP--------------PGPIGLQGLPGP 1056
Query: 118 AGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGT 177
+GE+G GDV P+ PPG P P P+ PGG +G
Sbjct: 1057 SGEKGE--TGDVGPMGPPGPPGPRGPA-------GPNGADGPQGPPGGVGNLGPPGEKGE 1107
Query: 178 GLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPE 237
G SP +Q G + PRG R + ++G+ P
Sbjct: 1108 PGESG-SPGIQGEPGVK--------------------------GPRGERGEKGESGQ-PG 1139
Query: 238 ASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPP--GWSRERAGAGLSRDSPQVPRSG 295
G G + + GP G G PP G R + GA R P
Sbjct: 1140 EPGPPGPKGPTGDDGPKGNPGP----VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQP 1195
Query: 296 SWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGP 355
P E G P L + PA + R+ G G +PG + ++ GP
Sbjct: 1196 GSPGPTGENGPPGPLGKRGPA--GSPGSEGRQGGKGAKGDPGAIGAPGKT--------GP 1245
Query: 356 EGTSDAARAPAP-GLR 370
G + A P P GLR
Sbjct: 1246 VGPAGPAGKPGPDGLR 1261
Score = 45.1 bits (105), Expect = 1e-04
Identities = 89/343 (25%), Positives = 114/343 (33%), Gaps = 84/343 (24%)
Query: 67 QGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGA 126
+GD G + +R G++ GP G + RT P GP L +G G+ G PG
Sbjct: 640 KGDIGVKGDRGEVGVPGSRGED-GPE--GPKGRTGPTGDPGPPGL---MGEKGKLGVPGL 693
Query: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPR 186
PG P GR+G P G+ G PG S
Sbjct: 694 -----------PGYP-----------------------GRQG-PKGSLGFPGF-PGAS-- 715
Query: 187 LQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGK--FPEASGGKGQ 244
G + AR G + + P R PRG R R GK SGG G
Sbjct: 716 -----GEKGAR--------GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGP 762
Query: 245 RAAGAERVLNNGRGPRSRLPGLAGGVEP------PGWSRERAGAGL-SRDSPQVP----- 292
ER L +GP PG G P PG +R G + P P
Sbjct: 763 HGPPGERGLPGPQGPNG-FPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG 821
Query: 293 --RSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLL 350
+ P E+GHP P PP G +PG + L
Sbjct: 822 PQGAAGETGPMGERGHPG-----PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGL 876
Query: 351 RS-PGPEGTSDAARAPAPGLRDRDLRAAPPRP--RPSQRPVSG 390
R PG G A PGL+ + + PP P P +R +G
Sbjct: 877 RGFPGERGL--PGTAGGPGLKGNEGPSGPPGPAGSPGERGAAG 917
Score = 43.5 bits (101), Expect = 4e-04
Identities = 60/254 (23%), Positives = 86/254 (33%), Gaps = 42/254 (16%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P G + PG G G+ + + G A P + G PA
Sbjct: 1195 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK 1254
Query: 106 AGPLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRP-------------DPLLLTTFVF 151
GP L G G++G PGA G P PPG P P L+ +
Sbjct: 1255 PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLI-GLIG 1313
Query: 152 PPGKTS--------APRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTAS 203
PPG+ P+ SPG + + A G + PG P L P G + A+
Sbjct: 1314 PPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGP-IGPGGPPGLPGPAGPKGAK------ 1366
Query: 204 RAGWATRRAPSRRRNFGAPRG-----SRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRG 258
G P + P G ++P + P+ K +R+ R++
Sbjct: 1367 --GATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPK----KTRRSVDGSRLMQEDEA 1420
Query: 259 -PRSRLPGLAGGVE 271
P PG GG+E
Sbjct: 1421 IPTGGAPGSPGGLE 1434
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 53.1 bits (126), Expect = 5e-07
Identities = 93/360 (25%), Positives = 121/360 (33%), Gaps = 50/360 (13%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTD---PAFGAGPLPLVSR 114
PG + + QG+ G + R G P G + T P GP+
Sbjct: 1215 PGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD 1274
Query: 115 LGHAGE---RGSPGA-GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRP 170
G GE RG GA GD PG P P T PPG P G+RG P
Sbjct: 1275 PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGP---TGENGPPG--------PLGKRG-P 1322
Query: 171 LGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRP 230
G+ G G + +P + +T AG A + P R G + RP
Sbjct: 1323 AGSPGSEGRQGGKGAK-GDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQG-RP 1380
Query: 231 DAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQ 290
A G G R +G + PGL G + PPG E+ GL
Sbjct: 1381 GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGH-PGLIGLIGPPGEQGEKGDRGLPGPQGS 1439
Query: 291 VPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLL 350
+ G E G P P P A +G GAT PG
Sbjct: 1440 PGQKG-------EMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPG------------- 1479
Query: 351 RSPGPEGTSDAARAPA-PGLRDRDLRAAP-PRPRPSQRPVSG--LFKVKFFVPQSG-PGS 405
GP+G P PG ++ P P+ ++R V G L + +P G PGS
Sbjct: 1480 ---GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGS 1536
Score = 47.8 bits (112), Expect = 2e-05
Identities = 93/354 (26%), Positives = 118/354 (33%), Gaps = 94/354 (26%)
Query: 58 PGRARAAPQQ-GDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLG 116
PG + P + G GG + A A L R LR GP+ R G
Sbjct: 446 PGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPP------GPMGYTGRPG 499
Query: 117 HAGERGSPG----AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRP-L 171
G+ GSPG +GD+ P P G PPGK GRRGR
Sbjct: 500 PLGQPGSPGLKGESGDLGPQGPRGPQG---------LTGPPGK--------AGRRGRAGA 542
Query: 172 GAARGTGLNPGLS--------PRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPR 223
ARG +PG+ P L +GH R DT + + P
Sbjct: 543 DGARGMPGDPGVKGDRGFDGLPGLPGEKGH----RGDTGA-------------QGLPGPP 585
Query: 224 GSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAG 283
G R D G+ G +G R L +GP PG+ G PPG
Sbjct: 586 GEDGERGDDGEI----GPRGLPGESGPRGLLGPKGP----PGIPG---PPGVR------- 627
Query: 284 LSRDSPQVPRSGSWAR----PCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFV 339
D PQ P+ + P +QG P L P A +GP G +PG
Sbjct: 628 -GMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQG---AIGPHGEKGPQG--KPGLP 681
Query: 340 TLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRP--RPSQRPVSGL 391
+ P PG EG PG + + P P P R V G+
Sbjct: 682 GMPGSDGPP--GHPGKEG--------PPGTKGNQGPSGPQGPLGYPGPRGVKGV 725
Score = 46.6 bits (109), Expect = 5e-05
Identities = 78/316 (24%), Positives = 104/316 (32%), Gaps = 69/316 (21%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG A A + G G + A GT+ GP GP+ L G
Sbjct: 1119 PGAAGADGEPGARGPQGHFGAKGDEGTRGFN-GP--------------PGPIGLQGLPGP 1163
Query: 118 AGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGT 177
+GE+G GDV P+ PPG P P P+ PGG +G
Sbjct: 1164 SGEKGE--TGDVGPMGPPGPPGPRGPA-------GPNGADGPQGPPGGVGNLGPPGEKGE 1214
Query: 178 GLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPE 237
G SP +Q G + PRG R + ++G+ P
Sbjct: 1215 PGESG-SPGIQGEPGVK--------------------------GPRGERGEKGESGQ-PG 1246
Query: 238 ASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPP--GWSRERAGAGLSRDSPQVPRSG 295
G G + + GP G G PP G R + GA R P
Sbjct: 1247 EPGPPGPKGPTGDDGPKGNPGP----VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQP 1302
Query: 296 SWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGP 355
P E G P L + PA + R+ G G +PG + ++ GP
Sbjct: 1303 GSPGPTGENGPPGPLGKRGPA--GSPGSEGRQGGKGAKGDPGAIGAPGKT--------GP 1352
Query: 356 EGTSDAARAPAP-GLR 370
G + A P P GLR
Sbjct: 1353 VGPAGPAGKPGPDGLR 1368
Score = 45.1 bits (105), Expect = 1e-04
Identities = 89/343 (25%), Positives = 114/343 (33%), Gaps = 84/343 (24%)
Query: 67 QGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGA 126
+GD G + +R G++ GP G + RT P GP L +G G+ G PG
Sbjct: 747 KGDIGVKGDRGEVGVPGSRGED-GPE--GPKGRTGPTGDPGPPGL---MGEKGKLGVPGL 800
Query: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPR 186
PG P GR+G P G+ G PG S
Sbjct: 801 -----------PGYP-----------------------GRQG-PKGSLGFPGF-PGAS-- 822
Query: 187 LQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGK--FPEASGGKGQ 244
G + AR G + + P R PRG R R GK SGG G
Sbjct: 823 -----GEKGAR--------GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGP 869
Query: 245 RAAGAERVLNNGRGPRSRLPGLAGGVEP------PGWSRERAGAGL-SRDSPQVP----- 292
ER L +GP PG G P PG +R G + P P
Sbjct: 870 HGPPGERGLPGPQGPNG-FPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG 928
Query: 293 --RSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLL 350
+ P E+GHP P PP G +PG + L
Sbjct: 929 PQGAAGETGPMGERGHPG-----PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGL 983
Query: 351 RS-PGPEGTSDAARAPAPGLRDRDLRAAPPRP--RPSQRPVSG 390
R PG G A PGL+ + + PP P P +R +G
Sbjct: 984 RGFPGERGL--PGTAGGPGLKGNEGPSGPPGPAGSPGERGAAG 1024
Score = 43.5 bits (101), Expect = 4e-04
Identities = 60/254 (23%), Positives = 86/254 (33%), Gaps = 42/254 (16%)
Query: 46 PHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFG 105
P G + PG G G+ + + G A P + G PA
Sbjct: 1302 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK 1361
Query: 106 AGPLPLVSRLGHAGERGSPGA-GDVNPVSASSPPGRP-------------DPLLLTTFVF 151
GP L G G++G PGA G P PPG P P L+ +
Sbjct: 1362 PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLI-GLIG 1420
Query: 152 PPGKTS--------APRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTAS 203
PPG+ P+ SPG + + A G + PG P L P G + A+
Sbjct: 1421 PPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGP-IGPGGPPGLPGPAGPKGAK------ 1473
Query: 204 RAGWATRRAPSRRRNFGAPRG-----SRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRG 258
G P + P G ++P + P+ K +R+ R++
Sbjct: 1474 --GATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPK----KTRRSVDGSRLMQEDEA 1527
Query: 259 -PRSRLPGLAGGVE 271
P PG GG+E
Sbjct: 1528 IPTGGAPGSPGGLE 1541
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 52.0 bits (123), Expect = 1e-06
Identities = 105/384 (27%), Positives = 132/384 (34%), Gaps = 94/384 (24%)
Query: 108 PLPLVSRLGHAGERGSPGAGDVNPVSASSPPG---------RPDPLLLTTF------VFP 152
P P + G AG RGS GD + PG R D L ++T P
Sbjct: 32 PSPSAAAAGAAGARGSE-TGDPGSPRGAEEPGKKRHERLFHRQDALWISTSSAGTGGAEP 90
Query: 153 PGKTSAP-------RPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRA 205
P + AP P+P GRR G L+ GLSP +P G ++ R S
Sbjct: 91 PALSPAPASPARPVSPAP-GRRLSLWAVPPGPPLSGGLSPD-PKPGGAPTSSRRPLLSSP 148
Query: 206 GWATRRAPSRRRNFGAP--------RGSRRLR----PDAGK--------FPEASGGKG-- 243
W P R G P GSRRL+ P A K +A GGKG
Sbjct: 149 SWGGPE-PEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAG 207
Query: 244 -----------QRAAGAERVLNNGRG-PRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQV 291
R G++ G + AGG + GAG
Sbjct: 208 SRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGVGAGAGARGKLS 267
Query: 292 PRSG-------SWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFR 344
PR G S P G P L L P+ A AA + PG A
Sbjct: 268 PRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSPATAVTAASAQPPGPAP---------- 317
Query: 345 SRLPLLRSPGPEGTSDAARAPAPGL-RDRDLRAAPPRPRPSQRPVSGLF-KVKFFVPQSG 402
P+ P PAPGL R R+ A R R + +SG+F K P SG
Sbjct: 318 ---PITLEP-----------PAPGLKRGREGGRASTRDRKMLKFISGIFTKSTGGPPGSG 363
Query: 403 PGSSACEVAVPTTAGRELLGSEPR 426
P ++ + RELLG+E R
Sbjct: 364 PLPGPPSLS-SGSGSRELLGAELR 386
>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 52.0 bits (123), Expect = 1e-06
Identities = 53/187 (28%), Positives = 74/187 (39%), Gaps = 32/187 (17%)
Query: 163 PGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTAS-RAGWATRR----APSRRR 217
P GRR P + RG + P + L RG R A+ +AG RR P R
Sbjct: 51 PAGRR--PCASHRGRRITPATALLLLSHRGRAERRSMQAAAAKAGSPGRRRVGKGPPSRE 108
Query: 218 NFGAPRGSRRLRPDAGKF--------PEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGG 269
++ R DAG+ P++ GG+ A+GA+R G+ PR + P AG
Sbjct: 109 SWTRSAPQRCPSQDAGRAGSRVCRSRPQSRGGQKAAASGAKRRGVGGKEPRRQKPAAAGA 168
Query: 270 VEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRG 329
++ G S P+ R G A P + G P A A A+ RG
Sbjct: 169 ---------KSRGGKSHKKPR--RRGQKAAPAKNSGG------GGNKPQKAAAAGAKNRG 211
Query: 330 PGGATEP 336
GG +P
Sbjct: 212 GGGGKKP 218
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 52.0 bits (123), Expect = 1e-06
Identities = 96/346 (27%), Positives = 115/346 (33%), Gaps = 52/346 (15%)
Query: 90 GPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPG----------------AGDVNPVS 133
G + GL + PA GP P SR+G AG G PG GD
Sbjct: 101 GMGKPGLHGQPGPA---GP-PGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRG 156
Query: 134 ASSPPGRPDPLLLTTFVFPPGKTSAPR-PSPGGRRGRPLGAARGTGLNPGLSPRLQEPRG 192
PPG P P +T PGK A P P G +G P G PG P + +G
Sbjct: 157 PPGPPGLPGPSGITI----PGKPGAQGVPGPPGFQGEP-----GPQGEPG-PPGDRGLKG 206
Query: 193 HQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERV 252
+ G P G P + +P P A G KG+ +G V
Sbjct: 207 DNGVGQPGLPGAPGQGGAPGPP-----GLPGPAGLGKPGLDGLPGAPGDKGE--SGPPGV 259
Query: 253 LNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLAL 312
GPR PG G PPG PQ P SG+ P +G P ++
Sbjct: 260 ----PGPRGE-PGAVGPKGPPGVDGVGVPGAAGLPGPQGP-SGAKGEP-GTRGPPGLIGP 312
Query: 313 QSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPA-PGLRD 371
P L RGP G PG L R PG +G P PG
Sbjct: 313 TGYGMPGLP-GPKGDRGPAGV--PGL--LGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAG 367
Query: 372 RDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPTTAG 417
R PP P+ P G V GP A + VP G
Sbjct: 368 LPGRRGPPGPKGEAGP-GGPPGVPGIRGDQGPSGLAGKPGVPGERG 412
Score = 48.1 bits (113), Expect = 2e-05
Identities = 79/294 (26%), Positives = 94/294 (31%), Gaps = 56/294 (19%)
Query: 58 PGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGH 117
PG A QG GA+ E G +GP G+ P GP + LG
Sbjct: 283 PGAAGLPGPQGPSGAKGEPGTRGPPGL----IGPTGYGMPGLPGPKGDRGPAGVPGLLGD 338
Query: 118 AGERGSPG-AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRP----SPGGRRGRP-- 170
GE G G G+ P PPG P L PG+ P P PGG G P
Sbjct: 339 RGEPGEDGEPGEQGPQGLGGPPGLPGSAGL------PGRRGPPGPKGEAGPGGPPGVPGI 392
Query: 171 LGAARGTGL--NPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRL 228
G +GL PG+ P H T G+ G P G
Sbjct: 393 RGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFT-----------GRPGG---- 437
Query: 229 RPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGL---AGGVEPPGWSRERAGAGLS 285
P +G GQ+ RGP S +PGL AG + P G + GL
Sbjct: 438 -------PGVAGALGQKGDLGLPGQPGLRGP-SGIPGLQGPAGPIGPQGLPGLKGEPGL- 488
Query: 286 RDSPQVPRSGSWARP--CREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPG 337
P P G P G P V P P + PG PG
Sbjct: 489 ---PGPPGEGRAGEPGTAGPTGPPGV-----PGSPGITGPPGPPGPPGPPGAPG 534
Score = 44.3 bits (103), Expect = 2e-04
Identities = 88/336 (26%), Positives = 107/336 (31%), Gaps = 42/336 (12%)
Query: 64 APQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGS 123
AP QG LG P G + + P GP G G +G
Sbjct: 218 APGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPR---GEPGAVGPKGP 274
Query: 124 PG---------AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAA 174
PG AG P S G P + P G P P G RG P G
Sbjct: 275 PGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRG-PAGVP 333
Query: 175 -----RGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNF---GAPRGSR 226
RG G P Q P+G AG RR P + G P G
Sbjct: 334 GLLGDRGEPGEDG-EPGEQGPQG--LGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVP 390
Query: 227 RLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSR 286
+R D G SG G+ ER L GP PG G PG++ G G++
Sbjct: 391 GIRGDQG----PSGLAGKPGVPGERGLPGAHGP----PGPTGPKGEPGFTGRPGGPGVAG 442
Query: 287 DSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSR 346
Q G +P +G + LQ PA P + PG EPG R
Sbjct: 443 ALGQKGDLGLPGQP-GLRGPSGIPGLQGPAGPIGPQGL-----PGLKGEPGLPGPPGEGR 496
Query: 347 LPLLRSPGPEGTSDAARAP-APGLRDRDLRAAPPRP 381
PG G + P +PG+ PP P
Sbjct: 497 ---AGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGP 529
Score = 38.5 bits (88), Expect = 0.013
Identities = 44/134 (32%), Positives = 49/134 (36%), Gaps = 26/134 (19%)
Query: 50 GAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPL 109
G R PG A A Q+GD G L Q GP G+ PA GP
Sbjct: 430 GFTGRPGGPGVAGALGQKGDLG----------LPGQPGLRGP--SGIPGLQGPAGPIGPQ 477
Query: 110 PLVSRLGHAGERGSPG---AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAP-RPSPGG 165
L G G G PG AG+ + PPG P PG T P P P G
Sbjct: 478 GLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPG---------SPGITGPPGPPGPPG 528
Query: 166 RRGRPLGAARGTGL 179
G P GA TG+
Sbjct: 529 PPGAP-GAFDETGI 541
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 52.0 bits (123), Expect = 1e-06
Identities = 100/415 (24%), Positives = 142/415 (34%), Gaps = 65/415 (15%)
Query: 7 AESRDHRARLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAP- 65
+ SR A +T + A G A S G +A P T + QR +P A P
Sbjct: 275 SRSRSRSAAAKTHTTALAGRSPSPA-SGRRGEGDAPFSEPGTT-STQRPSSPETATKQPS 332
Query: 66 ---QQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLV---------- 112
+ D + + A S + ++ GP G P PL
Sbjct: 333 SPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVN 392
Query: 113 --SRLGHAGERGSPGAGDVNPVSASSP--PGRPDPLLLTTFVFPPGKTSAPRPSPGGRR- 167
S +R P + + P S+SS P P P ++ ++ P P+PG R
Sbjct: 393 PPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHRE 452
Query: 168 --------GRPLG-AARGTGLNPGLSPRLQEPRGHQSAR----RTDTASRAGWATRRAPS 214
R G A R + S R+ R +A+ R+ T ++ G + R+P
Sbjct: 453 ISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQ 512
Query: 215 RRRNFGAPR------GSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAG 268
RR+ A R RR R + + P S + + G R GR SR P G
Sbjct: 513 WRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRS-HSRSPATRG 571
Query: 269 GVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRR 328
SR A G SR R P R + A + S +R ARRR
Sbjct: 572 RSR----SRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRG---RSRSRTPARRR 624
Query: 329 GPGGATEPGFVTLAFRSRLPL---LRSPGPEGTSDAARAPAPGLRDRDLRAAPPR 380
R+R P+ RS P S +R+ P R R P R
Sbjct: 625 S--------------RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 665
Score = 42.0 bits (97), Expect = 0.001
Identities = 79/365 (21%), Positives = 115/365 (31%), Gaps = 39/365 (10%)
Query: 45 SPHVTGAAQRSPTPGRA--RAAPQQGDGGARRERAAAESLGTQSATLGP---------RR 93
+P + SP P RA P++ G+ + G+ S P RR
Sbjct: 1611 APRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARR 1670
Query: 94 GG-------LRSRTDPAFGAG-PLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLL 145
G +SRT P + P ++R R + S + P R P +
Sbjct: 1671 GSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSV 1730
Query: 146 LTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPR-LQEPRGHQSARRTDTA-- 202
+ ++S R S R + G +P PR LQ R +T T
Sbjct: 1731 SSPEPAEKSRSSRRRRSASSPRTKTTSRR---GRSPSPKPRGLQRSRSRSRREKTRTTRR 1787
Query: 203 -SRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRS 261
R+G + + R+R+ R +RR R +G + + + R R P +
Sbjct: 1788 RDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPT 1847
Query: 262 RLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLA 321
P W R R SR SP R P + S +
Sbjct: 1848 SRKRSRSRTSPAPWKRSR-----SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRS 1902
Query: 322 RAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRP 381
R + RR P R R RS P T +R+ P R R PP
Sbjct: 1903 RTSVTRRRSRSRASP-----VSRRR---SRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVT 1954
Query: 382 RPSQR 386
R R
Sbjct: 1955 RRRSR 1959
Score = 35.4 bits (80), Expect = 0.11
Identities = 55/247 (22%), Positives = 80/247 (32%), Gaps = 56/247 (22%)
Query: 155 KTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPS 214
++ + P+P RR A R T + S R +A +T T + AG R+PS
Sbjct: 247 RSRSTTPAPKSRR-----AHRSTSADSASSSDTSRSRSRSAAAKTHTTALAG----RSPS 297
Query: 215 RRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPG 274
P RR DA F E QR + E P
Sbjct: 298 -------PASGRRGEGDA-PFSEPGTTSTQRPSSPETATKQPSSPYEDK----------- 338
Query: 275 WSRERAGAGLSRDSPQVPRSGSWARPC--------REQGHPAVLAL----QSPAPPSLAR 322
+++ +R SP RS + P R G P LA Q P P
Sbjct: 339 -DKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEA 397
Query: 323 AAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPR 382
+ R R P + E + P + + +P P R ++P P+
Sbjct: 398 SPTRDRSPPKSPE---------------KLPQSSSSESSPPSPQPTKVSRHASSSPESPK 442
Query: 383 PSQRPVS 389
P+ P S
Sbjct: 443 PAPAPGS 449
Score = 35.0 bits (79), Expect = 0.14
Identities = 114/488 (23%), Positives = 167/488 (34%), Gaps = 105/488 (21%)
Query: 4 RAAAESRDH------RARLRTLSEARPG------DWERRAGSSLCGSAEALLLSPHVTGA 51
R+A R H R R R+ + AR G RR+ S + +P G
Sbjct: 555 RSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGR 614
Query: 52 AQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPL 111
+ RS TP R R+ + R R+ A G + RRG RSRT G
Sbjct: 615 S-RSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGR----- 668
Query: 112 VSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPL 171
S S P R ++ R RRGR
Sbjct: 669 ---------------------SRSRTPAR--------------RSGRSRSRTPARRGR-- 691
Query: 172 GAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPD 231
+ +PR R RR + SR R+ S R S+R R
Sbjct: 692 --------SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQR-RSR 742
Query: 232 AGKFPEASGGKGQRAAGAERVLNNGRG-PRSRLP---GLAGGVEPPGWS------RERAG 281
+ PE K + ++ R L++ R +SRL L+G P R R+G
Sbjct: 743 SNSSPEMK--KSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSG 800
Query: 282 A----GLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAP-PSLARAAARRRGPGGATEP 336
+ SR P+ RS S P ++ P+ + S +P P + R+G + +
Sbjct: 801 SSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQA 860
Query: 337 GFVTLAFRSRLPLLRSPGPE--GTSDAARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKV 394
++ + R SP PE + + + + R + PPR PS R S KV
Sbjct: 861 NEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPS-RSSSPQPKV 919
Query: 395 KFFV---PQSGPGSSACEVAVPTTAGRELLGSEPRNGTLESICSLHVGNGARAHVLELHP 451
K + +S GSS+ + R + PR S CS +
Sbjct: 920 KAIISPRQRSHSGSSS------PSPSRVTSRTTPRRSRSVSPCS------------NVES 961
Query: 452 RSLSQYSH 459
R L +YSH
Sbjct: 962 RLLPRYSH 969
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 51.6 bits (122), Expect = 1e-06
Identities = 92/362 (25%), Positives = 123/362 (33%), Gaps = 45/362 (12%)
Query: 39 AEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRS 98
A A +P +P P + P A R AA ++G + L R GG+
Sbjct: 10 AGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKP--LAERAGGIGG 67
Query: 99 RTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPD--PLLLTTFVFP---P 153
T P AG S G NP S GR + P T P P
Sbjct: 68 ATIPESAP----------RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSP 117
Query: 154 GKTSAP-RPSPGGRRGRPLGA----ARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWA 208
G+ S RP P G++G + A ARG L ARR + G
Sbjct: 118 GRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSA-----GARRDTSGPTPGTP 172
Query: 209 TRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAG 268
+ R R G G R P A P G + ++ +E R P G
Sbjct: 173 SPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGG 232
Query: 269 GVEPPGWSRERAGAGLSRDSPQVPRSGSWARPC-REQGHPA---VLALQSPAPPSLA--- 321
G++ P SR + + SP RSG AR R HP+ LQ+ PP +
Sbjct: 233 GLQRPA-SRSLSSSATPLSSP--ARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR 289
Query: 322 RAAARRRGP--GGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPP 379
+ AA GP + A +S+ P P +S + P L APP
Sbjct: 290 KDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATP------LPLAPP 343
Query: 380 RP 381
P
Sbjct: 344 SP 345
Score = 35.0 bits (79), Expect = 0.14
Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 277 RERAGAGLSRDSPQV-------PRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRG 329
R++A AG + +P PR RP A+ L + A R G
Sbjct: 5 RDKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGG 64
Query: 330 PGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPRPSQRPVS 389
GGAT P A +R S G + A+R PA G +R APP S PVS
Sbjct: 65 IGGATIPESAPRAGPTR-----SAGTSSRNPASRPPASGRGER----APPAKNTSPGPVS 115
Query: 390 GLFKVKFFVPQSGPGSSACEVAVPTTAGRELLGSEPRNGTLES 432
+ G ++ T R P+ L +
Sbjct: 116 SPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSA 158
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 51.6 bits (122), Expect = 1e-06
Identities = 100/373 (26%), Positives = 128/373 (34%), Gaps = 74/373 (19%)
Query: 27 WERRAGSSLC--GSAEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGT 84
WE+R+ L GS +LL S A + +P AA +G GGA R A +
Sbjct: 198 WEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSA--- 254
Query: 85 QSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPL 144
Q L + P PL RLG A SPP PL
Sbjct: 255 QQPPLARLLLASAVSLAASLARSPPPLQPRLGSA-----------------SPPRLAAPL 297
Query: 145 LLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASR 204
+ AP SP RR R G L L ARR R
Sbjct: 298 ---------AGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARR-----R 343
Query: 205 AGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGP----- 259
G RR RR+ G GS P P A G G+R A A + G GP
Sbjct: 344 RGGEERRVRGRRQ--GCALGS----PPIPAGPAAPGRAGERRA-ARQWRKRGGGPGVSPR 396
Query: 260 -RSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPP 318
++ G+ GGV P R R + R SP +W QG A+ + P
Sbjct: 397 EGAQGEGVRGGVTP----RARGSSTCLRPSP-----ATW------QGGAPYRAIFAAGPR 441
Query: 319 SLARAAARRRGPGG--ATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLR--DRDL 374
A +A PGG A+ P + L+ R R+ P D+ +PA DR+
Sbjct: 442 LSAPSAEAEEVPGGHTASNPTYEPLSSR------RTKAPSEGRDSPSSPATSTHYLDRES 495
Query: 375 RAAPPRPRPSQRP 387
PS+ P
Sbjct: 496 GLGSVNSHPSRSP 508
Score = 38.9 bits (89), Expect = 0.010
Identities = 66/235 (28%), Positives = 88/235 (37%), Gaps = 41/235 (17%)
Query: 3 LRAAAESRDHRARLRTLSEARPGDWERRAGS--SLCGSAEA-----LLLSPHVTGAAQ-- 53
L +A +R R R EA G R + GSA+ LLL+ V+ AA
Sbjct: 216 LPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLA 275
Query: 54 RSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVS 113
RSP P + R G A R AA G+++ +L P R R + + LPL
Sbjct: 276 RSPPPLQPRL------GSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPR 329
Query: 114 RLGHAGE-------RGSPG---AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS- 162
L GE RG G + SPP P PG+ R +
Sbjct: 330 SLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGPA-------APGRAGERRAAR 382
Query: 163 -----PGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRA 212
GG P A+G G+ G++PR RG + R A+ G A RA
Sbjct: 383 QWRKRGGGPGVSPREGAQGEGVRGGVTPR---ARGSSTCLRPSPATWQGGAPYRA 434
Score = 38.5 bits (88), Expect = 0.013
Identities = 73/291 (25%), Positives = 102/291 (35%), Gaps = 50/291 (17%)
Query: 91 PRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFV 150
PR G+ + GP PLV + AG++ ++P P L +
Sbjct: 51 PRARGVEVASGRTRWTGPQPLVDT------PPARRAGELCEAPQTAPGFHFQPFLSLSPH 104
Query: 151 FPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATR 210
G++ P G RRG+ G G +P P+ A+R +
Sbjct: 105 QERGRSKPSPPVSGTRRGKTGQWKEGRGSHPTPEPQ-------------RLAARRWLHSP 151
Query: 211 RAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGV 270
R P+ AP P G P++ R P + PG G
Sbjct: 152 REPTPPGRLSAP-------PRHGPHPQSF-----------------RRPSAHPPGRGSGR 187
Query: 271 EPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGP 330
P G ++A R S + GS A PA PAP + AAA RG
Sbjct: 188 VPRGQPEQQAWE--QRSSHFLAPEGSVA-SLLPSAKPA--RAPRPAPRAREEAAAGSRGR 242
Query: 331 GGATEPGFVTLAFRSRLP-LLRSPGPEGTSDAARAPAPGLRDRDLRAAPPR 380
GGA P A + L LL + + AR+P P L+ R A+PPR
Sbjct: 243 GGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPP-LQPRLGSASPPR 292
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 51.6 bits (122), Expect = 1e-06
Identities = 95/359 (26%), Positives = 121/359 (33%), Gaps = 65/359 (18%)
Query: 43 LLSPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLG-TQSATL---GPRRGGLRS 98
LL+P G+ R P P A G GA + AE G AT+ PR G R+
Sbjct: 24 LLTPRPPGSP-RPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRT 82
Query: 99 RTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSA 158
PA G G ER P A + +P SSP GR +
Sbjct: 83 SRPPASGRG------------ERAPP-AKNTSPGPVSSP-GRA--------------SGT 114
Query: 159 PRPSPGGRRGRPLGA----ARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPS 214
RP P G++G + A ARG L ARR + G +
Sbjct: 115 TRPGPLGQKGLRISAEETVARGKATEAPKRSALSA-----GARRDTSGPTPGTPSPAMAR 169
Query: 215 RRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPG 274
R R G G R P A P G + ++ +E R P GG++ P
Sbjct: 170 RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPA 229
Query: 275 WSRERAGAGLSRDSPQVPRSGSWARPC-REQGHPAVLALQSPAPPSLARAAARRRGPGGA 333
SR + + SP RSG AR R HP+ P P L A
Sbjct: 230 -SRSLSSSATPLSSP--ARSGPSARGTPRAPAHPS-----QPKPKGLQ-----------A 270
Query: 334 TEPGFVTLAFRSRLPLL--RSPGPEGTSDAARAPAPGL-RDRDLRAAPPRPRPSQRPVS 389
P VT + P L S P T + P+P +PP PSQ S
Sbjct: 271 LRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTS 329
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 51.6 bits (122), Expect = 1e-06
Identities = 100/373 (26%), Positives = 128/373 (34%), Gaps = 74/373 (19%)
Query: 27 WERRAGSSLC--GSAEALLLSPHVTGAAQRSPTPGRARAAPQQGDGGARRERAAAESLGT 84
WE+R+ L GS +LL S A + +P AA +G GGA R A +
Sbjct: 198 WEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSA--- 254
Query: 85 QSATLGPRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPL 144
Q L + P PL RLG A SPP PL
Sbjct: 255 QQPPLARLLLASAVSLAASLARSPPPLQPRLGSA-----------------SPPRLAAPL 297
Query: 145 LLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASR 204
+ AP SP RR R G L L ARR R
Sbjct: 298 ---------AGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARR-----R 343
Query: 205 AGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGP----- 259
G RR RR+ G GS P P A G G+R A A + G GP
Sbjct: 344 RGGEERRVRGRRQ--GCALGS----PPIPAGPAAPGRAGERRA-ARQWRKRGGGPGVSPR 396
Query: 260 -RSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPP 318
++ G+ GGV P R R + R SP +W QG A+ + P
Sbjct: 397 EGAQGEGVRGGVTP----RARGSSTCLRPSP-----ATW------QGGAPYRAIFAAGPR 441
Query: 319 SLARAAARRRGPGG--ATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLR--DRDL 374
A +A PGG A+ P + L+ R R+ P D+ +PA DR+
Sbjct: 442 LSAPSAEAEEVPGGHTASNPTYEPLSSR------RTKAPSEGRDSPSSPATSTHYLDRES 495
Query: 375 RAAPPRPRPSQRP 387
PS+ P
Sbjct: 496 GLGSVNSHPSRSP 508
Score = 38.9 bits (89), Expect = 0.010
Identities = 66/235 (28%), Positives = 88/235 (37%), Gaps = 41/235 (17%)
Query: 3 LRAAAESRDHRARLRTLSEARPGDWERRAGS--SLCGSAEA-----LLLSPHVTGAAQ-- 53
L +A +R R R EA G R + GSA+ LLL+ V+ AA
Sbjct: 216 LPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLA 275
Query: 54 RSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVS 113
RSP P + R G A R AA G+++ +L P R R + + LPL
Sbjct: 276 RSPPPLQPRL------GSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPR 329
Query: 114 RLGHAGE-------RGSPG---AGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS- 162
L GE RG G + SPP P PG+ R +
Sbjct: 330 SLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGPA-------APGRAGERRAAR 382
Query: 163 -----PGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRA 212
GG P A+G G+ G++PR RG + R A+ G A RA
Sbjct: 383 QWRKRGGGPGVSPREGAQGEGVRGGVTPR---ARGSSTCLRPSPATWQGGAPYRA 434
Score = 38.5 bits (88), Expect = 0.013
Identities = 73/291 (25%), Positives = 102/291 (35%), Gaps = 50/291 (17%)
Query: 91 PRRGGLRSRTDPAFGAGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTFV 150
PR G+ + GP PLV + AG++ ++P P L +
Sbjct: 51 PRARGVEVASGRTRWTGPQPLVDT------PPARRAGELCEAPQTAPGFHFQPFLSLSPH 104
Query: 151 FPPGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATR 210
G++ P G RRG+ G G +P P+ A+R +
Sbjct: 105 QERGRSKPSPPVSGTRRGKTGQWKEGRGSHPTPEPQ-------------RLAARRWLHSP 151
Query: 211 RAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGV 270
R P+ AP P G P++ R P + PG G
Sbjct: 152 REPTPPGRLSAP-------PRHGPHPQSF-----------------RRPSAHPPGRGSGR 187
Query: 271 EPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGP 330
P G ++A R S + GS A PA PAP + AAA RG
Sbjct: 188 VPRGQPEQQAWE--QRSSHFLAPEGSVA-SLLPSAKPA--RAPRPAPRAREEAAAGSRGR 242
Query: 331 GGATEPGFVTLAFRSRLP-LLRSPGPEGTSDAARAPAPGLRDRDLRAAPPR 380
GGA P A + L LL + + AR+P P L+ R A+PPR
Sbjct: 243 GGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPP-LQPRLGSASPPR 292
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 51.6 bits (122), Expect = 1e-06
Identities = 72/293 (24%), Positives = 103/293 (35%), Gaps = 56/293 (19%)
Query: 53 QRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLV 112
Q P PG+ + P QGD +R R+ G P +GG + + P P
Sbjct: 151 QGPPPPGKPQGPPPQGDNKSRSSRSPP---GKPQGP--PPQGGNQPQGPPPPPGKPQGPP 205
Query: 113 SRLGHAGE--------RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPP----GKTSAPR 160
+ G+ + +G P GD SA SPPG+P PP + P
Sbjct: 206 PQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQG--------PPPQGGNQPQGPP 257
Query: 161 PSPGGRRG-RPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNF 219
P PG +G P G + G P P+ P+G +R + R+P +
Sbjct: 258 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSR-----------SSRSPPGKPQG 306
Query: 220 GAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRER 279
P+G + G P +G G N +GP PG G P G S+ R
Sbjct: 307 PPPQGGNQ---PQGPPPPPGKPQGPPPQGG----NKPQGPPP--PGKPQGPPPQGGSKSR 357
Query: 280 AGAG----------LSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLAR 322
+ ++PQ P + P + Q PA P PP R
Sbjct: 358 SARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGR 410
Score = 49.3 bits (116), Expect = 7e-06
Identities = 82/361 (22%), Positives = 120/361 (33%), Gaps = 65/361 (18%)
Query: 53 QRSPTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLV 112
Q P PG+ + P QGD + G P +GG + + P P
Sbjct: 90 QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGP------PPQGGNQPQGPPPPPGKPQGPP 143
Query: 113 SRLGHAGE--------RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPP----GKTSAPR 160
+ G+ + +G P GD S+ SPPG+P PP + P
Sbjct: 144 PQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQG--------PPPQGGNQPQGPP 195
Query: 161 PSPGGRRG-RPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNF 219
P PG +G P G + G P P+ P+G ++ + R+P +
Sbjct: 196 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQ-----------SARSPPGKPQG 244
Query: 220 GAPRGSRRLR-------------PDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGL 266
P+G + + P G P+ G+ + + R RS PG
Sbjct: 245 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSP-PGK 303
Query: 267 AGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAAR 326
G P G ++ + G PQ P +P QG P Q P P +++ +
Sbjct: 304 PQGPPPQGGNQPQ-GPPPPPGKPQGPPPQGGNKP---QGPPPPGKPQGPPPQGGSKSRSA 359
Query: 327 RRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPRPSQR 386
R PG P P P G +AP G PPRP R
Sbjct: 360 RSPPGKPQGPP----QQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ-----GPPRPPQGGR 410
Query: 387 P 387
P
Sbjct: 411 P 411
Score = 42.4 bits (98), Expect = 9e-04
Identities = 54/222 (24%), Positives = 79/222 (35%), Gaps = 19/222 (8%)
Query: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPP----GKTSAPRPSPGGRRG-RPLGAAR 175
+G+P G P SPPG+P PP + P P PG +G P G +
Sbjct: 37 QGAPPQGGNKPQGPPSPPGKPQG--------PPPQGGNQPQGPPPPPGKPQGPPPQGGNK 88
Query: 176 GTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGS-RRLRPDAGK 234
G P P+ P+G +S + + ++ + P G + P G
Sbjct: 89 PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 148
Query: 235 FPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRS 294
P+ G+ + N R RS PG G P G ++ + G PQ P
Sbjct: 149 KPQGPPPPGKPQGPPPQGDNKSRSSRSP-PGKPQGPPPQGGNQPQ-GPPPPPGKPQGPPP 206
Query: 295 GSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEP 336
+P QG P Q P P ++ + R PG P
Sbjct: 207 QGGNKP---QGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGP 245
Score = 32.7 bits (73), Expect = 0.71
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 56 PTPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRL 115
P PG+ + P QG + + G P +GG +SR+ + P +
Sbjct: 320 PPPGKPQGPPPQGGNKPQGPPPPGKPQGP------PPQGGSKSRSARSPPGKPQGPPQQE 373
Query: 116 GHAGERGSPGAGDVNPVSASSPP-GRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRP 170
G+ + P AG NP +PP G+P PRP GGR RP
Sbjct: 374 GNNPQGPPPPAGG-NPQQPQAPPAGQPQ--------------GPPRPPQGGRPSRP 414
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 51.6 bits (122), Expect = 1e-06
Identities = 107/418 (25%), Positives = 151/418 (36%), Gaps = 67/418 (16%)
Query: 18 TLSEARPG----DWERRAGSSLCGSAEALLLSPHVTGA-----AQRSPTP-GRA------ 61
+LS +PG D ER G S A +L P+ A++ P P G++
Sbjct: 945 SLSHMKPGEEGPDGERAPGDSTTSDA-SLAQKPNKPAVPEAPIAKKEPVPRGKSLRSRRV 1003
Query: 62 -RAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGP-LPLVSRLGHAG 119
R P+ D R + L +S T GP +G + P GA LP +
Sbjct: 1004 HRGLPEAEDSPCRAPVLPKDLLLPESCT-GPPQGQMEGAGAPGRGASEGLPRMC------ 1056
Query: 120 ERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS---PGGRRGRPLGAARG 176
++A S P P P LTT PP K + + G R G+P A
Sbjct: 1057 ---------TRSLTALSEPRTPGPPGLTTTPAPPDKLGGKQRAAFKSGKRVGKPSPKAAS 1107
Query: 177 TGLNPGLSPRLQE--PRGHQSARRTDTASRAGWATRRAPSRRRNFGAP-RGSRRLRPDAG 233
+ NP P + P G ++ + TD+ S G R R R S+R RP G
Sbjct: 1108 SPSNPAALPVASDSSPMGSKT-KETDSPSTPGKDQRSMILRSRTKTQEIFHSKRRRPSEG 1166
Query: 234 KFPEASGGKGQRAAGAERVLNNGRGPR----SRLPGLAGGV-EPPGWSRERAGAGLS-RD 287
+ P K ++L+N P S P G V + + AG+ LS R
Sbjct: 1167 RLPNCRATK--------KLLDNSHLPATFKVSSSPQKEGRVSQRARVPKPGAGSKLSDRP 1218
Query: 288 SPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEP-GFVTLAFRSR 346
+ R ++ P + VL +S S + A+ G G P G TL R
Sbjct: 1219 LHALKRKSAFMAPVPTKKRNLVLRSRS----SSSSNASGNGGDGKEERPEGSPTLFKRMS 1274
Query: 347 LPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPG 404
P P A + P P D L+ A S+ G K K P+ G G
Sbjct: 1275 SPKKAKPTKGNGEPATKLPPPETPDACLKLA------SRAAFQGAMKTKVLPPRKGRG 1326
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,411,226
Number of Sequences: 37866
Number of extensions: 1711470
Number of successful extensions: 10224
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 1159
Number of HSP's that attempted gapping in prelim test: 7391
Number of HSP's gapped (non-prelim): 3097
length of query: 460
length of database: 18,247,518
effective HSP length: 106
effective length of query: 354
effective length of database: 14,233,722
effective search space: 5038737588
effective search space used: 5038737588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.